RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 TFDP2Q14188 446 aa11.6□□□□□ -0.55
TCOF1-203ENST00000394269 TUBB8Q3ZCM7 444 aa11.6□□□□□ -0.55
TCOF1-203ENST00000394269 ANKRD20A8PQ5CZ79 823 aa11.6□□□□□ -0.55
TCOF1-203ENST00000394269 SRLQ86TD4 932 aa11.6□□□□□ -0.55
TCOF1-203ENST00000394269 UNC93AQ86WB7 457 aa11.6□□□□□ -0.55
TCOF1-203ENST00000394269 FUKQ8N0W3 1084 aa11.6□□□□□ -0.55
TCOF1-203ENST00000394269 PLD5Q8N7P1 536 aa11.6□□□□□ -0.55
TCOF1-203ENST00000394269 CCNYQ8ND76 341 aa11.6□□□□□ -0.55
TCOF1-203ENST00000394269 PCDH19Q8TAB3 1148 aa11.6□□□□□ -0.55
TCOF1-203ENST00000394269 CPT1BQ92523 772 aa11.6□□□□□ -0.55
TCOF1-203ENST00000394269 EDEM1Q92611 657 aa11.6□□□□□ -0.55
TCOF1-203ENST00000394269 CABS1Q96KC9 395 aa11.6□□□□□ -0.55
TCOF1-203ENST00000394269 PCDH9Q9HC56 1237 aa11.6□□□□□ -0.55
TCOF1-203ENST00000394269 PADI3Q9ULW8 664 aa11.6□□□□□ -0.55
TCOF1-203ENST00000394269 MAGED2Q9UNF1 606 aaPredicted RBP11.6□□□□□ -0.55
TCOF1-203ENST00000394269 MGAMO43451 1857 aa11.6□□□□□ -0.55
TCOF1-203ENST00000394269 M0QYT0 321 aa11.6□□□□□ -0.55
TCOF1-203ENST00000394269 BRCC3P46736 316 aa11.6□□□□□ -0.55
TCOF1-203ENST00000394269 TKTL1P51854 596 aa11.6□□□□□ -0.55
TCOF1-203ENST00000394269 EFTUD2Q15029 972 aaKnown RBP eCLIP11.6□□□□□ -0.551e-10■■■■■ 73.3
TCOF1-203ENST00000394269 RNASEH2BQ5TBB1 312 aaKnown RBP11.6□□□□□ -0.55
TCOF1-203ENST00000394269 HFE2Q6ZVN8 426 aa11.6□□□□□ -0.55
TCOF1-203ENST00000394269 PDIK1LQ8N165 341 aa11.6□□□□□ -0.55
TCOF1-203ENST00000394269 ADAM2Q99965 735 aa11.6□□□□□ -0.55
TCOF1-203ENST00000394269 ELAC2Q9BQ52 826 aaKnown RBP11.6□□□□□ -0.55
TCOF1-203ENST00000394269 PCDH18Q9HCL0 1135 aa11.6□□□□□ -0.55
TCOF1-203ENST00000394269 AP4E1Q9UPM8 1137 aa11.6□□□□□ -0.55
TCOF1-203ENST00000394269 TRPV2Q9Y5S1 764 aa11.6□□□□□ -0.55
TCOF1-203ENST00000394269 LRRC37A2A6NM11 1700 aa11.59□□□□□ -0.55
TCOF1-203ENST00000394269 SCN4AP35499 1836 aa11.59□□□□□ -0.55
TCOF1-203ENST00000394269 VGLL3A8MV65 326 aa11.59□□□□□ -0.55
TCOF1-203ENST00000394269 F8W810 466 aa11.59□□□□□ -0.55
TCOF1-203ENST00000394269 CA12O43570 354 aa11.59□□□□□ -0.55
TCOF1-203ENST00000394269 AP1G2O75843 785 aa11.59□□□□□ -0.55
TCOF1-203ENST00000394269 FAM107AO95990 144 aa11.59□□□□□ -0.55
TCOF1-203ENST00000394269 GOT1P17174 413 aa11.59□□□□□ -0.55
TCOF1-203ENST00000394269 CYP2F1P24903 491 aa11.59□□□□□ -0.55
TCOF1-203ENST00000394269 PNPLA4P41247 253 aa11.59□□□□□ -0.55
TCOF1-203ENST00000394269 INHBEP58166 350 aa11.59□□□□□ -0.55
TCOF1-203ENST00000394269 C3orf58Q8NDZ4 430 aa11.59□□□□□ -0.55
TCOF1-203ENST00000394269 FBXO36Q8NEA4 188 aa11.59□□□□□ -0.55
TCOF1-203ENST00000394269 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.59□□□□□ -0.55
TCOF1-203ENST00000394269 TRAPPC3O43617 180 aa11.59□□□□□ -0.55
TCOF1-203ENST00000394269 USP17L7P0C7H9 530 aa11.59□□□□□ -0.55
TCOF1-203ENST00000394269 ARL4CP56559 192 aa11.59□□□□□ -0.55
TCOF1-203ENST00000394269 CAP1Q01518 475 aa11.59□□□□□ -0.55
TCOF1-203ENST00000394269 MORF4L2Q15014 288 aa11.59□□□□□ -0.55
TCOF1-203ENST00000394269 ERMARDQ5T6L9 678 aa11.59□□□□□ -0.55
TCOF1-203ENST00000394269 SYPL2Q5VXT5 272 aa11.59□□□□□ -0.55
TCOF1-203ENST00000394269 CTAGE3PQ8IX95 158 aa11.59□□□□□ -0.55
TCOF1-203ENST00000394269 PPIL6Q8IXY8 311 aa11.59□□□□□ -0.55
TCOF1-203ENST00000394269 OTUD6BQ8N6M0 293 aa11.59□□□□□ -0.55
TCOF1-203ENST00000394269 SLC7A14Q8TBB6 771 aa11.59□□□□□ -0.55
TCOF1-203ENST00000394269 CFAP36Q96G28 342 aa11.59□□□□□ -0.55
TCOF1-203ENST00000394269 CNOT10Q9H9A5 744 aaKnown RBP11.59□□□□□ -0.55
TCOF1-203ENST00000394269 MAD1L1Q9Y6D9 718 aa11.59□□□□□ -0.55
TCOF1-203ENST00000394269 A0A087WUV0 522 aaPredicted RBP11.58□□□□□ -0.55
TCOF1-203ENST00000394269 TMEM63AO94886 807 aa11.58□□□□□ -0.55
TCOF1-203ENST00000394269 IL4RP24394 825 aa11.58□□□□□ -0.55
TCOF1-203ENST00000394269 PKDCCQ504Y2 493 aa11.58□□□□□ -0.55
TCOF1-203ENST00000394269 HACE1Q8IYU2 909 aa11.58□□□□□ -0.55
TCOF1-203ENST00000394269 LRRC34Q8IZ02 419 aa11.58□□□□□ -0.55
TCOF1-203ENST00000394269 PRCCQ92733 491 aaPredicted RBP11.58□□□□□ -0.55
TCOF1-203ENST00000394269 RNF34Q969K3 372 aa11.58□□□□□ -0.55
TCOF1-203ENST00000394269 ROPN1BQ9BZX4 212 aaPredicted RBP11.58□□□□□ -0.55
TCOF1-203ENST00000394269 ROPN1Q9HAT0 212 aaPredicted RBP11.58□□□□□ -0.55
TCOF1-203ENST00000394269 ETNK2Q9NVF9 386 aa11.58□□□□□ -0.55
TCOF1-203ENST00000394269 RNF186Q9NXI6 227 aa11.58□□□□□ -0.55
TCOF1-203ENST00000394269 WDR91A4D1P6 747 aa11.58□□□□□ -0.56
TCOF1-203ENST00000394269 CDH16O75309 829 aa11.58□□□□□ -0.56
TCOF1-203ENST00000394269 STAU1O95793 577 aaKnown RBP11.58□□□□□ -0.56
TCOF1-203ENST00000394269 NCAM1P13591 858 aa11.58□□□□□ -0.56
TCOF1-203ENST00000394269 KCNE1P15382 129 aa11.58□□□□□ -0.56
TCOF1-203ENST00000394269 STX2P32856 288 aa11.58□□□□□ -0.56
TCOF1-203ENST00000394269 MMP13P45452 471 aa11.58□□□□□ -0.56
TCOF1-203ENST00000394269 YWHAZP63104 245 aaKnown RBP11.58□□□□□ -0.56
TCOF1-203ENST00000394269 SPDYCQ5MJ68 293 aa11.58□□□□□ -0.56
TCOF1-203ENST00000394269 KIAA0319Q5VV43 1072 aa11.58□□□□□ -0.56
TCOF1-203ENST00000394269 CYP4V2Q6ZWL3 525 aaPredicted RBP11.58□□□□□ -0.56
TCOF1-203ENST00000394269 CRYBG2Q8N1P7 616 aa11.58□□□□□ -0.56
TCOF1-203ENST00000394269 MICALL1Q8N3F8 863 aa11.58□□□□□ -0.56
TCOF1-203ENST00000394269 CHMP6Q96FZ7 201 aa11.58□□□□□ -0.56
TCOF1-203ENST00000394269 FAXDC2Q96IV6 333 aa11.58□□□□□ -0.56
TCOF1-203ENST00000394269 SERPINB12Q96P63 405 aa11.58□□□□□ -0.56
TCOF1-203ENST00000394269 NKIRAS1Q9NYS0 192 aa11.58□□□□□ -0.56
TCOF1-203ENST00000394269 FAM200BP0CF97 657 aa11.58□□□□□ -0.56
TCOF1-203ENST00000394269 NUMBP49757 651 aa11.58□□□□□ -0.56
TCOF1-203ENST00000394269 ACAP1Q15027 740 aa11.58□□□□□ -0.56
TCOF1-203ENST00000394269 PKN2Q16513 984 aaKnown RBP11.58□□□□□ -0.56
TCOF1-203ENST00000394269 AGMOQ6ZNB7 445 aa11.58□□□□□ -0.56
TCOF1-203ENST00000394269 PQLC3Q8N755 202 aa11.58□□□□□ -0.56
TCOF1-203ENST00000394269 GSTCDQ8NEC7 633 aa11.58□□□□□ -0.56
TCOF1-203ENST00000394269 LGMNQ99538 433 aa11.58□□□□□ -0.56
TCOF1-203ENST00000394269 SYT15Q9BQS2 421 aa11.58□□□□□ -0.56
TCOF1-203ENST00000394269 TRIM56Q9BRZ2 755 aaKnown RBP11.58□□□□□ -0.56
TCOF1-203ENST00000394269 ULBP1Q9BZM6 244 aa11.58□□□□□ -0.56
TCOF1-203ENST00000394269 DDX20Q9UHI6 824 aaKnown RBP11.58□□□□□ -0.56
TCOF1-203ENST00000394269 NUDT5Q9UKK9 219 aa11.58□□□□□ -0.56
TCOF1-203ENST00000394269 GOLGA6L7A0A1B0GV03 622 aa11.57□□□□□ -0.56
TCOF1-203ENST00000394269 TCP11X1B4DZS4 312 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms