RNA–Protein interactions for RNA: ENST00000249499.7

HOXD9-201, Transcript of homeobox D9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD9, Length 1,870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9-201ENST00000249499 GGA2Q9UJY4 613 aa23.83■■□□□ 1.4
HOXD9-201ENST00000249499 CHN1P15882 459 aa23.82■■□□□ 1.4
HOXD9-201ENST00000249499 NR2C2P49116 596 aa23.82■■□□□ 1.4
HOXD9-201ENST00000249499 MRPS5P82675 430 aaKnown RBP23.82■■□□□ 1.4
HOXD9-201ENST00000249499 PTK7Q13308 1070 aa23.82■■□□□ 1.4
HOXD9-201ENST00000249499 XRCC4Q13426 336 aa23.82■■□□□ 1.4
HOXD9-201ENST00000249499 DSC3Q14574 896 aa23.82■■□□□ 1.4
HOXD9-201ENST00000249499 FAM26DQ5JW98 314 aa23.82■■□□□ 1.4
HOXD9-201ENST00000249499 PAQR9Q6ZVX9 377 aa23.82■■□□□ 1.4
HOXD9-201ENST00000249499 PCDH19Q8TAB3 1148 aa23.82■■□□□ 1.4
HOXD9-201ENST00000249499 ZNF473Q8WTR7 871 aaKnown RBP23.82■■□□□ 1.4
HOXD9-201ENST00000249499 SELENOSQ9BQE4 189 aa23.82■■□□□ 1.4
HOXD9-201ENST00000249499 FRMD8Q9BZ67 464 aaPredicted RBP23.82■■□□□ 1.4
HOXD9-201ENST00000249499 DDX43Q9NXZ2 648 aaKnown RBP23.82■■□□□ 1.4
HOXD9-201ENST00000249499 PAK5Q9P286 719 aa23.82■■□□□ 1.4
HOXD9-201ENST00000249499 CDH9Q9ULB4 789 aa23.82■■□□□ 1.4
HOXD9-201ENST00000249499 PADI3Q9ULW8 664 aa23.82■■□□□ 1.4
HOXD9-201ENST00000249499 PTCH2Q9Y6C5 1203 aa23.82■■□□□ 1.4
HOXD9-201ENST00000249499 MEIS3P2A8K0S8 358 aa23.81■■□□□ 1.4
HOXD9-201ENST00000249499 FAM200BP0CF97 657 aa23.81■■□□□ 1.4
HOXD9-201ENST00000249499 L1CAMP32004 1257 aa23.81■■□□□ 1.4
HOXD9-201ENST00000249499 THPOP40225 353 aa23.81■■□□□ 1.4
HOXD9-201ENST00000249499 ADCY1Q08828 1119 aa23.81■■□□□ 1.4
HOXD9-201ENST00000249499 TRIM32Q13049 653 aa23.81■■□□□ 1.4
HOXD9-201ENST00000249499 PPP1R21Q6ZMI0 780 aa23.81■■□□□ 1.4
HOXD9-201ENST00000249499 BNIPLQ7Z465 357 aa23.81■■□□□ 1.4
HOXD9-201ENST00000249499 NT5C3BQ969T7 300 aa23.81■■□□□ 1.4
HOXD9-201ENST00000249499 AGO3Q9H9G7 860 aaKnown RBP23.81■■□□□ 1.4
HOXD9-201ENST00000249499 LRRC4Q9HBW1 653 aa23.81■■□□□ 1.4
HOXD9-201ENST00000249499 PPANQ9NQ55 473 aaKnown RBP23.81■■□□□ 1.4
HOXD9-201ENST00000249499 RNF186Q9NXI6 227 aa23.81■■□□□ 1.4
HOXD9-201ENST00000249499 TRPA1O75762 1119 aa23.81■■□□□ 1.4
HOXD9-201ENST00000249499 NOS2P35228 1153 aa23.81■■□□□ 1.4
HOXD9-201ENST00000249499 ADIGQ0VDE8 80 aa23.81■■□□□ 1.4
HOXD9-201ENST00000249499 CLEC20AQ6ZU45 233 aa23.81■■□□□ 1.4
HOXD9-201ENST00000249499 PGBD4Q96DM1 585 aa23.81■■□□□ 1.4
HOXD9-201ENST00000249499 SYT15Q9BQS2 421 aa23.81■■□□□ 1.4
HOXD9-201ENST00000249499 NRDE2Q9H7Z3 1164 aa23.81■■□□□ 1.4
HOXD9-201ENST00000249499 GPATCH2LQ9NWQ4 482 aa23.81■■□□□ 1.4
HOXD9-201ENST00000249499 STAP1Q9ULZ2 295 aa23.81■■□□□ 1.4
HOXD9-201ENST00000249499 AP4E1Q9UPM8 1137 aa23.81■■□□□ 1.4
HOXD9-201ENST00000249499 ATXN2Q99700 1313 aaKnown RBP23.8■■□□□ 1.4
HOXD9-201ENST00000249499 A0A0U1RQF3 1178 aa23.8■■□□□ 1.4
HOXD9-201ENST00000249499 H7C0C1 242 aa23.8■■□□□ 1.4
HOXD9-201ENST00000249499 ATP2C2O75185 946 aa23.8■■□□□ 1.4
HOXD9-201ENST00000249499 PRKAR2AP13861 404 aaKnown RBP23.8■■□□□ 1.4
HOXD9-201ENST00000249499 PCSK1P29120 753 aa23.8■■□□□ 1.4
HOXD9-201ENST00000249499 ATP5OP48047 213 aa23.8■■□□□ 1.4
HOXD9-201ENST00000249499 CLCNKBP51801 687 aa23.8■■□□□ 1.4
HOXD9-201ENST00000249499 YWHAZP63104 245 aaKnown RBP23.8■■□□□ 1.4
HOXD9-201ENST00000249499 PDIA2Q13087 525 aaKnown RBP23.8■■□□□ 1.4
HOXD9-201ENST00000249499 CA9Q16790 459 aa23.8■■□□□ 1.4
HOXD9-201ENST00000249499 NPNTQ6UXI9 565 aa23.8■■□□□ 1.4
HOXD9-201ENST00000249499 DSTYKQ6XUX3 929 aa23.8■■□□□ 1.4
HOXD9-201ENST00000249499 ZBED8Q8IZ13 594 aa23.8■■□□□ 1.4
HOXD9-201ENST00000249499 ATXN2LQ8WWM7 1075 aaKnown RBP23.8■■□□□ 1.4
HOXD9-201ENST00000249499 USP29Q9HBJ7 922 aa23.8■■□□□ 1.4
HOXD9-201ENST00000249499 INTS9Q9NV88 658 aaKnown RBP23.8■■□□□ 1.4
HOXD9-201ENST00000249499 MIOSQ9NXC5 875 aa23.8■■□□□ 1.4
HOXD9-201ENST00000249499 ZMYND8Q9ULU4 1186 aaPredicted RBP23.8■■□□□ 1.4
HOXD9-201ENST00000249499 C5orf60A6NFR6 353 aa23.79■■□□□ 1.4
HOXD9-201ENST00000249499 CHADO15335 359 aa23.79■■□□□ 1.4
HOXD9-201ENST00000249499 CYP2F1P24903 491 aa23.79■■□□□ 1.4
HOXD9-201ENST00000249499 CCND3P30281 292 aaPredicted RBP23.79■■□□□ 1.4
HOXD9-201ENST00000249499 PHBP35232 272 aa23.79■■□□□ 1.4
HOXD9-201ENST00000249499 SEC24CP53992 1094 aa23.79■■□□□ 1.4
HOXD9-201ENST00000249499 UPP1Q16831 310 aa23.79■■□□□ 1.4
HOXD9-201ENST00000249499 MDH1BQ5I0G3 518 aa23.79■■□□□ 1.4
HOXD9-201ENST00000249499 ZC3H18Q86VM9 953 aaKnown RBP23.79■■□□□ 1.4
HOXD9-201ENST00000249499 CDKL3Q8IVW4 592 aaPredicted RBP23.79■■□□□ 1.4
HOXD9-201ENST00000249499 PDIK1LQ8N165 341 aa23.79■■□□□ 1.4
HOXD9-201ENST00000249499 ATP11CQ8NB49 1132 aa23.79■■□□□ 1.4
HOXD9-201ENST00000249499 MDM1Q8TC05 714 aa23.79■■□□□ 1.4
HOXD9-201ENST00000249499 SLC2A13Q96QE2 648 aa23.79■■□□□ 1.4
HOXD9-201ENST00000249499 CRTAC1Q9NQ79 661 aa23.79■■□□□ 1.4
HOXD9-201ENST00000249499 NAALADL1Q9UQQ1 740 aa23.79■■□□□ 1.4
HOXD9-201ENST00000249499 EXOC1LA0A1B0GW35 172 aa23.79■■□□□ 1.4
HOXD9-201ENST00000249499 TFE3P19532 575 aaPredicted RBP23.79■■□□□ 1.4
HOXD9-201ENST00000249499 CD52P31358 61 aa23.79■■□□□ 1.4
HOXD9-201ENST00000249499 SCNN1GP51170 649 aa23.79■■□□□ 1.4
HOXD9-201ENST00000249499 SP3Q02447 781 aa23.79■■□□□ 1.4
HOXD9-201ENST00000249499 RNASELQ05823 741 aaKnown RBP23.79■■□□□ 1.4
HOXD9-201ENST00000249499 C1orf228Q6PIY5 440 aa23.79■■□□□ 1.4
HOXD9-201ENST00000249499 MICALCLQ6ZW33 695 aa23.79■■□□□ 1.4
HOXD9-201ENST00000249499 TADA2BQ86TJ2 420 aa23.79■■□□□ 1.4
HOXD9-201ENST00000249499 DEFB106AQ8N104 65 aa23.79■■□□□ 1.4
HOXD9-201ENST00000249499 SIX6OS1Q8N1H7 587 aa23.79■■□□□ 1.4
HOXD9-201ENST00000249499 LPPQ93052 612 aa23.79■■□□□ 1.4
HOXD9-201ENST00000249499 UROC1Q96N76 676 aa23.79■■□□□ 1.4
HOXD9-201ENST00000249499 MED10Q9BTT4 135 aa23.79■■□□□ 1.4
HOXD9-201ENST00000249499 DHX35Q9H5Z1 703 aaKnown RBP23.79■■□□□ 1.4
HOXD9-201ENST00000249499 C10orf88Q9H8K7 445 aa23.79■■□□□ 1.4
HOXD9-201ENST00000249499 MTMR10Q9NXD2 777 aa23.79■■□□□ 1.4
HOXD9-201ENST00000249499 SLC24A2Q9UI40 661 aa23.79■■□□□ 1.4
HOXD9-201ENST00000249499 ACAT1P24752 427 aaKnown RBP23.78■■□□□ 1.4
HOXD9-201ENST00000249499 AIF1P55008 147 aa23.78■■□□□ 1.4
HOXD9-201ENST00000249499 GRIK3Q13003 919 aa23.78■■□□□ 1.4
HOXD9-201ENST00000249499 KIAA0319Q5VV43 1072 aa23.78■■□□□ 1.4
HOXD9-201ENST00000249499 ANKRD22Q5VYY1 191 aa23.78■■□□□ 1.4
HOXD9-201ENST00000249499 NPY6RQ99463 290 aa23.78■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms