RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 PHLDB2Q86SQ0 1253 aa11.59□□□□□ -0.55
CUX1-204ENST00000393824 CCDC110Q8TBZ0 833 aa11.59□□□□□ -0.55
CUX1-204ENST00000393824 EPS8L1Q8TE68 723 aa11.59□□□□□ -0.55
CUX1-204ENST00000393824 C17orf50Q8WW18 174 aa11.59□□□□□ -0.55
CUX1-204ENST00000393824 DGCR14Q96DF8 476 aaKnown RBP11.59□□□□□ -0.55
CUX1-204ENST00000393824 BTBD6Q96KE9 485 aa11.59□□□□□ -0.55
CUX1-204ENST00000393824 NTPCRQ9BSD7 190 aaKnown RBP11.59□□□□□ -0.55
CUX1-204ENST00000393824 MAK16Q9BXY0 300 aaKnown RBP11.59□□□□□ -0.55
CUX1-204ENST00000393824 KMT5AQ9NQR1 393 aa11.59□□□□□ -0.55
CUX1-204ENST00000393824 ARHGAP28Q9P2N2 729 aa11.59□□□□□ -0.55
CUX1-204ENST00000393824 Q9Y3F1 56 aa11.59□□□□□ -0.55
CUX1-204ENST00000393824 A0A1W2PPM1 405 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 LRRIQ4A6NIV6 560 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 TREHO43280 583 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 AP1G1O43747 822 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 ASGR1P07306 291 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 ZNF24P17028 368 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 PAX3P23760 479 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 SLC1A1P43005 524 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 LAMTOR4Q0VGL1 99 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 KCNA10Q16322 511 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 CCNG2Q16589 344 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 ARHGEF19Q8IW93 802 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 RNF149Q8NC42 400 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 PIP4K2CQ8TBX8 421 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 WNT8BQ93098 351 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 FAM161BQ96MY7 647 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 CBWD1Q9BRT8 395 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 UNC93B1Q9H1C4 597 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 UPF3AQ9H1J1 476 aaKnown RBP11.58□□□□□ -0.56
CUX1-204ENST00000393824 MANSC1Q9H8J5 431 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 C17orf75Q9HAS0 396 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 ARHGEF4Q9NR80 690 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 TRIP12Q14669 1992 aaPredicted RBP11.58□□□□□ -0.56
CUX1-204ENST00000393824 KIAA0100Q14667 2235 aaKnown RBP11.58□□□□□ -0.56
CUX1-204ENST00000393824 TM9SF1O15321 606 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 ATMINO43313 823 aaPredicted RBP11.58□□□□□ -0.56
CUX1-204ENST00000393824 FKBP6O75344 327 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 TM7SF2O76062 418 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 IL1BP01584 269 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 DLDP09622 509 aaKnown RBP11.58□□□□□ -0.56
CUX1-204ENST00000393824 KLRC2P26717 231 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 GRIA2P42262 883 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 PIK3CAP42336 1068 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 VPS41P49754 854 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 PSEN2P49810 448 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 MFAP3P55082 362 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 RPL26P61254 145 aaKnown RBP11.58□□□□□ -0.56
CUX1-204ENST00000393824 ADAM17P78536 824 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 HPCAP84074 193 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 ZBTB16Q05516 673 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 OVGP1Q12889 678 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 KLF1Q13351 362 aaPredicted RBP11.58□□□□□ -0.56
CUX1-204ENST00000393824 LLGL1Q15334 1064 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 CFAP157Q5JU67 520 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 C6orf163Q5TEZ5 329 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 AAGABQ6PD74 315 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 LRRC6Q86X45 466 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 PDSS2Q86YH6 399 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 KIAA0319LQ8IZA0 1049 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 KLHDC9Q8NEP7 349 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 ZNF653Q96CK0 615 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 FAM84AQ96KN4 292 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 NLRP4Q96MN2 994 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 HERPUD2Q9BSE4 406 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 HAPLN2Q9GZV7 340 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 EBF3Q9H4W6 596 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 CDHR5Q9HBB8 845 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 FBXO6Q9NRD1 293 aaPredicted RBP11.58□□□□□ -0.56
CUX1-204ENST00000393824 FETUBQ9UGM5 382 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 TBX20Q9UMR3 447 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 POLIQ9UNA4 740 aa11.58□□□□□ -0.56
CUX1-204ENST00000393824 SGPL1O95470 568 aa11.57□□□□□ -0.56
CUX1-204ENST00000393824 GNRH1P01148 92 aa11.57□□□□□ -0.56
CUX1-204ENST00000393824 HARSP12081 509 aaKnown RBP11.57□□□□□ -0.56
CUX1-204ENST00000393824 KRT4P19013 534 aa11.57□□□□□ -0.56
CUX1-204ENST00000393824 EIF4BP23588 611 aaKnown RBP11.57□□□□□ -0.56
CUX1-204ENST00000393824 ADRA1DP25100 572 aa11.57□□□□□ -0.56
CUX1-204ENST00000393824 XIAPP98170 497 aa11.57□□□□□ -0.56
CUX1-204ENST00000393824 FMO1Q01740 532 aa11.57□□□□□ -0.56
CUX1-204ENST00000393824 ASPHQ12797 758 aa11.57□□□□□ -0.56
CUX1-204ENST00000393824 MED21Q13503 144 aa11.57□□□□□ -0.56
CUX1-204ENST00000393824 ACAD10Q6JQN1 1059 aa11.57□□□□□ -0.56
CUX1-204ENST00000393824 RIPOR1Q6ZS17 1223 aa11.57□□□□□ -0.56
CUX1-204ENST00000393824 CDR2LQ86X02 465 aaPredicted RBP11.57□□□□□ -0.56
CUX1-204ENST00000393824 SCUBE1Q8IWY4 988 aa11.57□□□□□ -0.56
CUX1-204ENST00000393824 LRRC43Q8N309 656 aa11.57□□□□□ -0.56
CUX1-204ENST00000393824 SPIRE2Q8WWL2 714 aa11.57□□□□□ -0.56
CUX1-204ENST00000393824 SHC3Q92529 594 aa11.57□□□□□ -0.56
CUX1-204ENST00000393824 PRR11Q96HE9 360 aaPredicted RBP11.57□□□□□ -0.56
CUX1-204ENST00000393824 MPP4Q96JB8 637 aa11.57□□□□□ -0.56
CUX1-204ENST00000393824 CATSPER2Q96P56 530 aa11.57□□□□□ -0.56
CUX1-204ENST00000393824 PANX3Q96QZ0 392 aa11.57□□□□□ -0.56
CUX1-204ENST00000393824 TMEM120AQ9BXJ8 343 aa11.57□□□□□ -0.56
CUX1-204ENST00000393824 FAM49AQ9H0Q0 323 aaPredicted RBP11.57□□□□□ -0.56
CUX1-204ENST00000393824 PCIF1Q9H4Z3 704 aa11.57□□□□□ -0.56
CUX1-204ENST00000393824 IFT122Q9HBG6 1241 aa11.57□□□□□ -0.56
CUX1-204ENST00000393824 SAYSD1Q9NPB0 183 aa11.57□□□□□ -0.56
CUX1-204ENST00000393824 AVENQ9NQS1 362 aaPredicted RBP11.57□□□□□ -0.56
CUX1-204ENST00000393824 PCDH10Q9P2E7 1040 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms