RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 HLA-BQ31612 363 aa17.41■□□□□ 0.38
CLN3-264ENST00000637985 C10orf76Q5T2E6 689 aa17.41■□□□□ 0.38
CLN3-264ENST00000637985 IL27RAQ6UWB1 636 aa17.41■□□□□ 0.38
CLN3-264ENST00000637985 TERB1Q8NA31 727 aa17.41■□□□□ 0.38
CLN3-264ENST00000637985 EPSTI1Q96J88 318 aa17.41■□□□□ 0.38
CLN3-264ENST00000637985 MRGPRX1Q96LB2 322 aa17.41■□□□□ 0.38
CLN3-264ENST00000637985 CEP295NLQ96MC4 621 aa17.41■□□□□ 0.38
CLN3-264ENST00000637985 ZNF560Q96MR9 790 aa17.41■□□□□ 0.38
CLN3-264ENST00000637985 FCRL3Q96P31 734 aaPredicted RBP17.41■□□□□ 0.38
CLN3-264ENST00000637985 TBC1D14Q9P2M4 693 aa17.41■□□□□ 0.38
CLN3-264ENST00000637985 DEC1Q9P2X7 70 aa17.41■□□□□ 0.38
CLN3-264ENST00000637985 STK17AQ9UEE5 414 aa17.41■□□□□ 0.38
CLN3-264ENST00000637985 MTMR6Q9Y217 621 aa17.41■□□□□ 0.38
CLN3-264ENST00000637985 COL6A6A6NMZ7 2263 aa17.41■□□□□ 0.38
CLN3-264ENST00000637985 CAPN8A6NHC0 703 aa17.4■□□□□ 0.38
CLN3-264ENST00000637985 HOXC11O43248 304 aaPredicted RBP17.4■□□□□ 0.38
CLN3-264ENST00000637985 STX6O43752 255 aa17.4■□□□□ 0.38
CLN3-264ENST00000637985 PNPLA4P41247 253 aa17.4■□□□□ 0.38
CLN3-264ENST00000637985 GTF2BQ00403 316 aa17.4■□□□□ 0.38
CLN3-264ENST00000637985 CFHR1Q03591 330 aa17.4■□□□□ 0.38
CLN3-264ENST00000637985 PREPLQ4J6C6 727 aaPredicted RBP17.4■□□□□ 0.38
CLN3-264ENST00000637985 FAM173BQ6P4H8 233 aa17.4■□□□□ 0.38
CLN3-264ENST00000637985 FAM171BQ6P995 826 aa17.4■□□□□ 0.38
CLN3-264ENST00000637985 PCSK4Q6UW60 755 aa17.4■□□□□ 0.38
CLN3-264ENST00000637985 NUDT18Q6ZVK8 323 aa17.4■□□□□ 0.38
CLN3-264ENST00000637985 USP49Q70CQ1 688 aa17.4■□□□□ 0.38
CLN3-264ENST00000637985 TMEM86AQ8N2M4 240 aa17.4■□□□□ 0.38
CLN3-264ENST00000637985 ZCCHC9Q8N567 271 aaKnown RBP17.4■□□□□ 0.38
CLN3-264ENST00000637985 NAT16Q8N8M0 369 aa17.4■□□□□ 0.38
CLN3-264ENST00000637985 KRI1Q8N9T8 703 aaKnown RBP17.4■□□□□ 0.38
CLN3-264ENST00000637985 ACOX2Q99424 681 aa17.4■□□□□ 0.38
CLN3-264ENST00000637985 GABRG3Q99928 467 aa17.4■□□□□ 0.38
CLN3-264ENST00000637985 TTLL2Q9BWV7 592 aa17.4■□□□□ 0.38
CLN3-264ENST00000637985 ZHX3Q9H4I2 956 aa17.4■□□□□ 0.38
CLN3-264ENST00000637985 BTBD3Q9Y2F9 522 aa17.4■□□□□ 0.38
CLN3-264ENST00000637985 TNFSF14O43557 240 aa17.39■□□□□ 0.37
CLN3-264ENST00000637985 OAS1P00973 400 aaKnown RBP17.39■□□□□ 0.37
CLN3-264ENST00000637985 CD6P30203 668 aa17.39■□□□□ 0.37
CLN3-264ENST00000637985 PPP3CCP48454 512 aa17.39■□□□□ 0.37
CLN3-264ENST00000637985 POU5F1Q01860 360 aaKnown RBP17.39■□□□□ 0.37
CLN3-264ENST00000637985 SLC39A14Q15043 492 aa17.39■□□□□ 0.37
CLN3-264ENST00000637985 RRAGBQ5VZM2 374 aa17.39■□□□□ 0.37
CLN3-264ENST00000637985 EGFLAMQ63HQ2 1017 aa17.39■□□□□ 0.37
CLN3-264ENST00000637985 LRRC69Q6ZNQ3 347 aa17.39■□□□□ 0.37
CLN3-264ENST00000637985 DENND5BQ6ZUT9 1274 aa17.39■□□□□ 0.37
CLN3-264ENST00000637985 OSTM1Q86WC4 334 aa17.39■□□□□ 0.37
CLN3-264ENST00000637985 SNX21Q969T3 373 aa17.39■□□□□ 0.37
CLN3-264ENST00000637985 OTUB2Q96DC9 234 aa17.39■□□□□ 0.37
CLN3-264ENST00000637985 CLIC6Q96NY7 704 aa17.39■□□□□ 0.37
CLN3-264ENST00000637985 FIZ1Q96SL8 496 aa17.39■□□□□ 0.37
CLN3-264ENST00000637985 SLC6A17Q9H1V8 727 aa17.39■□□□□ 0.37
CLN3-264ENST00000637985 ST6GALNAC4Q9H4F1 302 aa17.39■□□□□ 0.37
CLN3-264ENST00000637985 TEX51A0A1B0GUA7 166 aa17.38■□□□□ 0.37
CLN3-264ENST00000637985 E2F8A0AVK6 867 aa17.38■□□□□ 0.37
CLN3-264ENST00000637985 MEI4A8MW99 385 aa17.38■□□□□ 0.37
CLN3-264ENST00000637985 PLK4O00444 970 aa17.38■□□□□ 0.37
CLN3-264ENST00000637985 GABRDO14764 452 aa17.38■□□□□ 0.37
CLN3-264ENST00000637985 TRIM24O15164 1050 aa17.38■□□□□ 0.37
CLN3-264ENST00000637985 BCAT2O15382 392 aaPredicted RBP17.38■□□□□ 0.37
CLN3-264ENST00000637985 HCRTO43612 131 aa17.38■□□□□ 0.37
CLN3-264ENST00000637985 TLX3O43711 291 aaPredicted RBP17.38■□□□□ 0.37
CLN3-264ENST00000637985 HUS1O60921 280 aa17.38■□□□□ 0.37
CLN3-264ENST00000637985 CEBPZQ03701 1054 aaKnown RBP17.38■□□□□ 0.37
CLN3-264ENST00000637985 BTBD8Q5XKL5 378 aa17.38■□□□□ 0.37
CLN3-264ENST00000637985 SDE2Q6IQ49 451 aa17.38■□□□□ 0.37
CLN3-264ENST00000637985 VSTM1Q6UX27 236 aa17.38■□□□□ 0.37
CLN3-264ENST00000637985 GPR155Q7Z3F1 870 aa17.38■□□□□ 0.37
CLN3-264ENST00000637985 DDX42Q86XP3 938 aaKnown RBP eCLIP17.38■□□□□ 0.37
CLN3-264ENST00000637985 NT5DC4Q86YG4 428 aa17.38■□□□□ 0.37
CLN3-264ENST00000637985 LURAP1LQ8IV03 231 aa17.38■□□□□ 0.37
CLN3-264ENST00000637985 CHPFQ8IZ52 775 aa17.38■□□□□ 0.37
CLN3-264ENST00000637985 CADM4Q8NFZ8 388 aa17.38■□□□□ 0.37
CLN3-264ENST00000637985 NXPE2Q96DL1 559 aa17.38■□□□□ 0.37
CLN3-264ENST00000637985 ERLEC1Q96DZ1 483 aa17.38■□□□□ 0.37
CLN3-264ENST00000637985 FOXD4L1Q9NU39 408 aa17.38■□□□□ 0.37
CLN3-264ENST00000637985 WSB2Q9NYS7 404 aaPredicted RBP17.38■□□□□ 0.37
CLN3-264ENST00000637985 WDR3Q9UNX4 943 aaKnown RBP eCLIP17.38■□□□□ 0.37
CLN3-264ENST00000637985 ARHGAP6O43182 974 aa17.37■□□□□ 0.37
CLN3-264ENST00000637985 NCAM1P13591 858 aa17.37■□□□□ 0.37
CLN3-264ENST00000637985 PDIA4P13667 645 aaKnown RBP17.37■□□□□ 0.37
CLN3-264ENST00000637985 PCSK1P29120 753 aa17.37■□□□□ 0.37
CLN3-264ENST00000637985 LHX1P48742 406 aa17.37■□□□□ 0.37
CLN3-264ENST00000637985 SUZ12Q15022 739 aaKnown RBP17.37■□□□□ 0.37
CLN3-264ENST00000637985 ADALQ6DHV7 355 aa17.37■□□□□ 0.37
CLN3-264ENST00000637985 DHRS13Q6UX07 377 aa17.37■□□□□ 0.37
CLN3-264ENST00000637985 C4orf50Q6ZRC1 276 aa17.37■□□□□ 0.37
CLN3-264ENST00000637985 CCDC73Q6ZRK6 1079 aa17.37■□□□□ 0.37
CLN3-264ENST00000637985 SV2BQ7L1I2 683 aa17.37■□□□□ 0.37
CLN3-264ENST00000637985 METTL3Q86U44 580 aaKnown RBP17.37■□□□□ 0.37
CLN3-264ENST00000637985 TMPRSS12Q86WS5 348 aa17.37■□□□□ 0.37
CLN3-264ENST00000637985 TOE1Q96GM8 510 aaKnown RBP17.37■□□□□ 0.37
CLN3-264ENST00000637985 USP28Q96RU2 1077 aa17.37■□□□□ 0.37
CLN3-264ENST00000637985 MIR1-1HGQ9H1L0 117 aa17.37■□□□□ 0.37
CLN3-264ENST00000637985 CLMPQ9H6B4 373 aa17.37■□□□□ 0.37
CLN3-264ENST00000637985 GDAP2Q9NXN4 497 aa17.37■□□□□ 0.37
CLN3-264ENST00000637985 EHD2Q9NZN4 543 aa17.37■□□□□ 0.37
CLN3-264ENST00000637985 SEL1LQ9UBV2 794 aa17.37■□□□□ 0.37
CLN3-264ENST00000637985 RAD54BQ9Y620 910 aa17.37■□□□□ 0.37
CLN3-264ENST00000637985 ANKRD63C9JTQ0 380 aa17.36■□□□□ 0.37
CLN3-264ENST00000637985 RRP8O43159 456 aaKnown RBP17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms