RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 SRBD1Q8N5C6 995 aaKnown RBP8.98□□□□□ -0.97
LIG3-202ENST00000378526 PCDH19Q8TAB3 1148 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 PI4K2BQ8TCG2 481 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 MAGEE2Q8TD90 523 aaPredicted RBP8.98□□□□□ -0.97
LIG3-202ENST00000378526 C3orf70A6NLC5 250 aaPredicted RBP8.98□□□□□ -0.97
LIG3-202ENST00000378526 KCNN4O15554 427 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 VCLP18206 1134 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 RORAP35398 523 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 PTDSS1P48651 473 aaKnown RBP8.98□□□□□ -0.97
LIG3-202ENST00000378526 NAA20P61599 178 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 MAD2L1Q13257 205 aaPredicted RBP8.98□□□□□ -0.97
LIG3-202ENST00000378526 HERC3Q15034 1050 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 HKDC1Q2TB90 917 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 LCN1P1Q5VSP4 162 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 C1orf94Q6P1W5 598 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 LINC00523Q86TU6 105 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 LRRC71Q8N4P6 559 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 KBTBD7Q8WVZ9 684 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 ZNF350Q9GZX5 532 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 PAK5Q9P286 719 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 CYTH4Q9UIA0 394 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 COQ6Q9Y2Z9 468 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 SSX4O60224 188 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 KDM4BO94953 1096 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 PRKACAP17612 351 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 TFAMQ00059 246 aaKnown RBP8.98□□□□□ -0.97
LIG3-202ENST00000378526 VPS72Q15906 364 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 ATP6AP1LQ52LC2 224 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 CCDC71Q8IV32 467 aaPredicted RBP8.98□□□□□ -0.97
LIG3-202ENST00000378526 SLC22A9Q8IVM8 553 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 C4orf33Q8N1A6 199 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 CIDECQ96AQ7 238 aaPredicted RBP8.98□□□□□ -0.97
LIG3-202ENST00000378526 HEMGNQ9BXL5 484 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 PRDM8Q9NQV8 689 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 C3orf18Q9UK00 162 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 NDUFS3O75489 264 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 ZNF682O95780 498 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 ME2P23368 584 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 POU1F1P28069 291 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 RFC4P35249 363 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 RIPK1Q13546 671 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 SKIV2LQ15477 1246 aaKnown RBP8.98□□□□□ -0.97
LIG3-202ENST00000378526 SSX2Q16385 188 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 SLC13A5Q86YT5 568 aaPredicted RBP8.98□□□□□ -0.97
LIG3-202ENST00000378526 RBM12BQ8IXT5 1001 aaKnown RBP8.98□□□□□ -0.97
LIG3-202ENST00000378526 HPF1Q9NWY4 346 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 PIK3C2GO75747 1445 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 RPS6KA5O75582 802 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 PRH1P02810 166 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 LYNP07948 512 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 PSMC5P62195 406 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 PIGHQ14442 188 aaPredicted RBP8.98□□□□□ -0.97
LIG3-202ENST00000378526 ZNF699Q32M78 642 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 SNRNP48Q6IEG0 339 aaKnown RBP8.98□□□□□ -0.97
LIG3-202ENST00000378526 FAM220AQ7Z4H9 259 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP8.98□□□□□ -0.975e-6■■■■■ 81.8
LIG3-202ENST00000378526 MCFD2Q8NI22 146 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 A1CFQ9NQ94 594 aaKnown RBP8.98□□□□□ -0.97
LIG3-202ENST00000378526 SNX8Q9Y5X2 465 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 PEG3Q9GZU2 1588 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 HS6ST1O60243 411 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 PSMG1O95456 288 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 VDRP11473 427 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 HSD17B4P51659 736 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 AFF1P51825 1210 aaKnown RBP8.98□□□□□ -0.97
LIG3-202ENST00000378526 COBLL1Q53SF7 1204 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 PDPK2PQ6A1A2 396 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 C12orf56Q8IXR9 622 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 ATPAF2Q8N5M1 289 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 ZNF655Q8N720 491 aaPredicted RBP8.98□□□□□ -0.97
LIG3-202ENST00000378526 PAGE5Q96GU1 130 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 CST11Q9H112 138 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 SH3GLB2Q9NR46 395 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 AXIN2Q9Y2T1 843 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 BMP10O95393 424 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 ACAT1P24752 427 aaKnown RBP8.98□□□□□ -0.97
LIG3-202ENST00000378526 SDC4P31431 198 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 RBM34P42696 430 aaKnown RBP8.98□□□□□ -0.97
LIG3-202ENST00000378526 PTSQ03393 145 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 KRT24Q2M2I5 525 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 ZNF394Q53GI3 561 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 C6orf183Q5T699 404 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 FAM228AQ86W67 206 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 CCNJLQ8IV13 435 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 PHC2Q8IXK0 858 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 FAR1Q8WVX9 515 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 WDR24Q96S15 920 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 MLXIPQ9HAP2 919 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 TMBIM4Q9HC24 238 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 KLHL28Q9NXS3 571 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 PTTG2Q9NZH5 202 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 CCRL2O00421 344 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 PDPK1O15530 556 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 RECQL5O94762 991 aaPredicted RBP8.97□□□□□ -0.97
LIG3-202ENST00000378526 NNMTP40261 264 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 MAPK12P53778 367 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 HIST2H2ACQ16777 129 aaPredicted RBP8.97□□□□□ -0.97
LIG3-202ENST00000378526 HIST2H2AA3Q6FI13 130 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 RHBDF1Q96CC6 855 aa8.97□□□□□ -0.97
LIG3-202ENST00000378526 NUDT16Q96DE0 195 aaKnown RBP8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms