RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 PAFAH1B1P43034 410 aa14.32□□□□□ -0.12
CCDC40-209ENST00000573474 MARCKSL1P49006 195 aa14.32□□□□□ -0.12
CCDC40-209ENST00000573474 C15orf59Q2T9L4 293 aaPredicted RBP14.32□□□□□ -0.12
CCDC40-209ENST00000573474 SLC25A52Q3SY17 297 aa14.32□□□□□ -0.12
CCDC40-209ENST00000573474 CCDC181Q5TID7 509 aa14.32□□□□□ -0.12
CCDC40-209ENST00000573474 SDHAF4Q5VUM1 108 aa14.32□□□□□ -0.12
CCDC40-209ENST00000573474 DAB2IPQ5VWQ8 1189 aa14.32□□□□□ -0.12
CCDC40-209ENST00000573474 HFE2Q6ZVN8 426 aa14.32□□□□□ -0.12
CCDC40-209ENST00000573474 BEND5Q7L4P6 421 aa14.32□□□□□ -0.12
CCDC40-209ENST00000573474 BHLHA9Q7RTU4 235 aa14.32□□□□□ -0.12
CCDC40-209ENST00000573474 TMC7Q7Z402 723 aa14.32□□□□□ -0.12
CCDC40-209ENST00000573474 KATNAL2Q8IYT4 538 aa14.32□□□□□ -0.12
CCDC40-209ENST00000573474 ARFGAP1Q8N6T3 406 aa14.32□□□□□ -0.12
CCDC40-209ENST00000573474 MNS1Q8NEH6 495 aa14.32□□□□□ -0.12
CCDC40-209ENST00000573474 SPPL3Q8TCT6 385 aa14.32□□□□□ -0.12
CCDC40-209ENST00000573474 CENPIQ92674 756 aaPredicted RBP14.32□□□□□ -0.12
CCDC40-209ENST00000573474 CFAP57Q96MR6 1250 aa14.32□□□□□ -0.12
CCDC40-209ENST00000573474 GDF15Q99988 308 aa14.32□□□□□ -0.12
CCDC40-209ENST00000573474 C17orf80Q9BSJ5 609 aa14.32□□□□□ -0.12
CCDC40-209ENST00000573474 CARD6Q9BX69 1037 aa14.32□□□□□ -0.12
CCDC40-209ENST00000573474 RRN3Q9NYV6 651 aa14.32□□□□□ -0.12
CCDC40-209ENST00000573474 SCML2Q9UQR0 700 aa14.32□□□□□ -0.12
CCDC40-209ENST00000573474 CAPN9O14815 690 aa14.31□□□□□ -0.12
CCDC40-209ENST00000573474 TEX28O15482 410 aa14.31□□□□□ -0.12
CCDC40-209ENST00000573474 SOAT2O75908 522 aa14.31□□□□□ -0.12
CCDC40-209ENST00000573474 SEC24AO95486 1093 aa14.31□□□□□ -0.12
CCDC40-209ENST00000573474 KRT7P08729 469 aa14.31□□□□□ -0.12
CCDC40-209ENST00000573474 YWHAQP27348 245 aa14.31□□□□□ -0.12
CCDC40-209ENST00000573474 MIPP30301 263 aa14.31□□□□□ -0.12
CCDC40-209ENST00000573474 ELF1P32519 619 aa14.31□□□□□ -0.12
CCDC40-209ENST00000573474 CA8P35219 290 aa14.31□□□□□ -0.12
CCDC40-209ENST00000573474 ATP11AP98196 1134 aa14.31□□□□□ -0.12
CCDC40-209ENST00000573474 CLUL1Q15846 466 aa14.31□□□□□ -0.12
CCDC40-209ENST00000573474 DCAF6Q58WW2 860 aa14.31□□□□□ -0.12
CCDC40-209ENST00000573474 DCAF12L1Q5VU92 463 aa14.31□□□□□ -0.12
CCDC40-209ENST00000573474 BSPRYQ5W0U4 402 aa14.31□□□□□ -0.12
CCDC40-209ENST00000573474 FAM109BQ6ICB4 259 aaPredicted RBP14.31□□□□□ -0.12
CCDC40-209ENST00000573474 DENND5BQ6ZUT9 1274 aa14.31□□□□□ -0.12
CCDC40-209ENST00000573474 STRADAQ7RTN6 431 aa14.31□□□□□ -0.12
CCDC40-209ENST00000573474 POLNQ7Z5Q5 900 aa14.31□□□□□ -0.12
CCDC40-209ENST00000573474 ARHGAP18Q8N392 663 aa14.31□□□□□ -0.12
CCDC40-209ENST00000573474 RASGEF1CQ8N431 466 aa14.31□□□□□ -0.12
CCDC40-209ENST00000573474 ACTRT1Q8TDG2 376 aa14.31□□□□□ -0.12
CCDC40-209ENST00000573474 FAM172AQ8WUF8 416 aa14.31□□□□□ -0.12
CCDC40-209ENST00000573474 POF1BQ8WVV4 589 aa14.31□□□□□ -0.12
CCDC40-209ENST00000573474 NT5C3BQ969T7 300 aa14.31□□□□□ -0.12
CCDC40-209ENST00000573474 TGS1Q96RS0 853 aaKnown RBP14.31□□□□□ -0.12
CCDC40-209ENST00000573474 C11orf84Q9BUA3 381 aaPredicted RBP14.31□□□□□ -0.12
CCDC40-209ENST00000573474 EMILIN2Q9BXX0 1053 aa14.31□□□□□ -0.12
CCDC40-209ENST00000573474 ALG13Q9NP73 1137 aaKnown RBP14.31□□□□□ -0.12
CCDC40-209ENST00000573474 DDX56Q9NY93 547 aaKnown RBP14.31□□□□□ -0.12
CCDC40-209ENST00000573474 TTC7AQ9ULT0 858 aaPredicted RBP14.31□□□□□ -0.12
CCDC40-209ENST00000573474 STAP1Q9ULZ2 295 aa14.31□□□□□ -0.12
CCDC40-209ENST00000573474 IRAK3Q9Y616 596 aa14.31□□□□□ -0.12
CCDC40-209ENST00000573474 HSFX4A0A1B0GTS1 333 aaPredicted RBP14.3□□□□□ -0.12
CCDC40-209ENST00000573474 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP14.3□□□□□ -0.12
CCDC40-209ENST00000573474 HSFX3A0A1B0GWH4 333 aaPredicted RBP14.3□□□□□ -0.12
CCDC40-209ENST00000573474 FAM92AA1XBS5 289 aa14.3□□□□□ -0.12
CCDC40-209ENST00000573474 SLC38A8A6NNN8 435 aa14.3□□□□□ -0.12
CCDC40-209ENST00000573474 ENDOD1O94919 500 aa14.3□□□□□ -0.12
CCDC40-209ENST00000573474 ARHGEF15O94989 841 aa14.3□□□□□ -0.12
CCDC40-209ENST00000573474 TRUB2O95900 331 aaKnown RBP14.3□□□□□ -0.12
CCDC40-209ENST00000573474 FYNP06241 537 aa14.3□□□□□ -0.12
CCDC40-209ENST00000573474 CA3P07451 260 aa14.3□□□□□ -0.12
CCDC40-209ENST00000573474 CNPP09543 421 aaKnown RBP14.3□□□□□ -0.12
CCDC40-209ENST00000573474 PYGMP11217 842 aa14.3□□□□□ -0.12
CCDC40-209ENST00000573474 NCAM1P13591 858 aa14.3□□□□□ -0.12
CCDC40-209ENST00000573474 TCF4P15884 667 aa14.3□□□□□ -0.12
CCDC40-209ENST00000573474 SULT1E1P49888 294 aa14.3□□□□□ -0.12
CCDC40-209ENST00000573474 ERVK-21P61565 698 aa14.3□□□□□ -0.12
CCDC40-209ENST00000573474 YWHAGP61981 247 aaKnown RBP eCLIP14.3□□□□□ -0.12
CCDC40-209ENST00000573474 SLC25A11Q02978 314 aaKnown RBP14.3□□□□□ -0.12
CCDC40-209ENST00000573474 IFRD2Q12894 506 aaPredicted RBP14.3□□□□□ -0.12
CCDC40-209ENST00000573474 SMC1AQ14683 1233 aaKnown RBP14.3□□□□□ -0.12
CCDC40-209ENST00000573474 CDO1Q16878 200 aa14.3□□□□□ -0.12
CCDC40-209ENST00000573474 SH3PXD2AQ5TCZ1 1133 aa14.3□□□□□ -0.12
CCDC40-209ENST00000573474 SEL1L2Q5TEA6 688 aa14.3□□□□□ -0.12
CCDC40-209ENST00000573474 ZNF572Q7Z3I7 529 aaPredicted RBP14.3□□□□□ -0.12
CCDC40-209ENST00000573474 MON1AQ86VX9 555 aa14.3□□□□□ -0.12
CCDC40-209ENST00000573474 TCEAL8Q8IYN2 117 aa14.3□□□□□ -0.12
CCDC40-209ENST00000573474 RCOR2Q8IZ40 523 aa14.3□□□□□ -0.12
CCDC40-209ENST00000573474 EXD1Q8NHP7 514 aa14.3□□□□□ -0.12
CCDC40-209ENST00000573474 GPR152Q8TDT2 470 aa14.3□□□□□ -0.12
CCDC40-209ENST00000573474 MS4A14Q96JA4 679 aa14.3□□□□□ -0.12
CCDC40-209ENST00000573474 KLHL5Q96PQ7 755 aa14.3□□□□□ -0.12
CCDC40-209ENST00000573474 TBCBQ99426 244 aa14.3□□□□□ -0.12
CCDC40-209ENST00000573474 NAP1L3Q99457 506 aaPredicted RBP14.3□□□□□ -0.12
CCDC40-209ENST00000573474 NPY6RQ99463 290 aa14.3□□□□□ -0.12
CCDC40-209ENST00000573474 TCF25Q9BQ70 676 aa14.3□□□□□ -0.12
CCDC40-209ENST00000573474 CYP4F11Q9HBI6 524 aa14.3□□□□□ -0.12
CCDC40-209ENST00000573474 NGRNQ9NPE2 291 aaKnown RBP14.3□□□□□ -0.12
CCDC40-209ENST00000573474 ENTPD7Q9NQZ7 604 aa14.3□□□□□ -0.12
CCDC40-209ENST00000573474 TLR9Q9NR96 1032 aa14.3□□□□□ -0.12
CCDC40-209ENST00000573474 ABCC13Q9NSE7 274 aa14.3□□□□□ -0.12
CCDC40-209ENST00000573474 EHD2Q9NZN4 543 aa14.3□□□□□ -0.12
CCDC40-209ENST00000573474 USP18Q9UMW8 372 aa14.3□□□□□ -0.12
CCDC40-209ENST00000573474 NAALADL1Q9UQQ1 740 aa14.3□□□□□ -0.12
CCDC40-209ENST00000573474 CTAGE15A4D2H0 777 aa14.29□□□□□ -0.12
CCDC40-209ENST00000573474 H0YGN5 161 aa14.29□□□□□ -0.12
CCDC40-209ENST00000573474 PGRMC1O00264 195 aaKnown RBP14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms