RNA–Protein interactions for RNA: YDR261C-D

YDR261C-D, Transcript of Retrotransposon TYA Gag and TYB Pol genes, yeast

Gene YDR261C-D, Length 4,815 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
YDR261C-D	YDR261C-D	SLH1	P53327	1967 aa	Known RBP	3.05	□□□□□ -1.92
YDR261C-D	YDR261C-D	GSC2	P40989	1895 aa		3.05	□□□□□ -1.92
YDR261C-D	YDR261C-D	YGL260W	P53056	76 aa		3.05	□□□□□ -1.92
YDR261C-D	YDR261C-D	PMD1	P32634	1753 aa		3.05	□□□□□ -1.92
YDR261C-D	YDR261C-D	YDL012C	Q12489	107 aa		3.04	□□□□□ -1.92
YDR261C-D	YDR261C-D	SEC16	P48415	2195 aa	Known RBP	3.03	□□□□□ -1.92
YDR261C-D	YDR261C-D	YHR212W-A	P0CX91	67 aa		3.01	□□□□□ -1.93
YDR261C-D	YDR261C-D	BEM2	P39960	2167 aa	Known RBP	3.01	□□□□□ -1.93
YDR261C-D	YDR261C-D	ACC1	Q00955	2233 aa	Known RBP	3.01	□□□□□ -1.93
YDR261C-D	YDR261C-D	ECM29	P38737	1868 aa		3	□□□□□ -1.93
YDR261C-D	YDR261C-D	RPL37B	P51402	88 aa	Known RBP	3	□□□□□ -1.93
YDR261C-D	YDR261C-D	Q0017	Q9ZZX8	53 aa		2.99	□□□□□ -1.93
YDR261C-D	YDR261C-D	SEN1	Q00416	2231 aa	Known RBP	2.98	□□□□□ -1.93
YDR261C-D	YDR261C-D	URA2	P07259	2214 aa	Known RBP	2.98	□□□□□ -1.93
YDR261C-D	YDR261C-D	YOL164W-A	Q3E7A5	60 aa		2.97	□□□□□ -1.93
YDR261C-D	YDR261C-D	YMR230W-A	Q3E7B5	62 aa		2.97	□□□□□ -1.93
YDR261C-D	YDR261C-D	RPL43A	P0CX25	92 aa	Known RBP	2.97	□□□□□ -1.93
YDR261C-D	YDR261C-D	RPL43B	P0CX26	92 aa		2.97	□□□□□ -1.93
YDR261C-D	YDR261C-D	FAB1	P34756	2278 aa		2.97	□□□□□ -1.93
YDR261C-D	YDR261C-D	RDS3	Q06835	107 aa	Predicted RBP	2.95	□□□□□ -1.94
YDR261C-D	YDR261C-D	YCR108C	Q3E819	63 aa		2.95	□□□□□ -1.94
YDR261C-D	YDR261C-D	CCH1	P50077	2039 aa		2.94	□□□□□ -1.94
YDR261C-D	YDR261C-D	YCL042W	P25572	119 aa		2.93	□□□□□ -1.94
YDR261C-D	YDR261C-D	HKR1	P41809	1802 aa		2.91	□□□□□ -1.94
YDR261C-D	YDR261C-D	FAS1	P07149	2051 aa	Known RBP	2.9	□□□□□ -1.95
YDR261C-D	YDR261C-D	YDR210W	Q03482	75 aa		2.89	□□□□□ -1.95
YDR261C-D	YDR261C-D	FIG2	P25653	1609 aa		2.89	□□□□□ -1.95
YDR261C-D	YDR261C-D	STT4	P37297	1900 aa		2.87	□□□□□ -1.95
YDR261C-D	YDR261C-D	HFA1	P32874	2273 aa		2.84	□□□□□ -1.95
YDR261C-D	YDR261C-D	YBR016W	P38216	128 aa		2.84	□□□□□ -1.96
YDR261C-D	YDR261C-D	RPL37A	P49166	88 aa	Known RBP	2.81	□□□□□ -1.96
YDR261C-D	YDR261C-D	GIS2	P53849	153 aa	Known RBP RIP-Chip data	2.79	□□□□□ -1.96	not detected
YDR261C-D	YDR261C-D	YHR050W-A	Q05451	56 aa		2.78	□□□□□ -1.96
YDR261C-D	YDR261C-D	YIL046W-A	Q3E7Z4	54 aa		2.77	□□□□□ -1.97
YDR261C-D	YDR261C-D	Q0297	Q9ZZV8	51 aa		2.74	□□□□□ -1.97
YDR261C-D	YDR261C-D	YLR157W-E	P0CF00	54 aa		2.71	□□□□□ -1.98
YDR261C-D	YDR261C-D	TAO3	P40468	2376 aa		2.68	□□□□□ -1.98
YDR261C-D	YDR261C-D	YLL066W-B	Q8TGJ7	56 aa		2.67	□□□□□ -1.98
YDR261C-D	YDR261C-D	MEC1	P38111	2368 aa		2.67	□□□□□ -1.98
YDR261C-D	YDR261C-D	RPS29B	P41058	56 aa	Known RBP	2.53	□□□□□ -2.01
YDR261C-D	YDR261C-D	YHR086W-A	Q3E746	53 aa		2.52	□□□□□ -2.01
YDR261C-D	YDR261C-D	RPS29A	P41057	56 aa	Known RBP	2.47	□□□□□ -2.01
YDR261C-D	YDR261C-D	TOR1	P35169	2470 aa		2.4	□□□□□ -2.03
YDR261C-D	YDR261C-D	CUP1-1	P0CX80	61 aa		2.35	□□□□□ -2.03
YDR261C-D	YDR261C-D	CUP1-2	P0CX81	61 aa		2.35	□□□□□ -2.03
YDR261C-D	YDR261C-D	PRP8	P33334	2413 aa	Known RBP	2.34	□□□□□ -2.03
YDR261C-D	YDR261C-D	TOR2	P32600	2474 aa	Known RBP	2.29	□□□□□ -2.04
YDR261C-D	YDR261C-D	UTP20	P35194	2493 aa	Known RBP	2.25	□□□□□ -2.05
YDR261C-D	YDR261C-D	YPR117W	Q06116	2489 aa		2.23	□□□□□ -2.05
YDR261C-D	YDR261C-D	YDR034W-B	Q6Q5X2	51 aa		2.1	□□□□□ -2.07
YDR261C-D	YDR261C-D	FMP27	Q06179	2628 aa		1.83	□□□□□ -2.12
YDR261C-D	YDR261C-D	GCN1	P33892	2672 aa	Known RBP	1.7	□□□□□ -2.14
YDR261C-D	YDR261C-D	YBR056W-A	I2HB52	66 aa		1.66	□□□□□ -2.14
YDR261C-D	YDR261C-D	NUM1	Q00402	2748 aa		1.54	□□□□□ -2.16
YDR261C-D	YDR261C-D	TEL1	P38110	2787 aa		1.33	□□□□□ -2.2
YDR261C-D	YDR261C-D	DYN1	P36022	4092 aa		1.28	□□□□□ -2.2
YDR261C-D	YDR261C-D	MDN1	Q12019	4910 aa	Known RBP	1.13	□□□□□ -2.23
YDR261C-D	YDR261C-D	IRA1	P18963	3092 aa		1.09	□□□□□ -2.23
YDR261C-D	YDR261C-D	CSF1	Q12150	2958 aa		1.02	□□□□□ -2.25
YDR261C-D	YDR261C-D	TOM1	Q03280	3268 aa		0.95	□□□□□ -2.26
YDR261C-D	YDR261C-D	IRA2	P19158	3079 aa		0.94	□□□□□ -2.26
YDR261C-D	YDR261C-D	TRA1	P38811	3744 aa		0.94	□□□□□ -2.26
YDR261C-D	YDR261C-D	VPS13	Q07878	3144 aa		0.85	□□□□□ -2.27

Retrieved 63 of 5,963 RNA–protein pairs in 61.2 ms