RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-223ENST00000627587 MIS12Q9H081 205 aa9.99□□□□□ -0.81
PDLIM5-223ENST00000627587 CARD9Q9H257 536 aa9.99□□□□□ -0.81
PDLIM5-223ENST00000627587 RBM12Q9NTZ6 932 aaKnown RBP9.99□□□□□ -0.81
PDLIM5-223ENST00000627587 DDX43Q9NXZ2 648 aaKnown RBP9.99□□□□□ -0.81
PDLIM5-223ENST00000627587 WDR35Q9P2L0 1181 aa9.99□□□□□ -0.81
PDLIM5-223ENST00000627587 KANSL3Q9P2N6 904 aa9.99□□□□□ -0.81
PDLIM5-223ENST00000627587 PCDHA3Q9Y5H8 950 aa9.99□□□□□ -0.81
PDLIM5-223ENST00000627587 SIGLEC16A6NMB1 481 aa9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 CLDN5O00501 218 aa9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 BEST1O76090 585 aa9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 SETSIPP0DME0 302 aa9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 PTPN1P18031 435 aaKnown RBP9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 MTHFRP42898 656 aa9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 SLC1A1P43005 524 aa9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 LHX1P48742 406 aa9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 TCF15Q12870 199 aa9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 ZNF211Q13398 564 aaPredicted RBP9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 LCE2DQ5TA82 110 aaPredicted RBP9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 PLPP4Q5VZY2 271 aa9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 DCUN1D2Q6PH85 259 aa9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 SYCE2Q6PIF2 218 aa9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 TMEM110Q86TL2 294 aa9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 ZDHHC14Q8IZN3 488 aa9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 PLCD3Q8N3E9 789 aa9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 MRPL43Q8N983 215 aaKnown RBP9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 ANKRD52Q8NB46 1076 aa9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 VN1R2Q8NFZ6 395 aa9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 ASIC4Q96FT7 647 aa9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 RIPOR3Q96MK2 946 aa9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 PKMYT1Q99640 499 aa9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 HNRNPABQ99729 332 aaKnown RBP9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 ADAM7Q9H2U9 754 aa9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 ST7Q9NRC1 585 aa9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 STK39Q9UEW8 545 aa9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 LCMT1Q9UIC8 334 aa9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 TTC7AQ9ULT0 858 aaPredicted RBP9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 ZNF638Q14966 1978 aaKnown RBP9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 ARHGEF37A1IGU5 675 aa9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 CCDC66A2RUB6 948 aa9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 MYBPHLA2RUH7 354 aa9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 F8VP50 259 aa9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 GOLGA8SH3BPF8 625 aa9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 PAPSS1O43252 624 aaPredicted RBP9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 CEP104O60308 925 aa9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 PYGMP11217 842 aa9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 ODC1P11926 461 aa9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 ADORA2BP29275 332 aa9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 MAN1A1P33908 653 aa9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 ALDH7A1P49419 539 aaKnown RBP9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 RGS7P49802 495 aa9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 CACNA2D1P54289 1103 aa9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 BCAT1P54687 386 aa9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 RNASELQ05823 741 aaKnown RBP9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 ZNF268Q14587 947 aaPredicted RBP9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 TAF5Q15542 800 aa9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 DCLRE1AQ6PJP8 1040 aa9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 OLFML1Q6UWY5 402 aa9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 FAM183BPQ6ZVS7 135 aa9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 ANKS1BQ7Z6G8 1248 aa9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 EMC1Q8N766 993 aa9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 NIPA2Q8N8Q9 360 aa9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 OR10T2Q8NGX3 314 aa9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 SPATA18Q8TC71 538 aa9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 ATOH1Q92858 354 aaPredicted RBP9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 SUSD3Q96L08 255 aa9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 FAM193BQ96PV7 902 aaPredicted RBP9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 PNKPQ96T60 521 aa9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 HERPUD2Q9BSE4 406 aa9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 B3GNT5Q9BYG0 378 aa9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 METTL5Q9NRN9 209 aaKnown RBP9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 DZANK1Q9NVP4 752 aa9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 IP6K2Q9UHH9 426 aa9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 SORCS3Q9UPU3 1222 aa9.98□□□□□ -0.81
PDLIM5-223ENST00000627587 TMEM189-UBE2V1I3L0A0 370 aa9.97□□□□□ -0.81
PDLIM5-223ENST00000627587 SNX16P57768 344 aa9.97□□□□□ -0.81
PDLIM5-223ENST00000627587 BST2Q10589 180 aaKnown RBP9.97□□□□□ -0.81
PDLIM5-223ENST00000627587 MTMR3Q13615 1198 aa9.97□□□□□ -0.81
PDLIM5-223ENST00000627587 MDH1BQ5I0G3 518 aa9.97□□□□□ -0.81
PDLIM5-223ENST00000627587 TXNRD3NBQ6F5E7 133 aa9.97□□□□□ -0.81
PDLIM5-223ENST00000627587 METTL23Q86XA0 190 aa9.97□□□□□ -0.81
PDLIM5-223ENST00000627587 SLC39A11Q8N1S5 342 aa9.97□□□□□ -0.81
PDLIM5-223ENST00000627587 MMGT1Q8N4V1 131 aa9.97□□□□□ -0.81
PDLIM5-223ENST00000627587 CLEC4CQ8WTT0 213 aa9.97□□□□□ -0.81
PDLIM5-223ENST00000627587 STK32AQ8WU08 396 aa9.97□□□□□ -0.81
PDLIM5-223ENST00000627587 PCED1BQ96HM7 432 aa9.97□□□□□ -0.81
PDLIM5-223ENST00000627587 TMEM209Q96SK2 561 aa9.97□□□□□ -0.81
PDLIM5-223ENST00000627587 SYT15Q9BQS2 421 aa9.97□□□□□ -0.81
PDLIM5-223ENST00000627587 NRDE2Q9H7Z3 1164 aa9.97□□□□□ -0.81
PDLIM5-223ENST00000627587 DSEQ9UL01 958 aa9.97□□□□□ -0.81
PDLIM5-223ENST00000627587 GREB1Q4ZG55 1949 aa9.96□□□□□ -0.81
PDLIM5-223ENST00000627587 TCRBV7S2A1N4TA0A589 114 aa9.96□□□□□ -0.81
PDLIM5-223ENST00000627587 HIDE1A8MVS5 230 aa9.96□□□□□ -0.81
PDLIM5-223ENST00000627587 KRT3P12035 628 aa9.96□□□□□ -0.81
PDLIM5-223ENST00000627587 H2AFXP16104 143 aaPredicted RBP9.96□□□□□ -0.81
PDLIM5-223ENST00000627587 PCSK1P29120 753 aa9.96□□□□□ -0.81
PDLIM5-223ENST00000627587 FLT3P36888 993 aa9.96□□□□□ -0.81
PDLIM5-223ENST00000627587 PLA2G4AP47712 749 aa9.96□□□□□ -0.81
PDLIM5-223ENST00000627587 SLC8A3P57103 927 aa9.96□□□□□ -0.81
PDLIM5-223ENST00000627587 ATP13A4Q4VNC1 1196 aa9.96□□□□□ -0.81
PDLIM5-223ENST00000627587 RAB6CQ53S08 254 aa9.96□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms