RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 NAIF1Q69YI7 327 aaPredicted RBP16.1■□□□□ 0.17
TRIM28-203ENST00000593582 OTUB2Q96DC9 234 aa16.1■□□□□ 0.17
TRIM28-203ENST00000593582 ZFRQ96KR1 1074 aaKnown RBP16.1■□□□□ 0.17
TRIM28-203ENST00000593582 HINFPQ9BQA5 517 aa16.1■□□□□ 0.17
TRIM28-203ENST00000593582 SRRTQ9BXP5 876 aaKnown RBP16.1■□□□□ 0.17
TRIM28-203ENST00000593582 CYLDQ9NQC7 956 aa16.1■□□□□ 0.17
TRIM28-203ENST00000593582 RIF1Q5UIP0 2472 aaKnown RBP16.09■□□□□ 0.17
TRIM28-203ENST00000593582 LILRB5O75023 590 aa16.09■□□□□ 0.17
TRIM28-203ENST00000593582 RNF40O75150 1001 aa16.09■□□□□ 0.17
TRIM28-203ENST00000593582 ADH1CP00326 375 aa16.09■□□□□ 0.17
TRIM28-203ENST00000593582 CYP17A1P05093 508 aa16.09■□□□□ 0.17
TRIM28-203ENST00000593582 PSEN1P49768 467 aa16.09■□□□□ 0.17
TRIM28-203ENST00000593582 GOLGA8FQ08AF8 430 aa16.09■□□□□ 0.17
TRIM28-203ENST00000593582 GOLGA8DPQ0D2H9 430 aa16.09■□□□□ 0.17
TRIM28-203ENST00000593582 DHCR24Q15392 516 aa16.09■□□□□ 0.17
TRIM28-203ENST00000593582 SGO2Q562F6 1265 aa16.09■□□□□ 0.17
TRIM28-203ENST00000593582 CCDC186Q7Z3E2 898 aa16.09■□□□□ 0.17
TRIM28-203ENST00000593582 TADA2BQ86TJ2 420 aa16.09■□□□□ 0.17
TRIM28-203ENST00000593582 TRIM59Q8IWR1 403 aa16.09■□□□□ 0.17
TRIM28-203ENST00000593582 ANKRD52Q8NB46 1076 aa16.09■□□□□ 0.17
TRIM28-203ENST00000593582 SUMF1Q8NBK3 374 aa16.09■□□□□ 0.17
TRIM28-203ENST00000593582 CCDC26Q8TAB7 109 aa16.09■□□□□ 0.17
TRIM28-203ENST00000593582 NT5C1BQ96P26 610 aa16.09■□□□□ 0.17
TRIM28-203ENST00000593582 UBXN6Q9BZV1 441 aa16.09■□□□□ 0.17
TRIM28-203ENST00000593582 EPC1Q9H2F5 836 aa16.09■□□□□ 0.17
TRIM28-203ENST00000593582 HESX1Q9UBX0 185 aa16.09■□□□□ 0.17
TRIM28-203ENST00000593582 RWDD2AQ9UIY3 292 aa16.09■□□□□ 0.17
TRIM28-203ENST00000593582 NAGPAQ9UK23 515 aa16.09■□□□□ 0.17
TRIM28-203ENST00000593582 KIAA1257Q9ULG3 409 aa16.09■□□□□ 0.17
TRIM28-203ENST00000593582 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.09■□□□□ 0.17
TRIM28-203ENST00000593582 HELZP42694 1942 aaKnown RBP16.09■□□□□ 0.17
TRIM28-203ENST00000593582 A0A1W2PQH9 124 aa16.08■□□□□ 0.16
TRIM28-203ENST00000593582 K7ESF4 209 aa16.08■□□□□ 0.16
TRIM28-203ENST00000593582 TBX18O95935 607 aa16.08■□□□□ 0.16
TRIM28-203ENST00000593582 CCDC192P0DO97 292 aa16.08■□□□□ 0.16
TRIM28-203ENST00000593582 RARGP13631 454 aa16.08■□□□□ 0.16
TRIM28-203ENST00000593582 CD19P15391 556 aa16.08■□□□□ 0.16
TRIM28-203ENST00000593582 MARSP56192 900 aaKnown RBP16.08■□□□□ 0.16
TRIM28-203ENST00000593582 KCNH2Q12809 1159 aa16.08■□□□□ 0.16
TRIM28-203ENST00000593582 GOLGA7BQ2TAP0 167 aa16.08■□□□□ 0.16
TRIM28-203ENST00000593582 KLHDC10Q6PID8 442 aa16.08■□□□□ 0.16
TRIM28-203ENST00000593582 RHBDF2Q6PJF5 856 aa16.08■□□□□ 0.16
TRIM28-203ENST00000593582 LONP2Q86WA8 852 aa16.08■□□□□ 0.16
TRIM28-203ENST00000593582 PPM1KQ8N3J5 372 aa16.08■□□□□ 0.16
TRIM28-203ENST00000593582 RUBCNQ92622 972 aa16.08■□□□□ 0.16
TRIM28-203ENST00000593582 CDK5RAP1Q96SZ6 601 aaKnown RBP16.08■□□□□ 0.16
TRIM28-203ENST00000593582 MTPAPQ9NVV4 582 aaKnown RBP eCLIP16.08■□□□□ 0.168e-11■□□□□ 8
TRIM28-203ENST00000593582 C2orf42Q9NWW7 574 aa16.08■□□□□ 0.16
TRIM28-203ENST00000593582 OSER1Q9NX31 292 aa16.08■□□□□ 0.16
TRIM28-203ENST00000593582 DNMT3LQ9UJW3 386 aa16.08■□□□□ 0.16
TRIM28-203ENST00000593582 USP3Q9Y6I4 520 aa16.08■□□□□ 0.16
TRIM28-203ENST00000593582 PTPRZ1P23471 2315 aaPredicted RBP16.08■□□□□ 0.16
TRIM28-203ENST00000593582 CHURC1-FNTBB4DL54 471 aa16.07■□□□□ 0.16
TRIM28-203ENST00000593582 AFPP02771 609 aaKnown RBP16.07■□□□□ 0.16
TRIM28-203ENST00000593582 IRF1P10914 325 aa16.07■□□□□ 0.16
TRIM28-203ENST00000593582 RALAP11233 206 aa16.07■□□□□ 0.16
TRIM28-203ENST00000593582 VDRP11473 427 aa16.07■□□□□ 0.16
TRIM28-203ENST00000593582 ADH5P11766 374 aa16.07■□□□□ 0.16
TRIM28-203ENST00000593582 HOXA6P31267 233 aa16.07■□□□□ 0.16
TRIM28-203ENST00000593582 FNTBP49356 437 aa16.07■□□□□ 0.16
TRIM28-203ENST00000593582 BCAT1P54687 386 aa16.07■□□□□ 0.16
TRIM28-203ENST00000593582 C10orf120Q5SQS8 335 aa16.07■□□□□ 0.16
TRIM28-203ENST00000593582 HEATR6Q6AI08 1181 aaKnown RBP16.07■□□□□ 0.16
TRIM28-203ENST00000593582 PKN3Q6P5Z2 889 aa16.07■□□□□ 0.16
TRIM28-203ENST00000593582 TMEM270Q6UE05 265 aa16.07■□□□□ 0.16
TRIM28-203ENST00000593582 PIGZQ86VD9 579 aa16.07■□□□□ 0.16
TRIM28-203ENST00000593582 TTC30AQ86WT1 665 aa16.07■□□□□ 0.16
TRIM28-203ENST00000593582 ARHGAP18Q8N392 663 aa16.07■□□□□ 0.16
TRIM28-203ENST00000593582 SECISBP2LQ93073 1101 aaKnown RBP16.07■□□□□ 0.16
TRIM28-203ENST00000593582 KLF16Q9BXK1 252 aaPredicted RBP16.07■□□□□ 0.16
TRIM28-203ENST00000593582 NMUR1Q9HB89 426 aa16.07■□□□□ 0.16
TRIM28-203ENST00000593582 CLIC5Q9NZA1 410 aa16.07■□□□□ 0.16
TRIM28-203ENST00000593582 TSPAN16Q9UKR8 245 aa16.07■□□□□ 0.16
TRIM28-203ENST00000593582 RAB23Q9ULC3 237 aa16.07■□□□□ 0.16
TRIM28-203ENST00000593582 SMG5Q9UPR3 1016 aaKnown RBP16.07■□□□□ 0.16
TRIM28-203ENST00000593582 SLC8A2Q9UPR5 921 aa16.07■□□□□ 0.16
TRIM28-203ENST00000593582 PCDHB4Q9Y5E5 795 aa16.07■□□□□ 0.16
TRIM28-203ENST00000593582 FANCMQ8IYD8 2048 aa16.06■□□□□ 0.16
TRIM28-203ENST00000593582 MYH10P35580 1976 aa16.06■□□□□ 0.16
TRIM28-203ENST00000593582 PAEPP09466 180 aa16.06■□□□□ 0.16
TRIM28-203ENST00000593582 CNR2P34972 360 aa16.06■□□□□ 0.16
TRIM28-203ENST00000593582 OPRD1P41143 372 aa16.06■□□□□ 0.16
TRIM28-203ENST00000593582 EIF2DP41214 584 aaKnown RBP16.06■□□□□ 0.16
TRIM28-203ENST00000593582 PLA2G4AP47712 749 aa16.06■□□□□ 0.16
TRIM28-203ENST00000593582 GCNT1Q02742 428 aa16.06■□□□□ 0.16
TRIM28-203ENST00000593582 DMWDQ09019 674 aa16.06■□□□□ 0.16
TRIM28-203ENST00000593582 BST2Q10589 180 aaKnown RBP16.06■□□□□ 0.16
TRIM28-203ENST00000593582 GAB4Q2WGN9 574 aa16.06■□□□□ 0.16
TRIM28-203ENST00000593582 LY6G5CQ5SRR4 150 aa16.06■□□□□ 0.16
TRIM28-203ENST00000593582 BTBD8Q5XKL5 378 aa16.06■□□□□ 0.16
TRIM28-203ENST00000593582 HTR3DQ70Z44 454 aa16.06■□□□□ 0.16
TRIM28-203ENST00000593582 BBS7Q8IWZ6 715 aa16.06■□□□□ 0.16
TRIM28-203ENST00000593582 ZNF276Q8N554 614 aa16.06■□□□□ 0.16
TRIM28-203ENST00000593582 UBR7Q8N806 425 aa16.06■□□□□ 0.16
TRIM28-203ENST00000593582 MLKLQ8NB16 471 aa16.06■□□□□ 0.16
TRIM28-203ENST00000593582 EHBP1Q8NDI1 1231 aa16.06■□□□□ 0.16
TRIM28-203ENST00000593582 RPLP0P6Q8NHW5 317 aa16.06■□□□□ 0.16
TRIM28-203ENST00000593582 LMO3Q8TAP4 145 aa16.06■□□□□ 0.16
TRIM28-203ENST00000593582 ACDQ96AP0 544 aa16.06■□□□□ 0.16
TRIM28-203ENST00000593582 PNKPQ96T60 521 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms