RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 KCNB1Q14721 858 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 IQCB1Q15051 598 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 DHCR24Q15392 516 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 TCEA2Q15560 299 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 TKFCQ3LXA3 575 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 LONRF3Q496Y0 759 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 PRAMEF19Q5SWL8 479 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 SOGA3Q5TF21 947 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 DCAF12L1Q5VU92 463 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 C9orf57Q5W0N0 161 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 DENND2CQ68D51 928 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 RGS7BPQ6MZT1 257 aaPredicted RBP0.73□□□□□ -2.29
VPS35-212ENST00000640313 LAYNQ6UX15 382 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 LIN28BQ6ZN17 250 aaKnown RBP eCLIP0.73□□□□□ -2.29
VPS35-212ENST00000640313 PTCHD4Q6ZW05 846 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 MIGA2Q7L4E1 593 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 TRAPPC11Q7Z392 1133 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 RAB11FIP4Q86YS3 637 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 IZUMO1Q8IYV9 350 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 SPAG16Q8N0X2 631 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 ABRAQ8N0Z2 381 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 WDSUB1Q8N9V3 476 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 MAFAQ8NHW3 353 aaPredicted RBP0.73□□□□□ -2.29
VPS35-212ENST00000640313 OSCP1Q8WVF1 389 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 RAB24Q969Q5 203 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 HDAC10Q969S8 669 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 CTHRC1Q96CG8 243 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 TRMT61AQ96FX7 289 aaKnown RBP0.73□□□□□ -2.29
VPS35-212ENST00000640313 KAZALD1Q96I82 304 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 CLPTM1LQ96KA5 538 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 SLC46A1Q96NT5 459 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 DUX5Q96PT3 197 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 DNAJC2Q99543 621 aaKnown RBP0.73□□□□□ -2.29
VPS35-212ENST00000640313 PIMREGQ9BSJ6 248 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 TARS2Q9BW92 718 aaKnown RBP0.73□□□□□ -2.29
VPS35-212ENST00000640313 SCNM1Q9BWG6 230 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 DDX31Q9H8H2 851 aaKnown RBP0.73□□□□□ -2.29
VPS35-212ENST00000640313 SDF2L1Q9HCN8 221 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 TCF7L2Q9NQB0 619 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 CCM2LQ9NUG4 571 aaPredicted RBP0.73□□□□□ -2.29
VPS35-212ENST00000640313 SAP30BPQ9UHR5 308 aaKnown RBP0.73□□□□□ -2.29
VPS35-212ENST00000640313 ZDHHC8Q9ULC8 765 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 MYO6Q9UM54 1294 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 G3BP2Q9UN86 482 aaKnown RBP0.73□□□□□ -2.29
VPS35-212ENST00000640313 CDK11AQ9UQ88 783 aaPredicted RBP0.73□□□□□ -2.29
VPS35-212ENST00000640313 TBX22Q9Y458 520 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 GPR45Q9Y5Y3 372 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 A0A087X0B3 334 aa0.72□□□□□ -2.29
VPS35-212ENST00000640313 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP0.72□□□□□ -2.29
VPS35-212ENST00000640313 A0A1W2PPC1 479 aa0.72□□□□□ -2.29
VPS35-212ENST00000640313 RPS10-NUDT3A0A1W2PQS6 291 aa0.72□□□□□ -2.29
VPS35-212ENST00000640313 F8W810 466 aa0.72□□□□□ -2.29
VPS35-212ENST00000640313 PSMD9O00233 223 aa0.72□□□□□ -2.29
VPS35-212ENST00000640313 CLIC1O00299 241 aa0.72□□□□□ -2.29
VPS35-212ENST00000640313 SYT5O00445 386 aa0.72□□□□□ -2.29
VPS35-212ENST00000640313 ENPP3O14638 875 aa0.72□□□□□ -2.29
VPS35-212ENST00000640313 PLAUP00749 431 aa0.72□□□□□ -2.29
VPS35-212ENST00000640313 F7P08709 466 aaPredicted RBP0.72□□□□□ -2.29
VPS35-212ENST00000640313 FTH1P19P0C7X4 201 aa0.72□□□□□ -2.29
VPS35-212ENST00000640313 RNF224P0DH78 156 aa0.72□□□□□ -2.29
VPS35-212ENST00000640313 OSMP13725 252 aa0.72□□□□□ -2.29
VPS35-212ENST00000640313 AGXTP21549 392 aa0.72□□□□□ -2.29
VPS35-212ENST00000640313 ANOS1P23352 680 aa0.72□□□□□ -2.29
VPS35-212ENST00000640313 PRDX5P30044 214 aa0.72□□□□□ -2.29
VPS35-212ENST00000640313 DIO1P49895 249 aa0.72□□□□□ -2.29
VPS35-212ENST00000640313 FXR1P51114 621 aaKnown RBP eCLIP0.72□□□□□ -2.29
VPS35-212ENST00000640313 SLC12A2P55011 1212 aa0.72□□□□□ -2.29
VPS35-212ENST00000640313 LILRA4P59901 499 aa0.72□□□□□ -2.29
VPS35-212ENST00000640313 SEC61A1P61619 476 aaKnown RBP0.72□□□□□ -2.29
VPS35-212ENST00000640313 SUMO2P61956 95 aaKnown RBP0.72□□□□□ -2.29
VPS35-212ENST00000640313 ROR2Q01974 943 aaKnown RBP0.72□□□□□ -2.29
VPS35-212ENST00000640313 ILF3Q12906 894 aaKnown RBP eCLIP0.72□□□□□ -2.29
VPS35-212ENST00000640313 SLC14A1Q13336 389 aa0.72□□□□□ -2.29
VPS35-212ENST00000640313 KCNJ12Q14500 433 aa0.72□□□□□ -2.29
VPS35-212ENST00000640313 SF3A1Q15459 793 aaKnown RBP0.72□□□□□ -2.29
VPS35-212ENST00000640313 PFKFB3Q16875 520 aaPredicted RBP0.72□□□□□ -2.29
VPS35-212ENST00000640313 LY6KQ17RY6 165 aa0.72□□□□□ -2.29
VPS35-212ENST00000640313 CCDC144BQ3MJ40 725 aa0.72□□□□□ -2.29
VPS35-212ENST00000640313 KHDC1Q4VXA5 237 aaKnown RBP0.72□□□□□ -2.29
VPS35-212ENST00000640313 C14orf177Q52M58 125 aa0.72□□□□□ -2.29
VPS35-212ENST00000640313 DEPDC1Q5TB30 811 aa0.72□□□□□ -2.29
VPS35-212ENST00000640313 NUGGCQ68CJ6 796 aa0.72□□□□□ -2.29
VPS35-212ENST00000640313 ZNF772Q68DY9 489 aaPredicted RBP0.72□□□□□ -2.29
VPS35-212ENST00000640313 TTLL5Q6EMB2 1281 aa0.72□□□□□ -2.29
VPS35-212ENST00000640313 PPP4R3AQ6IN85 833 aa0.72□□□□□ -2.29
VPS35-212ENST00000640313 SLC4A10Q6U841 1118 aa0.72□□□□□ -2.29
VPS35-212ENST00000640313 DPY19L3Q6ZPD9 716 aa0.72□□□□□ -2.29
VPS35-212ENST00000640313 KIAA0907Q7Z7F0 614 aaPredicted RBP0.72□□□□□ -2.29
VPS35-212ENST00000640313 FAM90A1Q86YD7 464 aa0.72□□□□□ -2.29
VPS35-212ENST00000640313 KRTAP7-1Q8IUC3 87 aa0.72□□□□□ -2.29
VPS35-212ENST00000640313 LYG1Q8N1E2 194 aa0.72□□□□□ -2.29
VPS35-212ENST00000640313 PRR26Q8N8Z3 221 aa0.72□□□□□ -2.29
VPS35-212ENST00000640313 FAM46DQ8NEK8 389 aa0.72□□□□□ -2.29
VPS35-212ENST00000640313 PMFBP1Q8TBY8 1022 aa0.72□□□□□ -2.29
VPS35-212ENST00000640313 NSUN6Q8TEA1 469 aaKnown RBP0.72□□□□□ -2.29
VPS35-212ENST00000640313 UBXN4Q92575 508 aa0.72□□□□□ -2.29
VPS35-212ENST00000640313 LPAR1Q92633 364 aa0.72□□□□□ -2.29
VPS35-212ENST00000640313 P2RY11Q96G91 374 aa0.72□□□□□ -2.29
VPS35-212ENST00000640313 HIC2Q96JB3 615 aa0.72□□□□□ -2.29
VPS35-212ENST00000640313 MOGAT1Q96PD6 335 aa0.72□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms