RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 NPEPPSP55786 919 aa12.2□□□□□ -0.46
SYNPO-202ENST00000394243 ITGA9Q13797 1035 aa12.2□□□□□ -0.46
SYNPO-202ENST00000394243 SLC5A9Q2M3M2 681 aa12.2□□□□□ -0.46
SYNPO-202ENST00000394243 FAM228AQ86W67 206 aa12.2□□□□□ -0.46
SYNPO-202ENST00000394243 CACTIN-AS1Q8N1I8 211 aa12.2□□□□□ -0.46
SYNPO-202ENST00000394243 SLC7A14Q8TBB6 771 aa12.2□□□□□ -0.46
SYNPO-202ENST00000394243 RPRD1BQ9NQG5 326 aaKnown RBP12.2□□□□□ -0.46
SYNPO-202ENST00000394243 FARP1Q9Y4F1 1045 aaPredicted RBP12.2□□□□□ -0.46
SYNPO-202ENST00000394243 ENTPD5O75356 428 aa12.2□□□□□ -0.46
SYNPO-202ENST00000394243 BBOX1O75936 387 aa12.2□□□□□ -0.46
SYNPO-202ENST00000394243 KRT36O76013 467 aa12.2□□□□□ -0.46
SYNPO-202ENST00000394243 SEC24AO95486 1093 aa12.2□□□□□ -0.46
SYNPO-202ENST00000394243 TFRCP02786 760 aaKnown RBP12.2□□□□□ -0.46
SYNPO-202ENST00000394243 PKNOX1P55347 436 aa12.2□□□□□ -0.46
SYNPO-202ENST00000394243 STILQ15468 1287 aa12.2□□□□□ -0.46
SYNPO-202ENST00000394243 ERO1BQ86YB8 467 aa12.2□□□□□ -0.46
SYNPO-202ENST00000394243 FAM120BQ96EK7 910 aaKnown RBP12.2□□□□□ -0.46
SYNPO-202ENST00000394243 KIFC1Q9BW19 673 aa12.2□□□□□ -0.46
SYNPO-202ENST00000394243 RGS18Q9NS28 235 aa12.2□□□□□ -0.46
SYNPO-202ENST00000394243 NCKIPSDQ9NZQ3 722 aa12.2□□□□□ -0.46
SYNPO-202ENST00000394243 PNMA3Q9UL41 463 aa12.2□□□□□ -0.46
SYNPO-202ENST00000394243 HEG1Q9ULI3 1381 aa12.2□□□□□ -0.46
SYNPO-202ENST00000394243 PRR23AA6NEV1 266 aa12.2□□□□□ -0.46
SYNPO-202ENST00000394243 CCDC182A6NF36 153 aa12.2□□□□□ -0.46
SYNPO-202ENST00000394243 GUCY1B2O75343 617 aa12.2□□□□□ -0.46
SYNPO-202ENST00000394243 RPL5P46777 297 aaKnown RBP12.2□□□□□ -0.46
SYNPO-202ENST00000394243 RPL21P46778 160 aaKnown RBP12.2□□□□□ -0.46
SYNPO-202ENST00000394243 FASTKQ14296 549 aaKnown RBP12.2□□□□□ -0.46
SYNPO-202ENST00000394243 ZNF560Q96MR9 790 aa12.2□□□□□ -0.46
SYNPO-202ENST00000394243 TBC1D10AQ9BXI6 508 aa12.2□□□□□ -0.46
SYNPO-202ENST00000394243 GDF3Q9NR23 364 aa12.2□□□□□ -0.46
SYNPO-202ENST00000394243 PCDHA10Q9Y5I2 948 aa12.2□□□□□ -0.46
SYNPO-202ENST00000394243 KIAA0391O15091 583 aaKnown RBP12.19□□□□□ -0.46
SYNPO-202ENST00000394243 ASMTLO95671 621 aa12.19□□□□□ -0.46
SYNPO-202ENST00000394243 PRKCBP05771 671 aa12.19□□□□□ -0.46
SYNPO-202ENST00000394243 CCNHP51946 323 aaPredicted RBP12.19□□□□□ -0.46
SYNPO-202ENST00000394243 TSNQ15631 228 aaKnown RBP12.19□□□□□ -0.46
SYNPO-202ENST00000394243 HS6ST3Q8IZP7 471 aa12.19□□□□□ -0.46
SYNPO-202ENST00000394243 SETD9Q8NE22 299 aa12.19□□□□□ -0.46
SYNPO-202ENST00000394243 WRNIP1Q96S55 665 aa12.19□□□□□ -0.46
SYNPO-202ENST00000394243 TRMT6Q9UJA5 497 aaKnown RBP12.19□□□□□ -0.46
SYNPO-202ENST00000394243 STON1Q9Y6Q2 735 aa12.19□□□□□ -0.46
SYNPO-202ENST00000394243 EIF3DO15371 548 aaKnown RBP eCLIP12.19□□□□□ -0.46
SYNPO-202ENST00000394243 GALK1P51570 392 aa12.19□□□□□ -0.46
SYNPO-202ENST00000394243 NR1H2P55055 460 aa12.19□□□□□ -0.46
SYNPO-202ENST00000394243 ERVK-9P63128 1117 aa12.19□□□□□ -0.46
SYNPO-202ENST00000394243 N4BP2L1Q5TBK1 243 aaPredicted RBP12.19□□□□□ -0.46
SYNPO-202ENST00000394243 CWF19L1Q69YN2 538 aaKnown RBP12.19□□□□□ -0.46
SYNPO-202ENST00000394243 LLGL2Q6P1M3 1020 aa12.19□□□□□ -0.46
SYNPO-202ENST00000394243 KIAA0408Q6ZU52 694 aa12.19□□□□□ -0.46
SYNPO-202ENST00000394243 NET1Q7Z628 596 aaPredicted RBP12.19□□□□□ -0.46
SYNPO-202ENST00000394243 DNAAF5Q86Y56 855 aa12.19□□□□□ -0.46
SYNPO-202ENST00000394243 TBC1D19Q8N5T2 526 aa12.19□□□□□ -0.46
SYNPO-202ENST00000394243 DPP10Q8N608 796 aa12.19□□□□□ -0.46
SYNPO-202ENST00000394243 CITED4Q96RK1 184 aa12.19□□□□□ -0.46
SYNPO-202ENST00000394243 ARHGAP20Q9P2F6 1191 aa12.19□□□□□ -0.46
SYNPO-202ENST00000394243 PALLDQ8WX93 1383 aa12.19□□□□□ -0.46
SYNPO-202ENST00000394243 POLR1AO95602 1720 aaPredicted RBP12.19□□□□□ -0.46
SYNPO-202ENST00000394243 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.19□□□□□ -0.46
SYNPO-202ENST00000394243 F5H6K3 240 aa12.19□□□□□ -0.46
SYNPO-202ENST00000394243 RGS20O76081 388 aa12.19□□□□□ -0.46
SYNPO-202ENST00000394243 TTKP33981 857 aa12.19□□□□□ -0.46
SYNPO-202ENST00000394243 ETFBP38117 255 aa12.19□□□□□ -0.46
SYNPO-202ENST00000394243 LSM3P62310 102 aaKnown RBP12.19□□□□□ -0.46
SYNPO-202ENST00000394243 KLRC3Q07444 240 aa12.19□□□□□ -0.46
SYNPO-202ENST00000394243 SNX32Q86XE0 403 aa12.19□□□□□ -0.46
SYNPO-202ENST00000394243 TIPINQ9BVW5 301 aa12.19□□□□□ -0.46
SYNPO-202ENST00000394243 FRMD8P1Q9BZ68 369 aaPredicted RBP12.19□□□□□ -0.46
SYNPO-202ENST00000394243 LGR5O75473 907 aa12.19□□□□□ -0.46
SYNPO-202ENST00000394243 RPS6KA5O75582 802 aa12.19□□□□□ -0.46
SYNPO-202ENST00000394243 UNC5CO95185 931 aa12.19□□□□□ -0.46
SYNPO-202ENST00000394243 ABCB1P08183 1280 aaPredicted RBP12.19□□□□□ -0.46
SYNPO-202ENST00000394243 PSMA3P25788 255 aa12.19□□□□□ -0.46
SYNPO-202ENST00000394243 DDX39BQ13838 428 aaKnown RBP12.19□□□□□ -0.46
SYNPO-202ENST00000394243 TATDN2Q93075 761 aa12.19□□□□□ -0.46
SYNPO-202ENST00000394243 TMEM143Q96AN5 459 aa12.19□□□□□ -0.46
SYNPO-202ENST00000394243 EPB41L1Q9H4G0 881 aa12.19□□□□□ -0.46
SYNPO-202ENST00000394243 KLHL1Q9NR64 748 aa12.19□□□□□ -0.46
SYNPO-202ENST00000394243 VAV3Q9UKW4 847 aa12.19□□□□□ -0.46
SYNPO-202ENST00000394243 WDR62O43379 1518 aa12.19□□□□□ -0.46
SYNPO-202ENST00000394243 ERVV-1B6SEH8 477 aa12.19□□□□□ -0.46
SYNPO-202ENST00000394243 CNTN1Q12860 1018 aa12.19□□□□□ -0.46
SYNPO-202ENST00000394243 SCARF1Q14162 830 aa12.19□□□□□ -0.46
SYNPO-202ENST00000394243 SNRNP48Q6IEG0 339 aaKnown RBP12.19□□□□□ -0.46
SYNPO-202ENST00000394243 MZT2BQ6NZ67 158 aa12.19□□□□□ -0.46
SYNPO-202ENST00000394243 PRMT9Q6P2P2 845 aa12.19□□□□□ -0.46
SYNPO-202ENST00000394243 TTC30AQ86WT1 665 aa12.19□□□□□ -0.46
SYNPO-202ENST00000394243 SEMA4DQ92854 862 aa12.19□□□□□ -0.46
SYNPO-202ENST00000394243 FAM136AQ96C01 138 aa12.19□□□□□ -0.46
SYNPO-202ENST00000394243 SPATA16Q9BXB7 569 aa12.19□□□□□ -0.46
SYNPO-202ENST00000394243 UBA2Q9UBT2 640 aaPredicted RBP12.19□□□□□ -0.46
SYNPO-202ENST00000394243 ASNSP08243 561 aa12.19□□□□□ -0.46
SYNPO-202ENST00000394243 ANPEPP15144 967 aa12.19□□□□□ -0.46
SYNPO-202ENST00000394243 S100A1P23297 94 aa12.19□□□□□ -0.46
SYNPO-202ENST00000394243 EFNA5P52803 228 aa12.19□□□□□ -0.46
SYNPO-202ENST00000394243 IZUMO1Q8IYV9 350 aa12.19□□□□□ -0.46
SYNPO-202ENST00000394243 TCAIMQ8N3R3 496 aa12.19□□□□□ -0.46
SYNPO-202ENST00000394243 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.19□□□□□ -0.46
SYNPO-202ENST00000394243 AK5Q9Y6K8 562 aa12.19□□□□□ -0.46
SYNPO-202ENST00000394243 ZC3H4Q9UPT8 1303 aaKnown RBP12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms