RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 TRIM64CA6NLI5 447 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 SULT1B1O43704 296 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 PEPDP12955 493 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 C3orf62Q6ZUJ4 267 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 IQCF2Q8IXL9 164 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 OR8H2Q8N162 312 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 STRBPQ96SI9 672 aaKnown RBP4.81□□□□□ -1.64
SCN1A-220ENST00000641603 SEC31BQ9NQW1 1179 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 SEPT9Q9UHD8 586 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-220ENST00000641603 BICRAQ9NZM4 1560 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 ERI2A8K979 691 aaKnown RBP4.81□□□□□ -1.64
SCN1A-220ENST00000641603 NOTOA8MTQ0 251 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 ITGA10O75578 1167 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 PRKAR1AP10644 381 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 VAMP7P51809 220 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 RAD51Q06609 339 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 BOLA3Q53S33 107 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 SNAP47Q5SQN1 464 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 PPP1R15BQ5SWA1 713 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 TMEM53Q6P2H8 277 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 KIAA0408Q6ZU52 694 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 PROCA1Q8NCQ7 364 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-220ENST00000641603 APPL2Q8NEU8 664 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 ZHX1-C8orf76Q96EF9 292 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 HINFPQ9BQA5 517 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 LACRTQ9GZZ8 138 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 UMPSP11172 480 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 DDR2Q16832 855 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 TBC1D21Q8IYX1 336 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 PLEKHA8Q96JA3 519 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 Q96MT0 163 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 FAM111AQ96PZ2 611 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 C1orf21Q9H246 121 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 CYLDQ9NQC7 956 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 AGPAT5Q9NUQ2 364 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP4.81□□□□□ -1.64
SCN1A-220ENST00000641603 SALL1Q9NSC2 1324 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 PREX2Q70Z35 1606 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 UBDO15205 165 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 NBNO60934 754 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 TIE1P35590 1138 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 DENND6AQ8IWF6 608 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 EID3Q8N140 333 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 LRRC20Q8TCA0 184 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 FAM167AQ96KS9 214 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 NEUROG2Q9H2A3 272 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 HIPK3Q9H422 1215 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 SMARCAD1Q9H4L7 1026 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 EHD3Q9NZN3 535 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 ILVBLA1L0T0 632 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 H7C1W4 665 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 SYNCRIPO60506 623 aaKnown RBP4.81□□□□□ -1.64
SCN1A-220ENST00000641603 TMCC2O75069 709 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 RECQL5O94762 991 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-220ENST00000641603 APOL3O95236 402 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 TRIM25Q14258 630 aaKnown RBP4.81□□□□□ -1.64
SCN1A-220ENST00000641603 ACCSLQ4AC99 568 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 SLC7A3Q8WY07 619 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 TAMM41Q96BW9 452 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 HTATIP2Q9BUP3 242 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 GOLPH3Q9H4A6 298 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 EPB41L4AQ9HCS5 686 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-220ENST00000641603 S100A14Q9HCY8 104 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 CCDC177Q9NQR7 707 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-220ENST00000641603 VAV3Q9UKW4 847 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 DRG1Q9Y295 367 aaKnown RBP4.81□□□□□ -1.64
SCN1A-220ENST00000641603 RNF17Q9BXT8 1623 aaKnown RBP4.81□□□□□ -1.64
SCN1A-220ENST00000641603 CCDC195A0A1B0GUA6 201 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 GALK1P51570 392 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 MVKQ03426 396 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 ZNF211Q13398 564 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-220ENST00000641603 KCTD21Q4G0X4 260 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 DPY19L2Q6NUT2 758 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 DNAJB7Q7Z6W7 309 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-220ENST00000641603 RASGEF1CQ8N431 466 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 C9orf72Q96LT7 481 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 NDUFAF1Q9Y375 327 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 SLC30A1Q9Y6M5 507 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 LMTK2Q8IWU2 1503 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 ECE2O60344 883 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 DFNA5O60443 496 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 YES1P07947 543 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 ACTR3P61158 418 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 ATP13A5Q4VNC0 1218 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 PPHLN1Q8NEY8 458 aaKnown RBP4.81□□□□□ -1.64
SCN1A-220ENST00000641603 TRIM54Q9BYV2 358 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 XPO7Q9UIA9 1087 aaKnown RBP4.81□□□□□ -1.64
SCN1A-220ENST00000641603 PCDHA1Q9Y5I3 950 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 EIF4E1BA6NMX2 242 aaKnown RBP4.81□□□□□ -1.64
SCN1A-220ENST00000641603 CLDN3O15551 220 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 RARAP10276 462 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 CDC25AP30304 524 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 SESN2P58004 480 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-220ENST00000641603 AGAP9Q5VTM2 703 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 SCYL2Q6P3W7 929 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 ACTRT2Q8TDY3 377 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 MYLPFQ96A32 169 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 REXO4Q9GZR2 422 aaKnown RBP4.81□□□□□ -1.64
SCN1A-220ENST00000641603 SERHL2Q9H4I8 314 aa4.81□□□□□ -1.64
SCN1A-220ENST00000641603 SERHLQ9NQF3 203 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms