RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 SLC25A41Q8N5S1 370 aa17.79■□□□□ 0.44
VPS53-215ENST00000573028 PPFIBP2Q8ND30 876 aa17.79■□□□□ 0.44
VPS53-215ENST00000573028 CFAP61Q8NHU2 1237 aa17.79■□□□□ 0.44
VPS53-215ENST00000573028 ANKRD27Q96NW4 1050 aa17.79■□□□□ 0.44
VPS53-215ENST00000573028 PRPSAP2O60256 369 aa17.78■□□□□ 0.44
VPS53-215ENST00000573028 ATG7O95352 703 aa17.78■□□□□ 0.44
VPS53-215ENST00000573028 ZBED1O96006 694 aa17.78■□□□□ 0.44
VPS53-215ENST00000573028 NFICP08651 508 aa17.78■□□□□ 0.44
VPS53-215ENST00000573028 MRPS35P82673 323 aaKnown RBP17.78■□□□□ 0.44
VPS53-215ENST00000573028 TREML1Q86YW5 311 aa17.78■□□□□ 0.44
VPS53-215ENST00000573028 NUDCD3Q8IVD9 361 aa17.78■□□□□ 0.44
VPS53-215ENST00000573028 SMC1BQ8NDV3 1235 aa17.78■□□□□ 0.44
VPS53-215ENST00000573028 CMASQ8NFW8 434 aaPredicted RBP17.78■□□□□ 0.44
VPS53-215ENST00000573028 RXFP2Q8WXD0 754 aa17.78■□□□□ 0.44
VPS53-215ENST00000573028 THTPAQ9BU02 230 aa17.78■□□□□ 0.44
VPS53-215ENST00000573028 AS3MTQ9HBK9 375 aa17.78■□□□□ 0.44
VPS53-215ENST00000573028 EFR3BQ9Y2G0 817 aa17.78■□□□□ 0.44
VPS53-215ENST00000573028 ARID2Q68CP9 1835 aa17.78■□□□□ 0.44
VPS53-215ENST00000573028 LIN7AO14910 233 aaPredicted RBP17.78■□□□□ 0.44
VPS53-215ENST00000573028 EFNA5P52803 228 aa17.78■□□□□ 0.44
VPS53-215ENST00000573028 AQP5P55064 265 aa17.78■□□□□ 0.44
VPS53-215ENST00000573028 PTPN11Q06124 597 aaPredicted RBP17.78■□□□□ 0.44
VPS53-215ENST00000573028 ZC3H12AQ5D1E8 599 aaKnown RBP17.78■□□□□ 0.44
VPS53-215ENST00000573028 TTC39BQ5VTQ0 682 aaPredicted RBP17.78■□□□□ 0.44
VPS53-215ENST00000573028 PPP1R14CQ8TAE6 165 aa17.78■□□□□ 0.44
VPS53-215ENST00000573028 E2F7Q96AV8 911 aa17.78■□□□□ 0.44
VPS53-215ENST00000573028 TTC1Q99614 292 aa17.78■□□□□ 0.44
VPS53-215ENST00000573028 TUBB6Q9BUF5 446 aa17.78■□□□□ 0.44
VPS53-215ENST00000573028 NIFKQ9BYG3 293 aaKnown RBP17.78■□□□□ 0.44
VPS53-215ENST00000573028 ASNSD1Q9NWL6 643 aa17.78■□□□□ 0.44
VPS53-215ENST00000573028 BRWD3Q6RI45 1802 aa17.78■□□□□ 0.44
VPS53-215ENST00000573028 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP17.77■□□□□ 0.44
VPS53-215ENST00000573028 MYCNP04198 464 aaPredicted RBP17.77■□□□□ 0.44
VPS53-215ENST00000573028 SNRPAP09012 282 aaKnown RBP17.77■□□□□ 0.44
VPS53-215ENST00000573028 ACADSP16219 412 aa17.77■□□□□ 0.44
VPS53-215ENST00000573028 YWHAZP63104 245 aaKnown RBP17.77■□□□□ 0.44
VPS53-215ENST00000573028 SLC34A1Q06495 639 aa17.77■□□□□ 0.44
VPS53-215ENST00000573028 ELOVL4Q9GZR5 314 aa17.77■□□□□ 0.44
VPS53-215ENST00000573028 HMGCRP04035 888 aa17.77■□□□□ 0.44
VPS53-215ENST00000573028 DHRS4L1P0CG22 281 aa17.77■□□□□ 0.44
VPS53-215ENST00000573028 GRIK3Q13003 919 aa17.77■□□□□ 0.44
VPS53-215ENST00000573028 ATF7IP2Q5U623 682 aa17.77■□□□□ 0.44
VPS53-215ENST00000573028 RNF220Q5VTB9 566 aa17.77■□□□□ 0.44
VPS53-215ENST00000573028 MICALL2Q8IY33 904 aa17.77■□□□□ 0.44
VPS53-215ENST00000573028 NDUFAF2Q8N183 169 aa17.77■□□□□ 0.44
VPS53-215ENST00000573028 NR2E3Q9Y5X4 410 aa17.77■□□□□ 0.44
VPS53-215ENST00000573028 FARP2O94887 1054 aaPredicted RBP17.77■□□□□ 0.43
VPS53-215ENST00000573028 SKIP12755 728 aa17.77■□□□□ 0.43
VPS53-215ENST00000573028 STIP1P31948 543 aaKnown RBP17.77■□□□□ 0.43
VPS53-215ENST00000573028 BCAR1P56945 870 aa17.77■□□□□ 0.43
VPS53-215ENST00000573028 IGBP1P78318 339 aa17.77■□□□□ 0.43
VPS53-215ENST00000573028 SLC18A2Q05940 514 aa17.77■□□□□ 0.43
VPS53-215ENST00000573028 NOMO1Q15155 1222 aa17.77■□□□□ 0.43
VPS53-215ENST00000573028 TRMT10BQ6PF06 316 aaKnown RBP17.77■□□□□ 0.43
VPS53-215ENST00000573028 CHSY1Q86X52 802 aa17.77■□□□□ 0.43
VPS53-215ENST00000573028 SLC4A11Q8NBS3 891 aa17.77■□□□□ 0.43
VPS53-215ENST00000573028 RPF1Q9H9Y2 349 aaKnown RBP17.77■□□□□ 0.43
VPS53-215ENST00000573028 SPATS2LQ9NUQ6 558 aaKnown RBP17.77■□□□□ 0.43
VPS53-215ENST00000573028 PIH1D1Q9NWS0 290 aaKnown RBP17.77■□□□□ 0.43
VPS53-215ENST00000573028 MAFO75444 373 aaPredicted RBP17.76■□□□□ 0.43
VPS53-215ENST00000573028 OSBPP22059 807 aa17.76■□□□□ 0.43
VPS53-215ENST00000573028 KCNJ11Q14654 390 aa17.76■□□□□ 0.43
VPS53-215ENST00000573028 FAM160B1Q5W0V3 765 aa17.76■□□□□ 0.43
VPS53-215ENST00000573028 RBM15BQ8NDT2 890 aaKnown RBP17.76■□□□□ 0.43
VPS53-215ENST00000573028 ZNF483Q8TF39 744 aaPredicted RBP17.76■□□□□ 0.43
VPS53-215ENST00000573028 TSC22D3Q99576 134 aa17.76■□□□□ 0.43
VPS53-215ENST00000573028 PIDD1Q9HB75 910 aa17.76■□□□□ 0.43
VPS53-215ENST00000573028 MEI4A8MW99 385 aa17.76■□□□□ 0.43
VPS53-215ENST00000573028 RARBP10826 455 aa17.76■□□□□ 0.43
VPS53-215ENST00000573028 CLCN3P51790 818 aa17.76■□□□□ 0.43
VPS53-215ENST00000573028 TARBP2Q15633 366 aaKnown RBP17.76■□□□□ 0.43
VPS53-215ENST00000573028 FRMD8P1Q9BZ68 369 aaPredicted RBP17.76■□□□□ 0.43
VPS53-215ENST00000573028 SMYD2Q9NRG4 433 aa17.76■□□□□ 0.43
VPS53-215ENST00000573028 PPP1R1BQ9UD71 204 aaPredicted RBP17.76■□□□□ 0.43
VPS53-215ENST00000573028 TTLL3Q9Y4R7 772 aa17.76■□□□□ 0.43
VPS53-215ENST00000573028 SPDYE16A6NNV3 312 aaPredicted RBP17.76■□□□□ 0.43
VPS53-215ENST00000573028 UBTFL6P0CB48 400 aaPredicted RBP17.76■□□□□ 0.43
VPS53-215ENST00000573028 GPD1P21695 349 aa17.76■□□□□ 0.43
VPS53-215ENST00000573028 SPDYAQ5MJ70 313 aa17.76■□□□□ 0.43
VPS53-215ENST00000573028 WDR78Q5VTH9 848 aa17.76■□□□□ 0.43
VPS53-215ENST00000573028 BSPRYQ5W0U4 402 aa17.76■□□□□ 0.43
VPS53-215ENST00000573028 MPZL3Q6UWV2 235 aa17.76■□□□□ 0.43
VPS53-215ENST00000573028 C1orf127Q8N9H9 656 aa17.76■□□□□ 0.43
VPS53-215ENST00000573028 FNIP1Q8TF40 1166 aa17.76■□□□□ 0.43
VPS53-215ENST00000573028 DDX50Q9BQ39 737 aaKnown RBP17.76■□□□□ 0.43
VPS53-215ENST00000573028 SHCBP1LQ9BZQ2 653 aa17.76■□□□□ 0.43
VPS53-215ENST00000573028 WDR35Q9P2L0 1181 aa17.76■□□□□ 0.43
VPS53-215ENST00000573028 SIX4Q9UIU6 781 aa17.76■□□□□ 0.43
VPS53-215ENST00000573028 NOP56O00567 594 aaKnown RBP17.75■□□□□ 0.43
VPS53-215ENST00000573028 PPP1R12AO14974 1030 aaPredicted RBP17.75■□□□□ 0.43
VPS53-215ENST00000573028 MAP3K7O43318 606 aa17.75■□□□□ 0.43
VPS53-215ENST00000573028 CSH1P0DML2 217 aa17.75■□□□□ 0.43
VPS53-215ENST00000573028 CSH2P0DML3 217 aa17.75■□□□□ 0.43
VPS53-215ENST00000573028 IRX1P78414 480 aaPredicted RBP17.75■□□□□ 0.43
VPS53-215ENST00000573028 TFDP2Q14188 446 aa17.75■□□□□ 0.43
VPS53-215ENST00000573028 CES4AQ5XG92 561 aa17.75■□□□□ 0.43
VPS53-215ENST00000573028 TRNP1Q6NT89 227 aa17.75■□□□□ 0.43
VPS53-215ENST00000573028 CASC4Q6P4E1 433 aa17.75■□□□□ 0.43
VPS53-215ENST00000573028 NCAPG2Q86XI2 1143 aa17.75■□□□□ 0.43
VPS53-215ENST00000573028 C12orf29Q8N999 325 aa17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms