RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 C11orf63Q6NUN7 778 aa11.98□□□□□ -0.49
SYNE1-204ENST00000367248 TMEM86AQ8N2M4 240 aa11.98□□□□□ -0.49
SYNE1-204ENST00000367248 VPS9D1Q9Y2B5 631 aa11.98□□□□□ -0.49
SYNE1-204ENST00000367248 KIF20BQ96Q89 1820 aa11.98□□□□□ -0.49
SYNE1-204ENST00000367248 ROBO3Q96MS0 1386 aa11.98□□□□□ -0.49
SYNE1-204ENST00000367248 LRRC10BA6NIK2 292 aa11.98□□□□□ -0.49
SYNE1-204ENST00000367248 CCDC22O60826 627 aa11.98□□□□□ -0.49
SYNE1-204ENST00000367248 ZNF280AP59817 542 aaPredicted RBP11.98□□□□□ -0.49
SYNE1-204ENST00000367248 ACTL9Q8TC94 416 aa11.98□□□□□ -0.49
SYNE1-204ENST00000367248 TRIM15Q9C019 465 aa11.98□□□□□ -0.49
SYNE1-204ENST00000367248 TLE6Q9H808 572 aa11.98□□□□□ -0.49
SYNE1-204ENST00000367248 UBP1Q9NZI7 540 aa11.98□□□□□ -0.49
SYNE1-204ENST00000367248 CCR1P32246 355 aa11.98□□□□□ -0.49
SYNE1-204ENST00000367248 TUFMP49411 452 aaKnown RBP11.98□□□□□ -0.49
SYNE1-204ENST00000367248 ITGA7Q13683 1181 aa11.98□□□□□ -0.49
SYNE1-204ENST00000367248 NFIL3Q16649 462 aa11.98□□□□□ -0.49
SYNE1-204ENST00000367248 CBWD6Q4V339 395 aa11.98□□□□□ -0.49
SYNE1-204ENST00000367248 CBWD3Q5JTY5 395 aa11.98□□□□□ -0.49
SYNE1-204ENST00000367248 CBWD5Q5RIA9 395 aa11.98□□□□□ -0.49
SYNE1-204ENST00000367248 SH3BP5LQ7L8J4 393 aa11.98□□□□□ -0.49
SYNE1-204ENST00000367248 UNC93AQ86WB7 457 aa11.98□□□□□ -0.49
SYNE1-204ENST00000367248 MIPOL1Q8TD10 442 aa11.98□□□□□ -0.49
SYNE1-204ENST00000367248 KLRC4O43908 158 aa11.98□□□□□ -0.49
SYNE1-204ENST00000367248 ZBTB48P10074 688 aaPredicted RBP11.98□□□□□ -0.49
SYNE1-204ENST00000367248 CASP5P51878 434 aa11.98□□□□□ -0.49
SYNE1-204ENST00000367248 TERF2Q15554 542 aa11.98□□□□□ -0.49
SYNE1-204ENST00000367248 SDHAF4Q5VUM1 108 aa11.98□□□□□ -0.49
SYNE1-204ENST00000367248 XPO6Q96QU8 1125 aaKnown RBP11.98□□□□□ -0.49
SYNE1-204ENST00000367248 CACNA2D2Q9NY47 1150 aa11.98□□□□□ -0.49
SYNE1-204ENST00000367248 SUFUQ9UMX1 484 aa11.98□□□□□ -0.49
SYNE1-204ENST00000367248 AAR2Q9Y312 384 aaKnown RBP11.98□□□□□ -0.49
SYNE1-204ENST00000367248 RPS6KL1Q9Y6S9 549 aa11.98□□□□□ -0.49
SYNE1-204ENST00000367248 PDZK1P1A8MUH7 402 aa11.97□□□□□ -0.49
SYNE1-204ENST00000367248 E2F6O75461 281 aa11.97□□□□□ -0.49
SYNE1-204ENST00000367248 PRKCZQ05513 592 aa11.97□□□□□ -0.49
SYNE1-204ENST00000367248 STX3Q13277 289 aa11.97□□□□□ -0.49
SYNE1-204ENST00000367248 TRADDQ15628 312 aa11.97□□□□□ -0.49
SYNE1-204ENST00000367248 LRRC55Q6ZSA7 311 aa11.97□□□□□ -0.49
SYNE1-204ENST00000367248 DENND5BQ6ZUT9 1274 aa11.97□□□□□ -0.49
SYNE1-204ENST00000367248 NT5DC3Q86UY8 548 aa11.97□□□□□ -0.49
SYNE1-204ENST00000367248 FAM124AQ86V42 546 aa11.97□□□□□ -0.49
SYNE1-204ENST00000367248 VMP1Q96GC9 406 aa11.97□□□□□ -0.49
SYNE1-204ENST00000367248 EML4Q9HC35 981 aaKnown RBP11.97□□□□□ -0.49
SYNE1-204ENST00000367248 UBR1Q8IWV7 1749 aa11.97□□□□□ -0.49
SYNE1-204ENST00000367248 YWHAQP27348 245 aa11.97□□□□□ -0.49
SYNE1-204ENST00000367248 PTENP60484 403 aa11.97□□□□□ -0.49
SYNE1-204ENST00000367248 ANO5Q75V66 913 aa11.97□□□□□ -0.49
SYNE1-204ENST00000367248 UNC45BQ8IWX7 931 aa11.97□□□□□ -0.49
SYNE1-204ENST00000367248 TNS4Q8IZW8 715 aa11.97□□□□□ -0.49
SYNE1-204ENST00000367248 SH2D3CQ8N5H7 860 aa11.97□□□□□ -0.49
SYNE1-204ENST00000367248 GLIS3Q8NEA6 775 aa11.97□□□□□ -0.49
SYNE1-204ENST00000367248 NFKBIEO00221 500 aa11.97□□□□□ -0.49
SYNE1-204ENST00000367248 NDUFB5O43674 189 aa11.97□□□□□ -0.49
SYNE1-204ENST00000367248 USP2O75604 605 aaPredicted RBP11.97□□□□□ -0.49
SYNE1-204ENST00000367248 ADIGQ0VDE8 80 aa11.97□□□□□ -0.49
SYNE1-204ENST00000367248 SPRYD7Q5W111 196 aa11.97□□□□□ -0.49
SYNE1-204ENST00000367248 PAPD7Q5XG87 772 aaKnown RBP11.97□□□□□ -0.49
SYNE1-204ENST00000367248 NCF1BA6NI72 391 aaPredicted RBP11.97□□□□□ -0.49
SYNE1-204ENST00000367248 NCF1CA8MVU1 366 aaPredicted RBP11.97□□□□□ -0.49
SYNE1-204ENST00000367248 INHAP05111 366 aa11.97□□□□□ -0.49
SYNE1-204ENST00000367248 ADRB2P07550 413 aa11.97□□□□□ -0.49
SYNE1-204ENST00000367248 NCF1P14598 390 aaPredicted RBP11.97□□□□□ -0.49
SYNE1-204ENST00000367248 MAPRE2Q15555 327 aa11.97□□□□□ -0.49
SYNE1-204ENST00000367248 MRNIPQ6NTE8 343 aa11.97□□□□□ -0.49
SYNE1-204ENST00000367248 GET4Q7L5D6 327 aaPredicted RBP11.97□□□□□ -0.49
SYNE1-204ENST00000367248 DEFB106AQ8N104 65 aa11.97□□□□□ -0.49
SYNE1-204ENST00000367248 SERPINB11Q96P15 392 aa11.97□□□□□ -0.49
SYNE1-204ENST00000367248 NDOR1Q9UHB4 597 aa11.97□□□□□ -0.49
SYNE1-204ENST00000367248 DDX3XO00571 662 aaKnown RBP eCLIP11.97□□□□□ -0.49
SYNE1-204ENST00000367248 FGBP02675 491 aa11.97□□□□□ -0.49
SYNE1-204ENST00000367248 SPATA31C1P0DKV0 1188 aa11.97□□□□□ -0.49
SYNE1-204ENST00000367248 GUCY1A3Q02108 690 aa11.97□□□□□ -0.49
SYNE1-204ENST00000367248 COL9A3Q14050 684 aaPredicted RBP11.97□□□□□ -0.49
SYNE1-204ENST00000367248 HIC1Q14526 733 aa11.97□□□□□ -0.49
SYNE1-204ENST00000367248 ANGPTL2Q9UKU9 493 aa11.97□□□□□ -0.49
SYNE1-204ENST00000367248 RIPK3Q9Y572 518 aa11.97□□□□□ -0.49
SYNE1-204ENST00000367248 MOXD2PA6NHM9 499 aa11.96□□□□□ -0.49
SYNE1-204ENST00000367248 TRDMT1O14717 391 aaKnown RBP11.96□□□□□ -0.49
SYNE1-204ENST00000367248 RHOBTB1O94844 696 aa11.96□□□□□ -0.49
SYNE1-204ENST00000367248 KRT4P19013 534 aa11.96□□□□□ -0.49
SYNE1-204ENST00000367248 KCNA10Q16322 511 aa11.96□□□□□ -0.49
SYNE1-204ENST00000367248 ZNF284Q2VY69 593 aa11.96□□□□□ -0.49
SYNE1-204ENST00000367248 EEF1DP3Q658K8 133 aa11.96□□□□□ -0.49
SYNE1-204ENST00000367248 LRRC6Q86X45 466 aa11.96□□□□□ -0.49
SYNE1-204ENST00000367248 AHCYL2Q96HN2 611 aaKnown RBP11.96□□□□□ -0.49
SYNE1-204ENST00000367248 CDK5RAP1Q96SZ6 601 aaKnown RBP11.96□□□□□ -0.49
SYNE1-204ENST00000367248 MAN1C1Q9NR34 630 aa11.96□□□□□ -0.49
SYNE1-204ENST00000367248 HEATR9A2RTY3 570 aa11.96□□□□□ -0.49
SYNE1-204ENST00000367248 CCDC130P13994 396 aa11.96□□□□□ -0.49
SYNE1-204ENST00000367248 PHEXP78562 749 aa11.96□□□□□ -0.49
SYNE1-204ENST00000367248 EFTUD2Q15029 972 aaKnown RBP eCLIP11.96□□□□□ -0.49
SYNE1-204ENST00000367248 CCNG2Q16589 344 aa11.96□□□□□ -0.49
SYNE1-204ENST00000367248 MTMR8Q96EF0 704 aa11.96□□□□□ -0.49
SYNE1-204ENST00000367248 SPACA7Q96KW9 195 aa11.96□□□□□ -0.49
SYNE1-204ENST00000367248 NAT9Q9BTE0 207 aa11.96□□□□□ -0.49
SYNE1-204ENST00000367248 NT5MQ9NPB1 228 aa11.96□□□□□ -0.49
SYNE1-204ENST00000367248 AVENQ9NQS1 362 aaPredicted RBP11.96□□□□□ -0.49
SYNE1-204ENST00000367248 TRIM49D1C9J1S8 452 aa11.96□□□□□ -0.49
SYNE1-204ENST00000367248 PPP1R11O60927 126 aaPredicted RBP11.96□□□□□ -0.49
SYNE1-204ENST00000367248 ITGB6P18564 788 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms