RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 FNDC3AQ9Y2H6 1198 aaKnown RBP17.25■□□□□ 0.35
CLK3-223ENST00000568488 STARD13Q9Y3M8 1113 aa17.25■□□□□ 0.35
CLK3-223ENST00000568488 GOLGA4Q13439 2230 aaKnown RBP17.25■□□□□ 0.35
CLK3-223ENST00000568488 VWA3AA6NCI4 1184 aa17.24■□□□□ 0.35
CLK3-223ENST00000568488 FLRT2O43155 660 aa17.24■□□□□ 0.35
CLK3-223ENST00000568488 OAS1P00973 400 aaKnown RBP17.24■□□□□ 0.35
CLK3-223ENST00000568488 ZNF883P0CG24 379 aa17.24■□□□□ 0.35
CLK3-223ENST00000568488 NCAM1P13591 858 aa17.24■□□□□ 0.35
CLK3-223ENST00000568488 ABCD1P33897 745 aa17.24■□□□□ 0.35
CLK3-223ENST00000568488 ZNF131P52739 623 aa17.24■□□□□ 0.35
CLK3-223ENST00000568488 POU5F1Q01860 360 aaKnown RBP17.24■□□□□ 0.35
CLK3-223ENST00000568488 LARP1BQ659C4 914 aaKnown RBP17.24■□□□□ 0.35
CLK3-223ENST00000568488 GRAMD4Q6IC98 578 aa17.24■□□□□ 0.35
CLK3-223ENST00000568488 IL27RAQ6UWB1 636 aa17.24■□□□□ 0.35
CLK3-223ENST00000568488 LRRC69Q6ZNQ3 347 aa17.24■□□□□ 0.35
CLK3-223ENST00000568488 BAHD1Q8TBE0 780 aaPredicted RBP17.24■□□□□ 0.35
CLK3-223ENST00000568488 DNASE2BQ8WZ79 361 aa17.24■□□□□ 0.35
CLK3-223ENST00000568488 OTUB2Q96DC9 234 aa17.24■□□□□ 0.35
CLK3-223ENST00000568488 CEP295NLQ96MC4 621 aa17.24■□□□□ 0.35
CLK3-223ENST00000568488 SLITRK1Q96PX8 696 aa17.24■□□□□ 0.35
CLK3-223ENST00000568488 CRTAC1Q9NQ79 661 aa17.24■□□□□ 0.35
CLK3-223ENST00000568488 SPHK2Q9NRA0 654 aa17.24■□□□□ 0.35
CLK3-223ENST00000568488 DNAJC17Q9NVM6 304 aaKnown RBP17.24■□□□□ 0.35
CLK3-223ENST00000568488 CDH9Q9ULB4 789 aa17.24■□□□□ 0.35
CLK3-223ENST00000568488 R3HCC1Q9Y3T6 440 aaKnown RBP17.24■□□□□ 0.35
CLK3-223ENST00000568488 STYXL1Q9Y6J8 313 aa17.24■□□□□ 0.35
CLK3-223ENST00000568488 F8VP50 259 aa17.23■□□□□ 0.35
CLK3-223ENST00000568488 TRIM66O15016 1216 aa17.23■□□□□ 0.35
CLK3-223ENST00000568488 HOXC11O43248 304 aaPredicted RBP17.23■□□□□ 0.35
CLK3-223ENST00000568488 TBCAO75347 108 aaKnown RBP17.23■□□□□ 0.35
CLK3-223ENST00000568488 DKK1O94907 266 aa17.23■□□□□ 0.35
CLK3-223ENST00000568488 RBP5P82980 135 aa17.23■□□□□ 0.35
CLK3-223ENST00000568488 SUZ12Q15022 739 aaKnown RBP17.23■□□□□ 0.35
CLK3-223ENST00000568488 POSTNQ15063 836 aa17.23■□□□□ 0.35
CLK3-223ENST00000568488 MAPRE1Q15691 268 aaKnown RBP17.23■□□□□ 0.35
CLK3-223ENST00000568488 TMEM119Q4V9L6 283 aa17.23■□□□□ 0.35
CLK3-223ENST00000568488 HS2ST1Q7LGA3 356 aa17.23■□□□□ 0.35
CLK3-223ENST00000568488 BBS7Q8IWZ6 715 aa17.23■□□□□ 0.35
CLK3-223ENST00000568488 ZNF843Q8N446 348 aa17.23■□□□□ 0.35
CLK3-223ENST00000568488 NOC3LQ8WTT2 800 aaKnown RBP17.23■□□□□ 0.35
CLK3-223ENST00000568488 SCFD1Q8WVM8 642 aa17.23■□□□□ 0.35
CLK3-223ENST00000568488 PRORYQ9H606 182 aa17.23■□□□□ 0.35
CLK3-223ENST00000568488 CD248Q9HCU0 757 aa17.23■□□□□ 0.35
CLK3-223ENST00000568488 EIF4ENIF1Q9NRA8 985 aaKnown RBP17.23■□□□□ 0.35
CLK3-223ENST00000568488 TENM4Q6N022 2769 aa17.23■□□□□ 0.35
CLK3-223ENST00000568488 CAPN9O14815 690 aa17.22■□□□□ 0.35
CLK3-223ENST00000568488 BCAT2O15382 392 aaPredicted RBP17.22■□□□□ 0.35
CLK3-223ENST00000568488 IRF1P10914 325 aa17.22■□□□□ 0.35
CLK3-223ENST00000568488 HLA-EP13747 358 aa17.22■□□□□ 0.35
CLK3-223ENST00000568488 ADSSP30520 456 aa17.22■□□□□ 0.35
CLK3-223ENST00000568488 NOP14P78316 857 aaKnown RBP17.22■□□□□ 0.35
CLK3-223ENST00000568488 DCAF12L1Q5VU92 463 aa17.22■□□□□ 0.35
CLK3-223ENST00000568488 SAAL1Q96ER3 474 aa17.22■□□□□ 0.35
CLK3-223ENST00000568488 PCED1BQ96HM7 432 aa17.22■□□□□ 0.35
CLK3-223ENST00000568488 FIZ1Q96SL8 496 aa17.22■□□□□ 0.35
CLK3-223ENST00000568488 GABRG3Q99928 467 aa17.22■□□□□ 0.35
CLK3-223ENST00000568488 WSB2Q9NYS7 404 aaPredicted RBP17.22■□□□□ 0.35
CLK3-223ENST00000568488 CHORDC1Q9UHD1 332 aaPredicted RBP17.22■□□□□ 0.35
CLK3-223ENST00000568488 ITGA11Q9UKX5 1188 aa17.22■□□□□ 0.35
CLK3-223ENST00000568488 BTBD3Q9Y2F9 522 aa17.22■□□□□ 0.35
CLK3-223ENST00000568488 A0A1B0GVT2 93 aa17.21■□□□□ 0.35
CLK3-223ENST00000568488 WASH3PC4AMC7 463 aa17.21■□□□□ 0.35
CLK3-223ENST00000568488 J3QKU1 62 aa17.21■□□□□ 0.35
CLK3-223ENST00000568488 PLK4O00444 970 aa17.21■□□□□ 0.35
CLK3-223ENST00000568488 COCHO43405 550 aa17.21■□□□□ 0.35
CLK3-223ENST00000568488 BNC1Q01954 994 aa17.21■□□□□ 0.35
CLK3-223ENST00000568488 MCM6Q14566 821 aa17.21■□□□□ 0.35
CLK3-223ENST00000568488 MDH1BQ5I0G3 518 aa17.21■□□□□ 0.35
CLK3-223ENST00000568488 DHRS13Q6UX07 377 aa17.21■□□□□ 0.35
CLK3-223ENST00000568488 DBX2Q6ZNG2 339 aa17.21■□□□□ 0.35
CLK3-223ENST00000568488 ZSWIM2Q8NEG5 633 aa17.21■□□□□ 0.35
CLK3-223ENST00000568488 C8orf48Q96LL4 319 aa17.21■□□□□ 0.35
CLK3-223ENST00000568488 FCRL3Q96P31 734 aaPredicted RBP17.21■□□□□ 0.35
CLK3-223ENST00000568488 XPO6Q96QU8 1125 aaKnown RBP17.21■□□□□ 0.35
CLK3-223ENST00000568488 RBAKQ9NYW8 714 aaPredicted RBP17.21■□□□□ 0.35
CLK3-223ENST00000568488 PCDHGB2Q9Y5G2 931 aa17.21■□□□□ 0.35
CLK3-223ENST00000568488 PRRT4C9JH25 899 aa17.2■□□□□ 0.34
CLK3-223ENST00000568488 NEDD8-MDP1E9PL57 170 aa17.2■□□□□ 0.34
CLK3-223ENST00000568488 TNFSF14O43557 240 aa17.2■□□□□ 0.34
CLK3-223ENST00000568488 TMEM191BP0C7N4 346 aa17.2■□□□□ 0.34
CLK3-223ENST00000568488 YWHAQP27348 245 aa17.2■□□□□ 0.34
CLK3-223ENST00000568488 SEMG2Q02383 582 aa17.2■□□□□ 0.34
CLK3-223ENST00000568488 MYO1EQ12965 1108 aa17.2■□□□□ 0.34
CLK3-223ENST00000568488 SMAD1Q15797 465 aaKnown RBP17.2■□□□□ 0.34
CLK3-223ENST00000568488 DPH6Q7L8W6 267 aa17.2■□□□□ 0.34
CLK3-223ENST00000568488 BRSK2Q8IWQ3 736 aa17.2■□□□□ 0.34
CLK3-223ENST00000568488 LSM14AQ8ND56 463 aaKnown RBP17.2■□□□□ 0.34
CLK3-223ENST00000568488 CADM4Q8NFZ8 388 aa17.2■□□□□ 0.34
CLK3-223ENST00000568488 CXorf38Q8TB03 319 aa17.2■□□□□ 0.34
CLK3-223ENST00000568488 MYCBPAPQ8TBZ2 947 aa17.2■□□□□ 0.34
CLK3-223ENST00000568488 KBTBD7Q8WVZ9 684 aa17.2■□□□□ 0.34
CLK3-223ENST00000568488 FBXO32Q969P5 355 aa17.2■□□□□ 0.34
CLK3-223ENST00000568488 WBP2Q969T9 261 aa17.2■□□□□ 0.34
CLK3-223ENST00000568488 CALML4Q96GE6 196 aa17.2■□□□□ 0.34
CLK3-223ENST00000568488 ZFRQ96KR1 1074 aaKnown RBP17.2■□□□□ 0.34
CLK3-223ENST00000568488 MMS19Q96T76 1030 aa17.2■□□□□ 0.34
CLK3-223ENST00000568488 LLPHQ9BRT6 129 aaKnown RBP17.2■□□□□ 0.34
CLK3-223ENST00000568488 MTMR12Q9C0I1 747 aa17.2■□□□□ 0.34
CLK3-223ENST00000568488 EIF2B4Q9UI10 523 aaKnown RBP17.2■□□□□ 0.34
CLK3-223ENST00000568488 SIX4Q9UIU6 781 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms