RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 RALAP11233 206 aa13.05□□□□□ -0.32
SS18-225ENST00000585121 BMP6P22004 513 aa13.05□□□□□ -0.32
SS18-225ENST00000585121 ATP5C1P36542 298 aaKnown RBP13.05□□□□□ -0.32
SS18-225ENST00000585121 KIF11P52732 1056 aa13.05□□□□□ -0.32
SS18-225ENST00000585121 RAD23BP54727 409 aa13.05□□□□□ -0.32
SS18-225ENST00000585121 DHCR24Q15392 516 aa13.05□□□□□ -0.32
SS18-225ENST00000585121 CAMK4Q16566 473 aa13.05□□□□□ -0.32
SS18-225ENST00000585121 SGO2Q562F6 1265 aa13.05□□□□□ -0.32
SS18-225ENST00000585121 ARHGAP17Q68EM7 881 aa13.05□□□□□ -0.32
SS18-225ENST00000585121 CDK5RAP1Q96SZ6 601 aaKnown RBP13.05□□□□□ -0.32
SS18-225ENST00000585121 ARID3AQ99856 593 aa13.05□□□□□ -0.32
SS18-225ENST00000585121 SRRTQ9BXP5 876 aaKnown RBP13.05□□□□□ -0.32
SS18-225ENST00000585121 UBXN6Q9BZV1 441 aa13.05□□□□□ -0.32
SS18-225ENST00000585121 EPC1Q9H2F5 836 aa13.05□□□□□ -0.32
SS18-225ENST00000585121 NCDNQ9UBB6 729 aa13.05□□□□□ -0.32
SS18-225ENST00000585121 HESX1Q9UBX0 185 aa13.05□□□□□ -0.32
SS18-225ENST00000585121 LSM7Q9UK45 103 aaKnown RBP13.05□□□□□ -0.32
SS18-225ENST00000585121 KIAA1257Q9ULG3 409 aa13.05□□□□□ -0.32
SS18-225ENST00000585121 GREB1Q4ZG55 1949 aa13.05□□□□□ -0.32
SS18-225ENST00000585121 WDR87Q6ZQQ6 2873 aa13.04□□□□□ -0.32
SS18-225ENST00000585121 CHURC1-FNTBB4DL54 471 aa13.04□□□□□ -0.32
SS18-225ENST00000585121 HHLA1C9JL84 531 aa13.04□□□□□ -0.32
SS18-225ENST00000585121 CYP26A1O43174 497 aa13.04□□□□□ -0.32
SS18-225ENST00000585121 CYP17A1P05093 508 aa13.04□□□□□ -0.32
SS18-225ENST00000585121 IRF1P10914 325 aa13.04□□□□□ -0.32
SS18-225ENST00000585121 TDGF1P13385 188 aa13.04□□□□□ -0.32
SS18-225ENST00000585121 RARGP13631 454 aa13.04□□□□□ -0.32
SS18-225ENST00000585121 CD19P15391 556 aa13.04□□□□□ -0.32
SS18-225ENST00000585121 CNR2P34972 360 aa13.04□□□□□ -0.32
SS18-225ENST00000585121 PREPLQ4J6C6 727 aaPredicted RBP13.04□□□□□ -0.32
SS18-225ENST00000585121 BTBD8Q5XKL5 378 aa13.04□□□□□ -0.32
SS18-225ENST00000585121 HEATR6Q6AI08 1181 aaKnown RBP13.04□□□□□ -0.32
SS18-225ENST00000585121 GPRIN1Q7Z2K8 1008 aa13.04□□□□□ -0.32
SS18-225ENST00000585121 LONP2Q86WA8 852 aa13.04□□□□□ -0.32
SS18-225ENST00000585121 ARHGAP18Q8N392 663 aa13.04□□□□□ -0.32
SS18-225ENST00000585121 ANKRD52Q8NB46 1076 aa13.04□□□□□ -0.32
SS18-225ENST00000585121 SUMF1Q8NBK3 374 aa13.04□□□□□ -0.32
SS18-225ENST00000585121 ACDQ96AP0 544 aa13.04□□□□□ -0.32
SS18-225ENST00000585121 FBRSL1Q9HCM7 1045 aaKnown RBP13.04□□□□□ -0.32
SS18-225ENST00000585121 DNMT3LQ9UJW3 386 aa13.04□□□□□ -0.32
SS18-225ENST00000585121 NAGPAQ9UK23 515 aa13.04□□□□□ -0.32
SS18-225ENST00000585121 SMG5Q9UPR3 1016 aaKnown RBP13.04□□□□□ -0.32
SS18-225ENST00000585121 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.04□□□□□ -0.32
SS18-225ENST00000585121 OBSL1O75147 1896 aa13.04□□□□□ -0.32
SS18-225ENST00000585121 ANAPC1Q9H1A4 1944 aa13.04□□□□□ -0.32
SS18-225ENST00000585121 A0A1W2PQH9 124 aa13.03□□□□□ -0.32
SS18-225ENST00000585121 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.03□□□□□ -0.32
SS18-225ENST00000585121 SCAMP3O14828 347 aaKnown RBP13.03□□□□□ -0.32
SS18-225ENST00000585121 AFPP02771 609 aaKnown RBP13.03□□□□□ -0.32
SS18-225ENST00000585121 ADH5P11766 374 aa13.03□□□□□ -0.32
SS18-225ENST00000585121 HOXA6P31267 233 aa13.03□□□□□ -0.32
SS18-225ENST00000585121 FNTBP49356 437 aa13.03□□□□□ -0.32
SS18-225ENST00000585121 BCAT1P54687 386 aa13.03□□□□□ -0.32
SS18-225ENST00000585121 GAD2Q05329 585 aa13.03□□□□□ -0.32
SS18-225ENST00000585121 GOLGA7BQ2TAP0 167 aa13.03□□□□□ -0.32
SS18-225ENST00000585121 C10orf120Q5SQS8 335 aa13.03□□□□□ -0.32
SS18-225ENST00000585121 KLHDC10Q6PID8 442 aa13.03□□□□□ -0.32
SS18-225ENST00000585121 CCDC186Q7Z3E2 898 aa13.03□□□□□ -0.32
SS18-225ENST00000585121 PPM1KQ8N3J5 372 aa13.03□□□□□ -0.32
SS18-225ENST00000585121 ZFRQ96KR1 1074 aaKnown RBP13.03□□□□□ -0.32
SS18-225ENST00000585121 CYLDQ9NQC7 956 aa13.03□□□□□ -0.32
SS18-225ENST00000585121 RWDD2AQ9UIY3 292 aa13.03□□□□□ -0.32
SS18-225ENST00000585121 GMEB2Q9UKD1 530 aa13.03□□□□□ -0.32
SS18-225ENST00000585121 PCDHB4Q9Y5E5 795 aa13.03□□□□□ -0.32
SS18-225ENST00000585121 GVINP1Q7Z2Y8 2422 aa13.03□□□□□ -0.32
SS18-225ENST00000585121 K7ESF4 209 aa13.03□□□□□ -0.32
SS18-225ENST00000585121 TBX18O95935 607 aa13.03□□□□□ -0.32
SS18-225ENST00000585121 APODP05090 189 aa13.03□□□□□ -0.32
SS18-225ENST00000585121 VDRP11473 427 aa13.03□□□□□ -0.32
SS18-225ENST00000585121 EIF2DP41214 584 aaKnown RBP13.03□□□□□ -0.32
SS18-225ENST00000585121 PLA2G4AP47712 749 aa13.03□□□□□ -0.32
SS18-225ENST00000585121 MARSP56192 900 aaKnown RBP13.03□□□□□ -0.32
SS18-225ENST00000585121 KCNH2Q12809 1159 aa13.03□□□□□ -0.32
SS18-225ENST00000585121 TPD52L1Q16890 204 aaPredicted RBP13.03□□□□□ -0.32
SS18-225ENST00000585121 NAIF1Q69YI7 327 aaPredicted RBP13.03□□□□□ -0.32
SS18-225ENST00000585121 RHBDF2Q6PJF5 856 aa13.03□□□□□ -0.32
SS18-225ENST00000585121 TMEM270Q6UE05 265 aa13.03□□□□□ -0.32
SS18-225ENST00000585121 PRR23BQ6ZRT6 265 aa13.03□□□□□ -0.32
SS18-225ENST00000585121 NUDT18Q6ZVK8 323 aa13.03□□□□□ -0.32
SS18-225ENST00000585121 HTR3DQ70Z44 454 aa13.03□□□□□ -0.32
SS18-225ENST00000585121 CEP68Q76N32 757 aa13.03□□□□□ -0.32
SS18-225ENST00000585121 WDR5BQ86VZ2 330 aa13.03□□□□□ -0.32
SS18-225ENST00000585121 CREBRFQ8IUR6 639 aa13.03□□□□□ -0.32
SS18-225ENST00000585121 TRIM59Q8IWR1 403 aa13.03□□□□□ -0.32
SS18-225ENST00000585121 CAMKK1Q8N5S9 505 aa13.03□□□□□ -0.32
SS18-225ENST00000585121 GPR161Q8N6U8 529 aaKnown RBP13.03□□□□□ -0.32
SS18-225ENST00000585121 EHBP1Q8NDI1 1231 aa13.03□□□□□ -0.32
SS18-225ENST00000585121 RPLP0P6Q8NHW5 317 aa13.03□□□□□ -0.32
SS18-225ENST00000585121 PNKPQ96T60 521 aa13.03□□□□□ -0.32
SS18-225ENST00000585121 LRRC4Q9HBW1 653 aa13.03□□□□□ -0.32
SS18-225ENST00000585121 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.03□□□□□ -0.32
SS18-225ENST00000585121 CLIC5Q9NZA1 410 aa13.03□□□□□ -0.32
SS18-225ENST00000585121 TSPAN16Q9UKR8 245 aa13.03□□□□□ -0.32
SS18-225ENST00000585121 USP3Q9Y6I4 520 aa13.03□□□□□ -0.32
SS18-225ENST00000585121 PATJQ8NI35 1801 aa13.03□□□□□ -0.32
SS18-225ENST00000585121 KIF26AQ9ULI4 1882 aaPredicted RBP13.02□□□□□ -0.33
SS18-225ENST00000585121 XPO1O14980 1071 aaKnown RBP13.02□□□□□ -0.33
SS18-225ENST00000585121 PAEPP09466 180 aa13.02□□□□□ -0.33
SS18-225ENST00000585121 OPRD1P41143 372 aa13.02□□□□□ -0.33
SS18-225ENST00000585121 BST2Q10589 180 aaKnown RBP13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms