RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 NDRG1Q92597 394 aaKnown RBP19.09■□□□□ 0.65
SHKBP1-201ENST00000291842 ZNF75CPQ92670 426 aaPredicted RBP19.09■□□□□ 0.65
SHKBP1-201ENST00000291842 GRAMD1AQ96CP6 724 aa19.09■□□□□ 0.65
SHKBP1-201ENST00000291842 CYTH2Q99418 400 aa19.09■□□□□ 0.65
SHKBP1-201ENST00000291842 DHX35Q9H5Z1 703 aaKnown RBP19.09■□□□□ 0.65
SHKBP1-201ENST00000291842 BAIAP2L1Q9UHR4 511 aa19.09■□□□□ 0.65
SHKBP1-201ENST00000291842 PIN4Q9Y237 131 aaKnown RBP19.09■□□□□ 0.65
SHKBP1-201ENST00000291842 STARD13Q9Y3M8 1113 aa19.09■□□□□ 0.65
SHKBP1-201ENST00000291842 DPYSL4O14531 572 aa19.08■□□□□ 0.65
SHKBP1-201ENST00000291842 CYP2F1P24903 491 aa19.08■□□□□ 0.65
SHKBP1-201ENST00000291842 GTF2A2P52657 109 aa19.08■□□□□ 0.65
SHKBP1-201ENST00000291842 SLC18A1P54219 525 aa19.08■□□□□ 0.65
SHKBP1-201ENST00000291842 ZNF200P98182 395 aaPredicted RBP19.08■□□□□ 0.65
SHKBP1-201ENST00000291842 GBE1Q04446 702 aa19.08■□□□□ 0.65
SHKBP1-201ENST00000291842 PTK7Q13308 1070 aa19.08■□□□□ 0.65
SHKBP1-201ENST00000291842 RNF43Q68DV7 783 aa19.08■□□□□ 0.65
SHKBP1-201ENST00000291842 TRIM56Q9BRZ2 755 aaKnown RBP19.08■□□□□ 0.65
SHKBP1-201ENST00000291842 EDF1O60869 148 aaKnown RBP19.08■□□□□ 0.64
SHKBP1-201ENST00000291842 GTF2A1P52655 376 aaPredicted RBP19.08■□□□□ 0.64
SHKBP1-201ENST00000291842 YWHAZP63104 245 aaKnown RBP19.08■□□□□ 0.64
SHKBP1-201ENST00000291842 FAAP100Q0VG06 881 aa19.08■□□□□ 0.64
SHKBP1-201ENST00000291842 SLC9A4Q6AI14 798 aa19.08■□□□□ 0.64
SHKBP1-201ENST00000291842 GBP7Q8N8V2 638 aaPredicted RBP19.08■□□□□ 0.64
SHKBP1-201ENST00000291842 NETO2Q8NC67 525 aa19.08■□□□□ 0.64
SHKBP1-201ENST00000291842 KBTBD7Q8WVZ9 684 aa19.08■□□□□ 0.64
SHKBP1-201ENST00000291842 KLHL29Q96CT2 875 aa19.08■□□□□ 0.64
SHKBP1-201ENST00000291842 SERAC1Q96JX3 654 aa19.08■□□□□ 0.64
SHKBP1-201ENST00000291842 PLCD4Q9BRC7 762 aa19.08■□□□□ 0.64
SHKBP1-201ENST00000291842 ETNK1Q9HBU6 452 aa19.08■□□□□ 0.64
SHKBP1-201ENST00000291842 PAK5Q9P286 719 aa19.08■□□□□ 0.64
SHKBP1-201ENST00000291842 MORF4L1Q9UBU8 362 aa19.08■□□□□ 0.64
SHKBP1-201ENST00000291842 F5H423 210 aaPredicted RBP19.07■□□□□ 0.64
SHKBP1-201ENST00000291842 HOXD8P13378 290 aaPredicted RBP19.07■□□□□ 0.64
SHKBP1-201ENST00000291842 NQO1P15559 274 aaKnown RBP19.07■□□□□ 0.64
SHKBP1-201ENST00000291842 GNL1P36915 607 aaPredicted RBP19.07■□□□□ 0.64
SHKBP1-201ENST00000291842 SLC10A2Q12908 348 aaPredicted RBP19.07■□□□□ 0.64
SHKBP1-201ENST00000291842 FBXO47Q5MNV8 452 aa19.07■□□□□ 0.64
SHKBP1-201ENST00000291842 BANPQ8N9N5 519 aa19.07■□□□□ 0.64
SHKBP1-201ENST00000291842 TEKT4Q8WW24 435 aa19.07■□□□□ 0.64
SHKBP1-201ENST00000291842 MYLK2Q9H1R3 596 aa19.07■□□□□ 0.64
SHKBP1-201ENST00000291842 NRDE2Q9H7Z3 1164 aa19.07■□□□□ 0.64
SHKBP1-201ENST00000291842 FETUBQ9UGM5 382 aa19.07■□□□□ 0.64
SHKBP1-201ENST00000291842 DERAQ9Y315 318 aa19.07■□□□□ 0.64
SHKBP1-201ENST00000291842 MFHAS1Q9Y4C4 1052 aa19.07■□□□□ 0.64
SHKBP1-201ENST00000291842 IKBKGQ9Y6K9 419 aa19.07■□□□□ 0.64
SHKBP1-201ENST00000291842 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP19.07■□□□□ 0.64
SHKBP1-201ENST00000291842 SMAPO00193 183 aa19.07■□□□□ 0.64
SHKBP1-201ENST00000291842 CHADO15335 359 aa19.07■□□□□ 0.64
SHKBP1-201ENST00000291842 ZWINTO95229 277 aa19.07■□□□□ 0.64
SHKBP1-201ENST00000291842 MT-ND3P03897 115 aa19.07■□□□□ 0.64
SHKBP1-201ENST00000291842 DARSP14868 501 aaKnown RBP19.07■□□□□ 0.64
SHKBP1-201ENST00000291842 TGM2P21980 687 aa19.07■□□□□ 0.64
SHKBP1-201ENST00000291842 L1CAMP32004 1257 aa19.07■□□□□ 0.64
SHKBP1-201ENST00000291842 IQSEC1Q6DN90 963 aa19.07■□□□□ 0.64
SHKBP1-201ENST00000291842 ALKAL1Q6UXT8 129 aa19.07■□□□□ 0.64
SHKBP1-201ENST00000291842 OTOAQ7RTW8 1153 aa19.07■□□□□ 0.64
SHKBP1-201ENST00000291842 PLEKHH3Q7Z736 793 aa19.07■□□□□ 0.64
SHKBP1-201ENST00000291842 CEP57Q86XR8 500 aa19.07■□□□□ 0.64
SHKBP1-201ENST00000291842 CTAGE3PQ8IX95 158 aa19.07■□□□□ 0.64
SHKBP1-201ENST00000291842 PYROXD2Q8N2H3 581 aa19.07■□□□□ 0.64
SHKBP1-201ENST00000291842 CCDC185Q8N715 623 aa19.07■□□□□ 0.64
SHKBP1-201ENST00000291842 LRRC52Q8N7C0 313 aa19.07■□□□□ 0.64
SHKBP1-201ENST00000291842 SLC2A14Q8TDB8 520 aa19.07■□□□□ 0.64
SHKBP1-201ENST00000291842 ETNK2Q9NVF9 386 aa19.07■□□□□ 0.64
SHKBP1-201ENST00000291842 STK38LQ9Y2H1 464 aa19.07■□□□□ 0.64
SHKBP1-201ENST00000291842 SMIM28A0A1B0GU29 152 aa19.06■□□□□ 0.64
SHKBP1-201ENST00000291842 RRN3P2A6NIE6 340 aa19.06■□□□□ 0.64
SHKBP1-201ENST00000291842 CHUKO15111 745 aa19.06■□□□□ 0.64
SHKBP1-201ENST00000291842 ATP6V1G2O95670 118 aa19.06■□□□□ 0.64
SHKBP1-201ENST00000291842 INHBAP08476 426 aa19.06■□□□□ 0.64
SHKBP1-201ENST00000291842 OVGP1Q12889 678 aa19.06■□□□□ 0.64
SHKBP1-201ENST00000291842 CAND1Q86VP6 1230 aaKnown RBP19.06■□□□□ 0.64
SHKBP1-201ENST00000291842 ERP27Q96DN0 273 aa19.06■□□□□ 0.64
SHKBP1-201ENST00000291842 PTPN18Q99952 460 aa19.06■□□□□ 0.64
SHKBP1-201ENST00000291842 CNTN3Q9P232 1028 aa19.06■□□□□ 0.64
SHKBP1-201ENST00000291842 A6NJR5 290 aa19.06■□□□□ 0.64
SHKBP1-201ENST00000291842 KPNA7A9QM74 516 aa19.06■□□□□ 0.64
SHKBP1-201ENST00000291842 KRT16P08779 473 aa19.06■□□□□ 0.64
SHKBP1-201ENST00000291842 SETSIPP0DME0 302 aa19.06■□□□□ 0.64
SHKBP1-201ENST00000291842 SOX4Q06945 474 aaPredicted RBP19.06■□□□□ 0.64
SHKBP1-201ENST00000291842 RGS9BPQ6ZS82 235 aa19.06■□□□□ 0.64
SHKBP1-201ENST00000291842 TBC1D31Q96DN5 1066 aa19.06■□□□□ 0.64
SHKBP1-201ENST00000291842 TBCBQ99426 244 aa19.06■□□□□ 0.64
SHKBP1-201ENST00000291842 FAM124BQ9H5Z6 455 aaPredicted RBP19.06■□□□□ 0.64
SHKBP1-201ENST00000291842 NPHS2Q9NP85 383 aa19.06■□□□□ 0.64
SHKBP1-201ENST00000291842 SLC5A4Q9NY91 659 aa19.06■□□□□ 0.64
SHKBP1-201ENST00000291842 AP4E1Q9UPM8 1137 aa19.06■□□□□ 0.64
SHKBP1-201ENST00000291842 CHKBQ9Y259 395 aa19.06■□□□□ 0.64
SHKBP1-201ENST00000291842 CFAP73A6NFT4 308 aa19.05■□□□□ 0.64
SHKBP1-201ENST00000291842 A8MUI8 341 aa19.05■□□□□ 0.64
SHKBP1-201ENST00000291842 CXorf49A8MYA2 514 aaPredicted RBP19.05■□□□□ 0.64
SHKBP1-201ENST00000291842 MDM4O15151 490 aa19.05■□□□□ 0.64
SHKBP1-201ENST00000291842 METTL18O95568 372 aa19.05■□□□□ 0.64
SHKBP1-201ENST00000291842 PYGBP11216 843 aa19.05■□□□□ 0.64
SHKBP1-201ENST00000291842 BST2Q10589 180 aaKnown RBP19.05■□□□□ 0.64
SHKBP1-201ENST00000291842 E2F5Q15329 346 aa19.05■□□□□ 0.64
SHKBP1-201ENST00000291842 APBB1IPQ7Z5R6 666 aaPredicted RBP19.05■□□□□ 0.64
SHKBP1-201ENST00000291842 UNC93AQ86WB7 457 aa19.05■□□□□ 0.64
SHKBP1-201ENST00000291842 PPM1NQ8N819 430 aa19.05■□□□□ 0.64
SHKBP1-201ENST00000291842 ANKRD52Q8NB46 1076 aa19.05■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms