RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 POLNQ7Z5Q5 900 aa17.29■□□□□ 0.36
VPS54-201ENST00000272322 CCDC185Q8N715 623 aa17.29■□□□□ 0.36
VPS54-201ENST00000272322 RNF169Q8NCN4 708 aa17.29■□□□□ 0.36
VPS54-201ENST00000272322 DNAJB3Q8WWF6 145 aa17.29■□□□□ 0.36
VPS54-201ENST00000272322 SHCBP1LQ9BZQ2 653 aa17.29■□□□□ 0.36
VPS54-201ENST00000272322 PRKAG3Q9UGI9 489 aa17.29■□□□□ 0.36
VPS54-201ENST00000272322 TTLL3Q9Y4R7 772 aa17.29■□□□□ 0.36
VPS54-201ENST00000272322 SKAP2O75563 359 aaPredicted RBP17.29■□□□□ 0.36
VPS54-201ENST00000272322 SERPINB3P29508 390 aa17.29■□□□□ 0.36
VPS54-201ENST00000272322 NDUFV1P49821 464 aa17.29■□□□□ 0.36
VPS54-201ENST00000272322 SLC10A2Q12908 348 aaPredicted RBP17.29■□□□□ 0.36
VPS54-201ENST00000272322 SOWAHAQ2M3V2 549 aa17.29■□□□□ 0.36
VPS54-201ENST00000272322 EFHC2Q5JST6 749 aa17.29■□□□□ 0.36
VPS54-201ENST00000272322 CCDC91Q7Z6B0 441 aa17.29■□□□□ 0.36
VPS54-201ENST00000272322 LONP2Q86WA8 852 aa17.29■□□□□ 0.36
VPS54-201ENST00000272322 PQLC3Q8N755 202 aa17.29■□□□□ 0.36
VPS54-201ENST00000272322 SLC2A14Q8TDB8 520 aa17.29■□□□□ 0.36
VPS54-201ENST00000272322 DEPDC1BQ8WUY9 529 aa17.29■□□□□ 0.36
VPS54-201ENST00000272322 DCAKDQ8WVC6 231 aa17.29■□□□□ 0.36
VPS54-201ENST00000272322 MCRS1Q96EZ8 462 aa17.29■□□□□ 0.36
VPS54-201ENST00000272322 ACSS3Q9H6R3 686 aa17.29■□□□□ 0.36
VPS54-201ENST00000272322 SPDYE5A6NIY4 337 aa17.28■□□□□ 0.36
VPS54-201ENST00000272322 A6NJR5 290 aa17.28■□□□□ 0.36
VPS54-201ENST00000272322 PDHXO00330 501 aa17.28■□□□□ 0.36
VPS54-201ENST00000272322 ADCY6O43306 1168 aa17.28■□□□□ 0.36
VPS54-201ENST00000272322 ABHD2P08910 425 aa17.28■□□□□ 0.36
VPS54-201ENST00000272322 GOT1P17174 413 aa17.28■□□□□ 0.36
VPS54-201ENST00000272322 CYP2F1P24903 491 aa17.28■□□□□ 0.36
VPS54-201ENST00000272322 DCAF6Q58WW2 860 aa17.28■□□□□ 0.36
VPS54-201ENST00000272322 TAPT1Q6NXT6 567 aa17.28■□□□□ 0.36
VPS54-201ENST00000272322 DRICH1Q6PGQ1 229 aaPredicted RBP17.28■□□□□ 0.36
VPS54-201ENST00000272322 NIPA2Q8N8Q9 360 aa17.28■□□□□ 0.36
VPS54-201ENST00000272322 UTP4Q969X6 686 aaKnown RBP17.28■□□□□ 0.36
VPS54-201ENST00000272322 PCDH18Q9HCL0 1135 aa17.28■□□□□ 0.36
VPS54-201ENST00000272322 KCNK1O00180 336 aa17.28■□□□□ 0.36
VPS54-201ENST00000272322 RECQL4O94761 1208 aa17.28■□□□□ 0.36
VPS54-201ENST00000272322 HDAC4P56524 1084 aa17.28■□□□□ 0.36
VPS54-201ENST00000272322 BEX3Q00994 111 aa17.28■□□□□ 0.36
VPS54-201ENST00000272322 KCNT2Q6UVM3 1135 aa17.28■□□□□ 0.36
VPS54-201ENST00000272322 CYP4V2Q6ZWL3 525 aaPredicted RBP17.28■□□□□ 0.36
VPS54-201ENST00000272322 MAP7D3Q8IWC1 876 aa17.28■□□□□ 0.36
VPS54-201ENST00000272322 OR6J1Q8NGC5 347 aa17.28■□□□□ 0.36
VPS54-201ENST00000272322 TTC8Q8TAM2 541 aa17.28■□□□□ 0.36
VPS54-201ENST00000272322 WDR35Q9P2L0 1181 aa17.28■□□□□ 0.36
VPS54-201ENST00000272322 USH1CQ9Y6N9 552 aa17.28■□□□□ 0.36
VPS54-201ENST00000272322 RARBP10826 455 aa17.27■□□□□ 0.36
VPS54-201ENST00000272322 SMPD1P17405 629 aa17.27■□□□□ 0.36
VPS54-201ENST00000272322 AP1B1Q10567 949 aa17.27■□□□□ 0.36
VPS54-201ENST00000272322 EML3Q32P44 896 aa17.27■□□□□ 0.36
VPS54-201ENST00000272322 GALNTL6Q49A17 601 aa17.27■□□□□ 0.36
VPS54-201ENST00000272322 PCGF5Q86SE9 256 aa17.27■□□□□ 0.36
VPS54-201ENST00000272322 SPNS2Q8IVW8 549 aa17.27■□□□□ 0.36
VPS54-201ENST00000272322 GPRC5AQ8NFJ5 357 aa17.27■□□□□ 0.36
VPS54-201ENST00000272322 AGR3Q8TD06 166 aa17.27■□□□□ 0.36
VPS54-201ENST00000272322 ZFP42Q96MM3 310 aa17.27■□□□□ 0.36
VPS54-201ENST00000272322 APOL2Q9BQE5 337 aa17.27■□□□□ 0.36
VPS54-201ENST00000272322 TSSK1BQ9BXA7 367 aa17.27■□□□□ 0.36
VPS54-201ENST00000272322 NKX1-2Q9UD57 310 aaPredicted RBP17.27■□□□□ 0.36
VPS54-201ENST00000272322 COPEO14579 308 aa17.27■□□□□ 0.36
VPS54-201ENST00000272322 UNC5CO95185 931 aa17.27■□□□□ 0.36
VPS54-201ENST00000272322 MCF2P10911 925 aa17.27■□□□□ 0.36
VPS54-201ENST00000272322 NOMO1Q15155 1222 aa17.27■□□□□ 0.36
VPS54-201ENST00000272322 FYB2Q5VWT5 728 aa17.27■□□□□ 0.36
VPS54-201ENST00000272322 CXorf38Q8TB03 319 aa17.27■□□□□ 0.36
VPS54-201ENST00000272322 USP6NLQ92738 828 aa17.27■□□□□ 0.36
VPS54-201ENST00000272322 C16orf70Q9BSU1 422 aa17.27■□□□□ 0.36
VPS54-201ENST00000272322 SMYD2Q9NRG4 433 aa17.27■□□□□ 0.36
VPS54-201ENST00000272322 SMG5Q9UPR3 1016 aaKnown RBP17.27■□□□□ 0.36
VPS54-201ENST00000272322 DOCK1Q14185 1865 aa17.27■□□□□ 0.36
VPS54-201ENST00000272322 DNAJC25-GNG10A0A024R161 153 aa17.27■□□□□ 0.35
VPS54-201ENST00000272322 SPTLC1O15269 473 aa17.27■□□□□ 0.35
VPS54-201ENST00000272322 SAT1P21673 171 aa17.27■□□□□ 0.35
VPS54-201ENST00000272322 CLNS1AP54105 237 aaKnown RBP17.27■□□□□ 0.35
VPS54-201ENST00000272322 LAMC2Q13753 1193 aa17.27■□□□□ 0.35
VPS54-201ENST00000272322 DTX3LQ8TDB6 740 aa17.27■□□□□ 0.35
VPS54-201ENST00000272322 USP29Q9HBJ7 922 aa17.27■□□□□ 0.35
VPS54-201ENST00000272322 ARID2Q68CP9 1835 aa17.27■□□□□ 0.35
VPS54-201ENST00000272322 MEIS3P2A8K0S8 358 aa17.26■□□□□ 0.35
VPS54-201ENST00000272322 TMPRSS15P98073 1019 aa17.26■□□□□ 0.35
VPS54-201ENST00000272322 TFDP2Q14188 446 aa17.26■□□□□ 0.35
VPS54-201ENST00000272322 NBPF20Q3BBV1 942 aa17.26■□□□□ 0.35
VPS54-201ENST00000272322 TBC1D10AQ9BXI6 508 aa17.26■□□□□ 0.35
VPS54-201ENST00000272322 ZMYND8Q9ULU4 1186 aaPredicted RBP17.26■□□□□ 0.35
VPS54-201ENST00000272322 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP17.26■□□□□ 0.35
VPS54-201ENST00000272322 GOLGA8TH3BQL2 631 aa17.26■□□□□ 0.35
VPS54-201ENST00000272322 YWHAZP63104 245 aaKnown RBP17.26■□□□□ 0.35
VPS54-201ENST00000272322 TNFAIP2Q03169 654 aa17.26■□□□□ 0.35
VPS54-201ENST00000272322 KLHL38Q2WGJ6 581 aa17.26■□□□□ 0.35
VPS54-201ENST00000272322 PPP1R2P3Q6NXS1 205 aa17.26■□□□□ 0.35
VPS54-201ENST00000272322 ALYREFQ86V81 257 aaKnown RBP17.26■□□□□ 0.35
VPS54-201ENST00000272322 PDCD7Q8N8D1 485 aaKnown RBP17.26■□□□□ 0.35
VPS54-201ENST00000272322 TMEM40Q8WWA1 233 aa17.26■□□□□ 0.35
VPS54-201ENST00000272322 PPP2R3BQ9Y5P8 575 aa17.26■□□□□ 0.35
VPS54-201ENST00000272322 ASB14A6NK59 587 aa17.26■□□□□ 0.35
VPS54-201ENST00000272322 GAS2O43903 313 aaKnown RBP17.26■□□□□ 0.35
VPS54-201ENST00000272322 GSTA1P08263 222 aa17.26■□□□□ 0.35
VPS54-201ENST00000272322 RFWD3Q6PCD5 774 aa17.26■□□□□ 0.35
VPS54-201ENST00000272322 ADGRD1Q6QNK2 874 aa17.26■□□□□ 0.35
VPS54-201ENST00000272322 ARID3BQ8IVW6 561 aaPredicted RBP17.26■□□□□ 0.35
VPS54-201ENST00000272322 MOCOSQ96EN8 888 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms