RNA–Protein interactions for RNA: ENST00000404210.5

LINC00339-201, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 1,189 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-201ENST00000404210 PDZD4Q76G19 769 aaPredicted RBP12.9□□□□□ -0.34
LINC00339-201ENST00000404210 SLC35G2Q8TBE7 412 aa12.9□□□□□ -0.34
LINC00339-201ENST00000404210 FAM149B1Q96BN6 582 aa12.9□□□□□ -0.34
LINC00339-201ENST00000404210 TRIM44Q96DX7 344 aaPredicted RBP12.9□□□□□ -0.34
LINC00339-201ENST00000404210 PIWIL1Q96J94 861 aaKnown RBP12.9□□□□□ -0.34
LINC00339-201ENST00000404210 CALR3Q96L12 384 aaKnown RBP12.9□□□□□ -0.34
LINC00339-201ENST00000404210 SLC2A13Q96QE2 648 aa12.9□□□□□ -0.34
LINC00339-201ENST00000404210 GCNAQ96QF7 691 aa12.9□□□□□ -0.34
LINC00339-201ENST00000404210 CDK5RAP1Q96SZ6 601 aaKnown RBP12.9□□□□□ -0.34
LINC00339-201ENST00000404210 DDX23Q9BUQ8 820 aaKnown RBP12.9□□□□□ -0.34
LINC00339-201ENST00000404210 NMUR1Q9HB89 426 aa12.9□□□□□ -0.34
LINC00339-201ENST00000404210 METTL5Q9NRN9 209 aaKnown RBP12.9□□□□□ -0.34
LINC00339-201ENST00000404210 TMEM51Q9NW97 253 aa12.9□□□□□ -0.34
LINC00339-201ENST00000404210 OSER1Q9NX31 292 aa12.9□□□□□ -0.34
LINC00339-201ENST00000404210 RRN3Q9NYV6 651 aa12.9□□□□□ -0.34
LINC00339-201ENST00000404210 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.9□□□□□ -0.34
LINC00339-201ENST00000404210 ZMYM5Q9UJ78 669 aa12.9□□□□□ -0.34
LINC00339-201ENST00000404210 PPP2R2CQ9Y2T4 447 aa12.9□□□□□ -0.34
LINC00339-201ENST00000404210 ANAPC1Q9H1A4 1944 aa12.9□□□□□ -0.35
LINC00339-201ENST00000404210 MYO16Q9Y6X6 1858 aa12.89□□□□□ -0.35
LINC00339-201ENST00000404210 LAMA3Q16787 3333 aa12.89□□□□□ -0.35
LINC00339-201ENST00000404210 RCCD1A6NED2 376 aa12.89□□□□□ -0.35
LINC00339-201ENST00000404210 TMEM191CA6NGB0 347 aa12.89□□□□□ -0.35
LINC00339-201ENST00000404210 CAPN9O14815 690 aa12.89□□□□□ -0.35
LINC00339-201ENST00000404210 ZSCAN12O43309 604 aa12.89□□□□□ -0.35
LINC00339-201ENST00000404210 MOSPD3O75425 235 aa12.89□□□□□ -0.35
LINC00339-201ENST00000404210 TADA3O75528 432 aa12.89□□□□□ -0.35
LINC00339-201ENST00000404210 DAB1O75553 588 aa12.89□□□□□ -0.35
LINC00339-201ENST00000404210 MTA2O94776 668 aa12.89□□□□□ -0.35
LINC00339-201ENST00000404210 NCAM1P13591 858 aa12.89□□□□□ -0.35
LINC00339-201ENST00000404210 RARGP13631 454 aa12.89□□□□□ -0.35
LINC00339-201ENST00000404210 DDX6P26196 483 aaKnown RBP eCLIP12.89□□□□□ -0.35
LINC00339-201ENST00000404210 RFC1P35251 1148 aaPredicted RBP12.89□□□□□ -0.35
LINC00339-201ENST00000404210 MATKP42679 507 aa12.89□□□□□ -0.35
LINC00339-201ENST00000404210 MTHFRP42898 656 aa12.89□□□□□ -0.35
LINC00339-201ENST00000404210 PGFP49763 221 aa12.89□□□□□ -0.35
LINC00339-201ENST00000404210 TUBP50607 506 aa12.89□□□□□ -0.35
LINC00339-201ENST00000404210 HADHBP55084 474 aaKnown RBP12.89□□□□□ -0.35
LINC00339-201ENST00000404210 RNASE9P60153 205 aaKnown RBP12.89□□□□□ -0.35
LINC00339-201ENST00000404210 HECTD3Q5T447 861 aa12.89□□□□□ -0.35
LINC00339-201ENST00000404210 DCUN1D2Q6PH85 259 aa12.89□□□□□ -0.35
LINC00339-201ENST00000404210 KLHDC10Q6PID8 442 aa12.89□□□□□ -0.35
LINC00339-201ENST00000404210 TADA2BQ86TJ2 420 aa12.89□□□□□ -0.35
LINC00339-201ENST00000404210 DEFB106AQ8N104 65 aa12.89□□□□□ -0.35
LINC00339-201ENST00000404210 JOSD2Q8TAC2 188 aa12.89□□□□□ -0.35
LINC00339-201ENST00000404210 RFFLQ8WZ73 363 aa12.89□□□□□ -0.35
LINC00339-201ENST00000404210 MRPS31Q92665 395 aaKnown RBP12.89□□□□□ -0.35
LINC00339-201ENST00000404210 RIPOR3Q96MK2 946 aa12.89□□□□□ -0.35
LINC00339-201ENST00000404210 NUP85Q9BW27 656 aa12.89□□□□□ -0.35
LINC00339-201ENST00000404210 TSGA10Q9BZW7 698 aa12.89□□□□□ -0.35
LINC00339-201ENST00000404210 LACRTQ9GZZ8 138 aa12.89□□□□□ -0.35
LINC00339-201ENST00000404210 ATXN3LQ9H3M9 355 aa12.89□□□□□ -0.35
LINC00339-201ENST00000404210 WDR6Q9NNW5 1121 aaKnown RBP12.89□□□□□ -0.35
LINC00339-201ENST00000404210 OLA1Q9NTK5 396 aaKnown RBP12.89□□□□□ -0.35
LINC00339-201ENST00000404210 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.89□□□□□ -0.35
LINC00339-201ENST00000404210 CTTNBP2NLQ9P2B4 639 aa12.89□□□□□ -0.35
LINC00339-201ENST00000404210 LCMT1Q9UIC8 334 aa12.89□□□□□ -0.35
LINC00339-201ENST00000404210 C2orf16Q68DN1 1984 aa12.89□□□□□ -0.35
LINC00339-201ENST00000404210 A0A1W2PRU2 124 aa12.88□□□□□ -0.35
LINC00339-201ENST00000404210 C2CD4BA6NLJ0 364 aa12.88□□□□□ -0.35
LINC00339-201ENST00000404210 ATMINO43313 823 aaPredicted RBP12.88□□□□□ -0.35
LINC00339-201ENST00000404210 KRT86O43790 486 aa12.88□□□□□ -0.35
LINC00339-201ENST00000404210 GRAP2O75791 330 aa12.88□□□□□ -0.35
LINC00339-201ENST00000404210 ABL1P00519 1130 aa12.88□□□□□ -0.35
LINC00339-201ENST00000404210 PDGFRAP16234 1089 aa12.88□□□□□ -0.35
LINC00339-201ENST00000404210 ATP5C1P36542 298 aaKnown RBP12.88□□□□□ -0.35
LINC00339-201ENST00000404210 CCR2P41597 374 aa12.88□□□□□ -0.35
LINC00339-201ENST00000404210 ARHGAP25P42331 645 aa12.88□□□□□ -0.35
LINC00339-201ENST00000404210 RPL7AP62424 266 aaKnown RBP12.88□□□□□ -0.35
LINC00339-201ENST00000404210 NTHL1P78549 312 aa12.88□□□□□ -0.35
LINC00339-201ENST00000404210 ARHGAP15Q53QZ3 475 aa12.88□□□□□ -0.35
LINC00339-201ENST00000404210 DCAF6Q58WW2 860 aa12.88□□□□□ -0.35
LINC00339-201ENST00000404210 SYPL2Q5VXT5 272 aa12.88□□□□□ -0.35
LINC00339-201ENST00000404210 RNF10Q8N5U6 811 aaKnown RBP12.88□□□□□ -0.35
LINC00339-201ENST00000404210 SHKBP1Q8TBC3 707 aa12.88□□□□□ -0.35
LINC00339-201ENST00000404210 ZNF564Q8TBZ8 553 aaPredicted RBP12.88□□□□□ -0.35
LINC00339-201ENST00000404210 FNIP1Q8TF40 1166 aa12.88□□□□□ -0.35
LINC00339-201ENST00000404210 RNF139Q8WU17 664 aa12.88□□□□□ -0.35
LINC00339-201ENST00000404210 RXFP2Q8WXD0 754 aa12.88□□□□□ -0.35
LINC00339-201ENST00000404210 NT5C3BQ969T7 300 aa12.88□□□□□ -0.35
LINC00339-201ENST00000404210 TCEAL4Q96EI5 215 aa12.88□□□□□ -0.35
LINC00339-201ENST00000404210 APOL5Q9BWW9 433 aa12.88□□□□□ -0.35
LINC00339-201ENST00000404210 TASP1Q9H6P5 420 aa12.88□□□□□ -0.35
LINC00339-201ENST00000404210 CD207Q9UJ71 328 aa12.88□□□□□ -0.35
LINC00339-201ENST00000404210 STAP1Q9ULZ2 295 aa12.88□□□□□ -0.35
LINC00339-201ENST00000404210 PYCARDQ9ULZ3 195 aa12.88□□□□□ -0.35
LINC00339-201ENST00000404210 TFR2Q9UP52 801 aa12.88□□□□□ -0.35
LINC00339-201ENST00000404210 NAALADL1Q9UQQ1 740 aa12.88□□□□□ -0.35
LINC00339-201ENST00000404210 MRPS23Q9Y3D9 190 aaKnown RBP12.88□□□□□ -0.35
LINC00339-201ENST00000404210 OBSL1O75147 1896 aa12.88□□□□□ -0.35
LINC00339-201ENST00000404210 CLUHO75153 1309 aa12.88□□□□□ -0.35
LINC00339-201ENST00000404210 MYO1FO00160 1098 aa12.87□□□□□ -0.35
LINC00339-201ENST00000404210 HAX1O00165 279 aa12.87□□□□□ -0.35
LINC00339-201ENST00000404210 DPYSL4O14531 572 aa12.87□□□□□ -0.35
LINC00339-201ENST00000404210 CCP110O43303 1012 aa12.87□□□□□ -0.35
LINC00339-201ENST00000404210 GJB6O95452 261 aa12.87□□□□□ -0.35
LINC00339-201ENST00000404210 OAS1P00973 400 aaKnown RBP12.87□□□□□ -0.35
LINC00339-201ENST00000404210 GPD1P21695 349 aa12.87□□□□□ -0.35
LINC00339-201ENST00000404210 FSHRP23945 695 aa12.87□□□□□ -0.35
LINC00339-201ENST00000404210 GBP1P32455 592 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms