RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 TTC39CQ8N584 583 aa20.57■□□□□ 0.88
LIME1-201ENST00000309546 SLC4A11Q8NBS3 891 aa20.57■□□□□ 0.88
LIME1-201ENST00000309546 SPATA20Q8TB22 786 aa20.57■□□□□ 0.88
LIME1-201ENST00000309546 TMEM176AQ96HP8 235 aa20.57■□□□□ 0.88
LIME1-201ENST00000309546 KLF16Q9BXK1 252 aaPredicted RBP20.57■□□□□ 0.88
LIME1-201ENST00000309546 TPSD1Q9BZJ3 242 aa20.57■□□□□ 0.88
LIME1-201ENST00000309546 ARRDC1-AS1Q9H2J1 176 aa20.57■□□□□ 0.88
LIME1-201ENST00000309546 ZDHHC4Q9NPG8 344 aa20.57■□□□□ 0.88
LIME1-201ENST00000309546 ARMCX3Q9UH62 379 aaPredicted RBP20.57■□□□□ 0.88
LIME1-201ENST00000309546 LSM7Q9UK45 103 aaKnown RBP20.57■□□□□ 0.88
LIME1-201ENST00000309546 MMP17Q9ULZ9 603 aa20.57■□□□□ 0.88
LIME1-201ENST00000309546 MED19A0JLT2 244 aaPredicted RBP20.56■□□□□ 0.88
LIME1-201ENST00000309546 PSMA7O14818 248 aa20.56■□□□□ 0.88
LIME1-201ENST00000309546 KLF8O95600 359 aaPredicted RBP20.56■□□□□ 0.88
LIME1-201ENST00000309546 ATXN1P54253 815 aaKnown RBP20.56■□□□□ 0.88
LIME1-201ENST00000309546 RAD23BP54727 409 aa20.56■□□□□ 0.88
LIME1-201ENST00000309546 MRPS21P82921 87 aaKnown RBP20.56■□□□□ 0.88
LIME1-201ENST00000309546 C10orf120Q5SQS8 335 aa20.56■□□□□ 0.88
LIME1-201ENST00000309546 ALLCQ8N6M5 410 aa20.56■□□□□ 0.88
LIME1-201ENST00000309546 FAXDC2Q96IV6 333 aa20.56■□□□□ 0.88
LIME1-201ENST00000309546 GTPBP4Q9BZE4 634 aaKnown RBP20.56■□□□□ 0.88
LIME1-201ENST00000309546 SPHK2Q9NRA0 654 aa20.56■□□□□ 0.88
LIME1-201ENST00000309546 MTPAPQ9NVV4 582 aaKnown RBP eCLIP20.56■□□□□ 0.882e-6■■□□□ 11.6
LIME1-201ENST00000309546 EBF1Q9UH73 591 aa20.56■□□□□ 0.88
LIME1-201ENST00000309546 MAN1B1Q9UKM7 699 aa20.56■□□□□ 0.88
LIME1-201ENST00000309546 INVSQ9Y283 1065 aa20.56■□□□□ 0.88
LIME1-201ENST00000309546 DCLK1O15075 740 aa20.55■□□□□ 0.88
LIME1-201ENST00000309546 HOXC11O43248 304 aaPredicted RBP20.55■□□□□ 0.88
LIME1-201ENST00000309546 TULP3O75386 442 aa20.55■□□□□ 0.88
LIME1-201ENST00000309546 EPN2O95208 641 aa20.55■□□□□ 0.88
LIME1-201ENST00000309546 GBP1P32455 592 aa20.55■□□□□ 0.88
LIME1-201ENST00000309546 GRIA2P42262 883 aa20.55■□□□□ 0.88
LIME1-201ENST00000309546 LRMPQ12912 555 aa20.55■□□□□ 0.88
LIME1-201ENST00000309546 EMC10Q5UCC4 262 aa20.55■□□□□ 0.88
LIME1-201ENST00000309546 KLHL10Q6JEL2 608 aa20.55■□□□□ 0.88
LIME1-201ENST00000309546 CCDC186Q7Z3E2 898 aa20.55■□□□□ 0.88
LIME1-201ENST00000309546 TMEM25Q86YD3 366 aa20.55■□□□□ 0.88
LIME1-201ENST00000309546 TXNDC5Q8NBS9 432 aaKnown RBP20.55■□□□□ 0.88
LIME1-201ENST00000309546 LOXL4Q96JB6 756 aa20.55■□□□□ 0.88
LIME1-201ENST00000309546 DEC1Q9P2X7 70 aa20.55■□□□□ 0.88
LIME1-201ENST00000309546 DNAH14Q0VDD8 3507 aa20.54■□□□□ 0.88
LIME1-201ENST00000309546 TBC1D3BA6NDS4 549 aa20.54■□□□□ 0.88
LIME1-201ENST00000309546 NEDD8-MDP1E9PL57 170 aa20.54■□□□□ 0.88
LIME1-201ENST00000309546 RALAP11233 206 aa20.54■□□□□ 0.88
LIME1-201ENST00000309546 CUL2Q13617 745 aa20.54■□□□□ 0.88
LIME1-201ENST00000309546 ELF2Q15723 593 aa20.54■□□□□ 0.88
LIME1-201ENST00000309546 CRY1Q16526 586 aa20.54■□□□□ 0.88
LIME1-201ENST00000309546 GOLGA7BQ2TAP0 167 aa20.54■□□□□ 0.88
LIME1-201ENST00000309546 PLK5Q496M5 336 aa20.54■□□□□ 0.88
LIME1-201ENST00000309546 CCDC40Q4G0X9 1142 aa20.54■□□□□ 0.88
LIME1-201ENST00000309546 TPGS1Q6ZTW0 290 aa20.54■□□□□ 0.88
LIME1-201ENST00000309546 HTR3DQ70Z44 454 aa20.54■□□□□ 0.88
LIME1-201ENST00000309546 SCD5Q86SK9 330 aa20.54■□□□□ 0.88
LIME1-201ENST00000309546 TADA2BQ86TJ2 420 aa20.54■□□□□ 0.88
LIME1-201ENST00000309546 MIB1Q86YT6 1006 aa20.54■□□□□ 0.88
LIME1-201ENST00000309546 ETFBKMTQ8IXQ9 262 aa20.54■□□□□ 0.88
LIME1-201ENST00000309546 C12orf50Q8NA57 414 aaPredicted RBP20.54■□□□□ 0.88
LIME1-201ENST00000309546 IL17RCQ8NAC3 791 aa20.54■□□□□ 0.88
LIME1-201ENST00000309546 NETO1Q8TDF5 533 aa20.54■□□□□ 0.88
LIME1-201ENST00000309546 SLC35C1Q96A29 364 aa20.54■□□□□ 0.88
LIME1-201ENST00000309546 DUSP9Q99956 384 aaKnown RBP20.54■□□□□ 0.88
LIME1-201ENST00000309546 RTKNQ9BST9 563 aa20.54■□□□□ 0.88
LIME1-201ENST00000309546 DUSP15Q9H1R2 295 aaPredicted RBP20.54■□□□□ 0.88
LIME1-201ENST00000309546 DNMT3LQ9UJW3 386 aa20.54■□□□□ 0.88
LIME1-201ENST00000309546 COQ4Q9Y3A0 265 aa20.54■□□□□ 0.88
LIME1-201ENST00000309546 MYO18AQ92614 2054 aaKnown RBP20.54■□□□□ 0.88
LIME1-201ENST00000309546 DCDC2BA2VCK2 349 aa20.53■□□□□ 0.88
LIME1-201ENST00000309546 SGK1O00141 431 aa20.53■□□□□ 0.88
LIME1-201ENST00000309546 GDF9O60383 454 aa20.53■□□□□ 0.88
LIME1-201ENST00000309546 GREM1O60565 184 aa20.53■□□□□ 0.88
LIME1-201ENST00000309546 CD19P15391 556 aa20.53■□□□□ 0.88
LIME1-201ENST00000309546 CD44P16070 742 aaKnown RBP20.53■□□□□ 0.88
LIME1-201ENST00000309546 KIR2DL1P43626 348 aaPredicted RBP20.53■□□□□ 0.88
LIME1-201ENST00000309546 PSEN1P49768 467 aa20.53■□□□□ 0.88
LIME1-201ENST00000309546 SLC8A3P57103 927 aa20.53■□□□□ 0.88
LIME1-201ENST00000309546 SF3A2Q15428 464 aaKnown RBP20.53■□□□□ 0.88
LIME1-201ENST00000309546 AASDHQ4L235 1098 aaPredicted RBP20.53■□□□□ 0.88
LIME1-201ENST00000309546 C10orf76Q5T2E6 689 aa20.53■□□□□ 0.88
LIME1-201ENST00000309546 ARHGAP17Q68EM7 881 aa20.53■□□□□ 0.88
LIME1-201ENST00000309546 TMEM92Q6UXU6 159 aa20.53■□□□□ 0.88
LIME1-201ENST00000309546 PIGZQ86VD9 579 aa20.53■□□□□ 0.88
LIME1-201ENST00000309546 PHTF2Q8N3S3 785 aa20.53■□□□□ 0.88
LIME1-201ENST00000309546 MDGA1Q8NFP4 955 aa20.53■□□□□ 0.88
LIME1-201ENST00000309546 DHTKD1Q96HY7 919 aaPredicted RBP20.53■□□□□ 0.88
LIME1-201ENST00000309546 ZC3H10Q96K80 434 aaKnown RBP20.53■□□□□ 0.88
LIME1-201ENST00000309546 CNOT6LQ96LI5 555 aaKnown RBP20.53■□□□□ 0.88
LIME1-201ENST00000309546 BBS2Q9BXC9 721 aa20.53■□□□□ 0.88
LIME1-201ENST00000309546 DNAJC17Q9NVM6 304 aaKnown RBP20.53■□□□□ 0.88
LIME1-201ENST00000309546 RASAL2Q9UJF2 1139 aa20.53■□□□□ 0.88
LIME1-201ENST00000309546 CIZ1Q9ULV3 898 aaPredicted RBP20.53■□□□□ 0.88
LIME1-201ENST00000309546 USP3Q9Y6I4 520 aa20.53■□□□□ 0.88
LIME1-201ENST00000309546 THADAQ6YHU6 1953 aa20.52■□□□□ 0.88
LIME1-201ENST00000309546 TRIM24O15164 1050 aa20.52■□□□□ 0.88
LIME1-201ENST00000309546 ALDH1A2O94788 518 aa20.52■□□□□ 0.88
LIME1-201ENST00000309546 HNRNPLP14866 589 aaKnown RBP eCLIP20.52■□□□□ 0.88
LIME1-201ENST00000309546 TNFRSF4P43489 277 aa20.52■□□□□ 0.88
LIME1-201ENST00000309546 PLA2G4AP47712 749 aa20.52■□□□□ 0.88
LIME1-201ENST00000309546 YWHAEP62258 255 aaKnown RBP20.52■□□□□ 0.88
LIME1-201ENST00000309546 EFEMP1Q12805 493 aa20.52■□□□□ 0.88
LIME1-201ENST00000309546 HSF5Q4G112 596 aaPredicted RBP20.52■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms