RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 HDCP19113 662 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 FLT3LGP49771 235 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 GALNT2Q10471 571 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 LRMPQ12912 555 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 MAN2A1Q16706 1144 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 FNDC7Q5VTL7 733 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 LRCH2Q5VUJ6 765 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 GPR139Q6DWJ6 353 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 ABRAXAS1Q6UWZ7 409 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 PXKQ7Z7A4 578 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 SLFN11Q7Z7L1 901 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 GLB1L3Q8NCI6 653 aaPredicted RBP4.49□□□□□ -1.69
HMGB1-204ENST00000399489 KBTBD7Q8WVZ9 684 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 RSAD2Q8WXG1 361 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 LARP4BQ92615 738 aaKnown RBP4.49□□□□□ -1.69
HMGB1-204ENST00000399489 PRPF18Q99633 342 aaKnown RBP4.49□□□□□ -1.69
HMGB1-204ENST00000399489 FDXACB1Q9BRP7 624 aaPredicted RBP4.49□□□□□ -1.69
HMGB1-204ENST00000399489 TAF1DQ9H5J8 278 aaPredicted RBP4.49□□□□□ -1.69
HMGB1-204ENST00000399489 NRDE2Q9H7Z3 1164 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 IL23AQ9NPF7 189 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 SLC2A4RGQ9NR83 387 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 SEPT11Q9NVA2 429 aaKnown RBP4.49□□□□□ -1.69
HMGB1-204ENST00000399489 NCDNQ9UBB6 729 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 MAGEL2Q9UJ55 1249 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 GTF3C4Q9UKN8 822 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 PCDHA6Q9UN73 950 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 AGTPBP1Q9UPW5 1226 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 RRP15Q9Y3B9 282 aaKnown RBP4.49□□□□□ -1.69
HMGB1-204ENST00000399489 MTF2Q9Y483 593 aaPredicted RBP4.49□□□□□ -1.69
HMGB1-204ENST00000399489 HS3ST4Q9Y661 456 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 CECR2Q9BXF3 1484 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 UBE2QL1A1L167 161 aa4.48□□□□□ -1.69
HMGB1-204ENST00000399489 FCHO1O14526 889 aa4.48□□□□□ -1.69
HMGB1-204ENST00000399489 APOL3O95236 402 aa4.48□□□□□ -1.69
HMGB1-204ENST00000399489 LAMP2P13473 410 aa4.48□□□□□ -1.69
HMGB1-204ENST00000399489 IL1R1P14778 569 aa4.48□□□□□ -1.69
HMGB1-204ENST00000399489 RXRAP19793 462 aa4.48□□□□□ -1.69
HMGB1-204ENST00000399489 NNMTP40261 264 aa4.48□□□□□ -1.69
HMGB1-204ENST00000399489 RGS3P49796 1198 aa4.48□□□□□ -1.69
HMGB1-204ENST00000399489 POLE2P56282 527 aa4.48□□□□□ -1.69
HMGB1-204ENST00000399489 RBP5P82980 135 aa4.48□□□□□ -1.69
HMGB1-204ENST00000399489 KHDRBS1Q07666 443 aaKnown RBP eCLIP4.48□□□□□ -1.69
HMGB1-204ENST00000399489 PPARAQ07869 468 aa4.48□□□□□ -1.69
HMGB1-204ENST00000399489 CHAF1BQ13112 559 aa4.48□□□□□ -1.69
HMGB1-204ENST00000399489 SNAPC2Q13487 334 aa4.48□□□□□ -1.69
HMGB1-204ENST00000399489 TRIM29Q14134 588 aa4.48□□□□□ -1.69
HMGB1-204ENST00000399489 E2F5Q15329 346 aa4.48□□□□□ -1.69
HMGB1-204ENST00000399489 TBCEQ15813 527 aaPredicted RBP4.48□□□□□ -1.69
HMGB1-204ENST00000399489 KHDC1LQ5JSQ8 128 aa4.48□□□□□ -1.69
HMGB1-204ENST00000399489 RRAGBQ5VZM2 374 aa4.48□□□□□ -1.69
HMGB1-204ENST00000399489 KIAA1841Q6NSI8 718 aa4.48□□□□□ -1.69
HMGB1-204ENST00000399489 ALKBH5Q6P6C2 394 aaKnown RBP4.48□□□□□ -1.69
HMGB1-204ENST00000399489 H1FNTQ75WM6 255 aaPredicted RBP4.48□□□□□ -1.69
HMGB1-204ENST00000399489 RNF44Q7L0R7 432 aa4.48□□□□□ -1.69
HMGB1-204ENST00000399489 BMP8AQ7Z5Y6 402 aa4.48□□□□□ -1.69
HMGB1-204ENST00000399489 NLRP14Q86W24 1093 aa4.48□□□□□ -1.69
HMGB1-204ENST00000399489 MICU3Q86XE3 530 aa4.48□□□□□ -1.69
HMGB1-204ENST00000399489 ADSSL1Q8N142 457 aa4.48□□□□□ -1.69
HMGB1-204ENST00000399489 BCL6BQ8N143 479 aaPredicted RBP4.48□□□□□ -1.69
HMGB1-204ENST00000399489 SCAMP5Q8TAC9 235 aa4.48□□□□□ -1.69
HMGB1-204ENST00000399489 KCNG4Q8TDN1 519 aa4.48□□□□□ -1.69
HMGB1-204ENST00000399489 HAS1Q92839 578 aa4.48□□□□□ -1.69
HMGB1-204ENST00000399489 RAB24Q969Q5 203 aa4.48□□□□□ -1.69
HMGB1-204ENST00000399489 VRK1Q99986 396 aaPredicted RBP4.48□□□□□ -1.69
HMGB1-204ENST00000399489 C7orf25Q9BPX7 421 aa4.48□□□□□ -1.69
HMGB1-204ENST00000399489 HGH1Q9BTY7 390 aa4.48□□□□□ -1.69
HMGB1-204ENST00000399489 ADI1Q9BV57 179 aa4.48□□□□□ -1.69
HMGB1-204ENST00000399489 MAGEB5Q9BZ81 275 aa4.48□□□□□ -1.69
HMGB1-204ENST00000399489 DPH1Q9BZG8 443 aa4.48□□□□□ -1.69
HMGB1-204ENST00000399489 GREM2Q9H772 168 aa4.48□□□□□ -1.69
HMGB1-204ENST00000399489 BRF2Q9HAW0 419 aa4.48□□□□□ -1.69
HMGB1-204ENST00000399489 PIAS3Q9Y6X2 628 aa4.48□□□□□ -1.69
HMGB1-204ENST00000399489 C2orf78A6NCI8 922 aa4.47□□□□□ -1.69
HMGB1-204ENST00000399489 FAM171A2A8MVW0 826 aa4.47□□□□□ -1.69
HMGB1-204ENST00000399489 FYB1O15117 783 aa4.47□□□□□ -1.69
HMGB1-204ENST00000399489 SRGAP2O75044 1071 aa4.47□□□□□ -1.69
HMGB1-204ENST00000399489 RPS6KA4O75676 772 aa4.47□□□□□ -1.69
HMGB1-204ENST00000399489 TSPAN9O75954 239 aa4.47□□□□□ -1.69
HMGB1-204ENST00000399489 ONECUT2O95948 504 aa4.47□□□□□ -1.69
HMGB1-204ENST00000399489 ANXA1P04083 346 aa4.47□□□□□ -1.69
HMGB1-204ENST00000399489 CLEC3BP05452 202 aa4.47□□□□□ -1.69
HMGB1-204ENST00000399489 PRKCBP05771 671 aa4.47□□□□□ -1.69
HMGB1-204ENST00000399489 GSPT1P15170 499 aaKnown RBP4.47□□□□□ -1.69
HMGB1-204ENST00000399489 SCNN1GP51170 649 aa4.47□□□□□ -1.69
HMGB1-204ENST00000399489 SLC12A2P55011 1212 aa4.47□□□□□ -1.69
HMGB1-204ENST00000399489 NPEPPSP55786 919 aa4.47□□□□□ -1.69
HMGB1-204ENST00000399489 AP2B1P63010 937 aa4.47□□□□□ -1.69
HMGB1-204ENST00000399489 UBXN2AP68543 259 aa4.47□□□□□ -1.69
HMGB1-204ENST00000399489 CDC42EP1Q00587 391 aa4.47□□□□□ -1.69
HMGB1-204ENST00000399489 BFSP1Q12934 665 aa4.47□□□□□ -1.69
HMGB1-204ENST00000399489 STK4Q13043 487 aa4.47□□□□□ -1.69
HMGB1-204ENST00000399489 MTA1Q13330 715 aa4.47□□□□□ -1.69
HMGB1-204ENST00000399489 MAMLD1Q13495 774 aa4.47□□□□□ -1.69
HMGB1-204ENST00000399489 PPA1Q15181 289 aa4.47□□□□□ -1.69
HMGB1-204ENST00000399489 C5orf22Q49AR2 442 aa4.47□□□□□ -1.69
HMGB1-204ENST00000399489 ODF2Q5BJF6 829 aa4.47□□□□□ -1.69
HMGB1-204ENST00000399489 METTL24Q5JXM2 366 aa4.47□□□□□ -1.69
HMGB1-204ENST00000399489 ARL6IP4Q66PJ3 421 aaKnown RBP4.47□□□□□ -1.69
HMGB1-204ENST00000399489 BTNL9Q6UXG8 535 aa4.47□□□□□ -1.69
HMGB1-204ENST00000399489 Q6ZRM9 215 aa4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms