RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 CYP11B2P19099 503 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 STIP1P31948 543 aaKnown RBP7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 HTRA4P83105 476 aaPredicted RBP7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 ARHGAP11BQ3KRB8 267 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 FAM47CQ5HY64 1035 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 MEI1Q5TIA1 1274 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 MSANTD2Q6P1R3 559 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 KCNIP4Q6PIL6 250 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 POTEGQ6S5H5 508 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 CATSPER4Q7RTX7 472 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 MAPKAPK5Q8IW41 473 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 UEVLDQ8IX04 471 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 CYP4Z2PQ8N1L4 340 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 FAM149B1Q96BN6 582 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 OSBPL8Q9BZF1 889 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 BABAM1Q9NWV8 329 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 CDH7Q9ULB5 785 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 RPS10-NUDT3A0A1W2PQS6 291 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 A8MVJ9 347 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 H0YJX3 145 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 WWP2O00308 870 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 PSMD10O75832 226 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 NUDT3O95989 172 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 CLPTM1O96005 669 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 NR2C1P13056 603 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 KCNA5P22460 613 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 DGKDQ16760 1214 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 TMEM53Q6P2H8 277 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 AAGABQ6PD74 315 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 TOGARAM2Q6ZUX3 1019 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 SMIM5Q71RC9 77 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 SNX31Q8N9S9 440 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 C3orf58Q8NDZ4 430 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 MAGEC3Q8TD91 643 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 CKLFQ9UBR5 152 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 PNMA8CA0A1B0GUJ8 204 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 APOA2P02652 100 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 CYP2C9P11712 490 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 DPYDQ12882 1025 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 SLC29A2Q14542 456 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 FGD3Q5JSP0 725 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 Q6ZUG5 572 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 VTCN1Q7Z7D3 282 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 TTC7BQ86TV6 843 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 STOML3Q8TAV4 291 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 NEK9Q8TD19 979 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 ARHGEF26Q96DR7 871 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 CLPTM1LQ96KA5 538 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 FAM111AQ96PZ2 611 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 SHCBP1LQ9BZQ2 653 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 AHSPQ9NZD4 102 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 SPATA7Q9P0W8 599 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 PCDH10Q9P2E7 1040 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 H0YIV9 168 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 PIK3R2O00459 728 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 MYL12BO14950 172 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 GATCO43716 136 aaKnown RBP7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 RBL1P28749 1068 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 CHRNB4P30926 498 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 GDI1P31150 447 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 EMC2Q15006 297 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 ZC2HC1CQ53FD0 456 aaPredicted RBP7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 NIPAL1Q6NVV3 410 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 OTOAQ7RTW8 1153 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 KANSL1Q7Z3B3 1105 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 PRPF39Q86UA1 669 aaKnown RBP7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 C12orf56Q8IXR9 622 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 C7orf31Q8N865 590 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 FAM46DQ8NEK8 389 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 VANGL1Q8TAA9 524 aaPredicted RBP7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 CENPBD1B2RD01 187 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 PITPNM1O00562 1244 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 DLATP10515 647 aaKnown RBP7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 NPR3P17342 541 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 RPL7P18124 248 aaKnown RBP7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 ARL4AP40617 200 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 ZAP70P43403 619 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 ANXA11P50995 505 aaKnown RBP7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 TLE1Q04724 770 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 SRSF11Q05519 484 aaKnown RBP7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 KCNB1Q14721 858 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 EGFL6Q8IUX8 553 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 CCDC116Q8IYX3 515 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 NIPA2Q8N8Q9 360 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 OR2L3Q8NG85 312 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 FATE1Q969F0 183 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 PLEKHG4BQ96PX9 1271 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 RBCK1Q9BYM8 510 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 NUAK2Q9H093 628 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 MANSC1Q9H8J5 431 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 MTMR10Q9NXD2 777 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 ICKQ9UPZ9 632 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 EXOGQ9Y2C4 368 aaKnown RBP7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 HSPB11Q9Y547 144 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 MAP3K15Q6ZN16 1313 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 ATXN2Q99700 1313 aaKnown RBP7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 LARGE1O95461 756 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 THRBP10828 461 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 HK1P19367 917 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms