RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 TSSK4Q6SA08 328 aa9.72□□□□□ -0.85
VPS53-203ENST00000401468 TPRG1Q6ZUI0 275 aa9.72□□□□□ -0.85
VPS53-203ENST00000401468 ACOT1Q86TX2 421 aa9.72□□□□□ -0.85
VPS53-203ENST00000401468 BPHLQ86WA6 291 aaPredicted RBP9.72□□□□□ -0.85
VPS53-203ENST00000401468 DRC7Q8IY82 874 aa9.72□□□□□ -0.85
VPS53-203ENST00000401468 CCDC105Q8IYK2 499 aa9.72□□□□□ -0.85
VPS53-203ENST00000401468 TCEAL8Q8IYN2 117 aa9.72□□□□□ -0.85
VPS53-203ENST00000401468 FUKQ8N0W3 1084 aa9.72□□□□□ -0.85
VPS53-203ENST00000401468 TTC16Q8NEE8 873 aa9.72□□□□□ -0.85
VPS53-203ENST00000401468 SPPL2BQ8TCT7 592 aa9.72□□□□□ -0.85
VPS53-203ENST00000401468 EPS8L1Q8TE68 723 aa9.72□□□□□ -0.85
VPS53-203ENST00000401468 GIPC2Q8TF65 315 aa9.72□□□□□ -0.85
VPS53-203ENST00000401468 TFAP2BQ92481 460 aa9.72□□□□□ -0.85
VPS53-203ENST00000401468 RSPRY1Q96DX4 576 aa9.72□□□□□ -0.85
VPS53-203ENST00000401468 PCED1BQ96HM7 432 aa9.72□□□□□ -0.85
VPS53-203ENST00000401468 ZFYVE19Q96K21 471 aa9.72□□□□□ -0.85
VPS53-203ENST00000401468 SEPT5Q99719 369 aaPredicted RBP9.72□□□□□ -0.85
VPS53-203ENST00000401468 B3GNT5Q9BYG0 378 aa9.72□□□□□ -0.85
VPS53-203ENST00000401468 RHOBTB2Q9BYZ6 727 aa9.72□□□□□ -0.85
VPS53-203ENST00000401468 DNAI2Q9GZS0 605 aa9.72□□□□□ -0.85
VPS53-203ENST00000401468 SLITRK6Q9H5Y7 841 aa9.72□□□□□ -0.85
VPS53-203ENST00000401468 CSNK1G1Q9HCP0 422 aa9.72□□□□□ -0.85
VPS53-203ENST00000401468 NLRC4Q9NPP4 1024 aa9.72□□□□□ -0.85
VPS53-203ENST00000401468 NOCTQ9UK39 431 aaKnown RBP9.72□□□□□ -0.85
VPS53-203ENST00000401468 GTF3C4Q9UKN8 822 aa9.72□□□□□ -0.85
VPS53-203ENST00000401468 NDRG2Q9UN36 371 aaKnown RBP9.72□□□□□ -0.85
VPS53-203ENST00000401468 PCDHB4Q9Y5E5 795 aa9.72□□□□□ -0.85
VPS53-203ENST00000401468 NUP205Q92621 2012 aa9.72□□□□□ -0.85
VPS53-203ENST00000401468 NCOR2Q9Y618 2525 aa9.71□□□□□ -0.85
VPS53-203ENST00000401468 LRRC53A6NM62 1247 aa9.71□□□□□ -0.86
VPS53-203ENST00000401468 MFAP3LO75121 409 aa9.71□□□□□ -0.86
VPS53-203ENST00000401468 PNMA6AP0CW24 399 aaPredicted RBP9.71□□□□□ -0.86
VPS53-203ENST00000401468 CYP11B1P15538 503 aa9.71□□□□□ -0.86
VPS53-203ENST00000401468 TIMP2P16035 220 aa9.71□□□□□ -0.86
VPS53-203ENST00000401468 HOXA9P31269 272 aa9.71□□□□□ -0.86
VPS53-203ENST00000401468 CASP14P31944 242 aa9.71□□□□□ -0.86
VPS53-203ENST00000401468 CDH5P33151 784 aaPredicted RBP9.71□□□□□ -0.86
VPS53-203ENST00000401468 STAT1P42224 750 aa9.71□□□□□ -0.86
VPS53-203ENST00000401468 SOX9P48436 509 aa9.71□□□□□ -0.86
VPS53-203ENST00000401468 CLCN5P51795 746 aa9.71□□□□□ -0.86
VPS53-203ENST00000401468 BPIFB4P59827 614 aa9.71□□□□□ -0.86
VPS53-203ENST00000401468 PSMC1P62191 440 aaKnown RBP9.71□□□□□ -0.86
VPS53-203ENST00000401468 CYP4F8P98187 520 aa9.71□□□□□ -0.86
VPS53-203ENST00000401468 CDK17Q00537 523 aa9.71□□□□□ -0.86
VPS53-203ENST00000401468 RAPGEF1Q13905 1077 aa9.71□□□□□ -0.86
VPS53-203ENST00000401468 MLF2Q15773 248 aaPredicted RBP9.71□□□□□ -0.86
VPS53-203ENST00000401468 CNGA2Q16280 664 aa9.71□□□□□ -0.86
VPS53-203ENST00000401468 ARHGAP44Q17R89 818 aa9.71□□□□□ -0.86
VPS53-203ENST00000401468 SLC44A4Q53GD3 710 aa9.71□□□□□ -0.86
VPS53-203ENST00000401468 PPP1R26Q5T8A7 1209 aaPredicted RBP9.71□□□□□ -0.86
VPS53-203ENST00000401468 HGSNATQ68CP4 663 aa9.71□□□□□ -0.86
VPS53-203ENST00000401468 LCLAT1Q6UWP7 414 aa9.71□□□□□ -0.86
VPS53-203ENST00000401468 VSTM1Q6UX27 236 aa9.71□□□□□ -0.86
VPS53-203ENST00000401468 C4orf50Q6ZRC1 276 aa9.71□□□□□ -0.86
VPS53-203ENST00000401468 PDZD4Q76G19 769 aaPredicted RBP9.71□□□□□ -0.86
VPS53-203ENST00000401468 CACNA2D4Q7Z3S7 1137 aa9.71□□□□□ -0.86
VPS53-203ENST00000401468 SLC47A2Q86VL8 602 aa9.71□□□□□ -0.86
VPS53-203ENST00000401468 ZNF677Q86XU0 584 aa9.71□□□□□ -0.86
VPS53-203ENST00000401468 C12orf29Q8N999 325 aa9.71□□□□□ -0.86
VPS53-203ENST00000401468 ARMC2Q8NEN0 867 aa9.71□□□□□ -0.86
VPS53-203ENST00000401468 SHKBP1Q8TBC3 707 aa9.71□□□□□ -0.86
VPS53-203ENST00000401468 MYLPFQ96A32 169 aa9.71□□□□□ -0.86
VPS53-203ENST00000401468 PDLIM2Q96JY6 352 aa9.71□□□□□ -0.86
VPS53-203ENST00000401468 PCMTD1Q96MG8 357 aaPredicted RBP9.71□□□□□ -0.86
VPS53-203ENST00000401468 SPAG5Q96R06 1193 aa9.71□□□□□ -0.86
VPS53-203ENST00000401468 UBXN6Q9BZV1 441 aa9.71□□□□□ -0.86
VPS53-203ENST00000401468 PNPLA8Q9NP80 782 aa9.71□□□□□ -0.86
VPS53-203ENST00000401468 TMEM30AQ9NV96 361 aa9.71□□□□□ -0.86
VPS53-203ENST00000401468 IMPACTQ9P2X3 320 aa9.71□□□□□ -0.86
VPS53-203ENST00000401468 WNT16Q9UBV4 365 aa9.71□□□□□ -0.86
VPS53-203ENST00000401468 WDR3Q9UNX4 943 aaKnown RBP eCLIP9.71□□□□□ -0.86
VPS53-203ENST00000401468 LUC7L2Q9Y383 392 aaKnown RBP9.71□□□□□ -0.86
VPS53-203ENST00000401468 ADAMTS9Q9P2N4 1935 aa9.71□□□□□ -0.86
VPS53-203ENST00000401468 THADAQ6YHU6 1953 aa9.71□□□□□ -0.86
VPS53-203ENST00000401468 TPRP12270 2363 aaKnown RBP9.71□□□□□ -0.86
VPS53-203ENST00000401468 CYP26A1O43174 497 aa9.7□□□□□ -0.86
VPS53-203ENST00000401468 HAPLN1P10915 354 aaPredicted RBP9.7□□□□□ -0.86
VPS53-203ENST00000401468 FERP16591 822 aa9.7□□□□□ -0.86
VPS53-203ENST00000401468 CHRNB2P17787 502 aa9.7□□□□□ -0.86
VPS53-203ENST00000401468 TARSP26639 723 aaKnown RBP9.7□□□□□ -0.86
VPS53-203ENST00000401468 GNA15P30679 374 aa9.7□□□□□ -0.86
VPS53-203ENST00000401468 GDI1P31150 447 aa9.7□□□□□ -0.86
VPS53-203ENST00000401468 RPL34P49207 117 aaKnown RBP9.7□□□□□ -0.86
VPS53-203ENST00000401468 PTK2Q05397 1052 aa9.7□□□□□ -0.86
VPS53-203ENST00000401468 PLD1Q13393 1074 aa9.7□□□□□ -0.86
VPS53-203ENST00000401468 ORC1Q13415 861 aa9.7□□□□□ -0.86
VPS53-203ENST00000401468 ZNF394Q53GI3 561 aa9.7□□□□□ -0.86
VPS53-203ENST00000401468 SGO2Q562F6 1265 aa9.7□□□□□ -0.86
VPS53-203ENST00000401468 C4orf48Q5BLP8 95 aa9.7□□□□□ -0.86
VPS53-203ENST00000401468 MDH1BQ5I0G3 518 aa9.7□□□□□ -0.86
VPS53-203ENST00000401468 MRPL14Q6P1L8 145 aaKnown RBP9.7□□□□□ -0.86
VPS53-203ENST00000401468 WDR59Q6PJI9 974 aa9.7□□□□□ -0.86
VPS53-203ENST00000401468 VITQ6UXI7 678 aa9.7□□□□□ -0.86
VPS53-203ENST00000401468 CYP26C1Q6V0L0 522 aa9.7□□□□□ -0.86
VPS53-203ENST00000401468 NOP9Q86U38 636 aaKnown RBP9.7□□□□□ -0.86
VPS53-203ENST00000401468 FAM35AQ86V20 835 aa9.7□□□□□ -0.86
VPS53-203ENST00000401468 CNGA4Q8IV77 575 aa9.7□□□□□ -0.86
VPS53-203ENST00000401468 TC2NQ8N9U0 490 aa9.7□□□□□ -0.86
VPS53-203ENST00000401468 ANKRD52Q8NB46 1076 aa9.7□□□□□ -0.86
VPS53-203ENST00000401468 ZMIZ2Q8NF64 920 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms