RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 CDHR1Q96JP9 859 aa13.74□□□□□ -0.21
CLN3-210ENST00000563874 TTC1Q99614 292 aa13.74□□□□□ -0.21
CLN3-210ENST00000563874 PHACTR1Q9C0D0 580 aa13.74□□□□□ -0.21
CLN3-210ENST00000563874 MYOZ2Q9NPC6 264 aa13.74□□□□□ -0.21
CLN3-210ENST00000563874 SMYD2Q9NRG4 433 aa13.74□□□□□ -0.21
CLN3-210ENST00000563874 PCMTD2Q9NV79 361 aa13.74□□□□□ -0.21
CLN3-210ENST00000563874 GPATCH2LQ9NWQ4 482 aa13.74□□□□□ -0.21
CLN3-210ENST00000563874 ZC3H7BQ9UGR2 993 aaKnown RBP13.74□□□□□ -0.21
CLN3-210ENST00000563874 TTLL3Q9Y4R7 772 aa13.74□□□□□ -0.21
CLN3-210ENST00000563874 MEI4A8MW99 385 aa13.74□□□□□ -0.21
CLN3-210ENST00000563874 MSCO60682 206 aa13.74□□□□□ -0.21
CLN3-210ENST00000563874 TOM1L1O75674 476 aa13.74□□□□□ -0.21
CLN3-210ENST00000563874 USP1O94782 785 aa13.74□□□□□ -0.21
CLN3-210ENST00000563874 BAG2O95816 211 aa13.74□□□□□ -0.21
CLN3-210ENST00000563874 TRUB2O95900 331 aaKnown RBP13.74□□□□□ -0.21
CLN3-210ENST00000563874 ZCCHC18P0CG32 403 aa13.74□□□□□ -0.21
CLN3-210ENST00000563874 YWHAZP63104 245 aaKnown RBP13.74□□□□□ -0.21
CLN3-210ENST00000563874 AP1B1Q10567 949 aa13.74□□□□□ -0.21
CLN3-210ENST00000563874 SMAD1Q15797 465 aaKnown RBP13.74□□□□□ -0.21
CLN3-210ENST00000563874 TAZQ16635 292 aa13.74□□□□□ -0.21
CLN3-210ENST00000563874 MROH9Q5TGP6 573 aa13.74□□□□□ -0.21
CLN3-210ENST00000563874 TTC39BQ5VTQ0 682 aaPredicted RBP13.74□□□□□ -0.21
CLN3-210ENST00000563874 CCNJLQ8IV13 435 aa13.74□□□□□ -0.21
CLN3-210ENST00000563874 FLAD1Q8NFF5 587 aa13.74□□□□□ -0.21
CLN3-210ENST00000563874 CMASQ8NFW8 434 aaPredicted RBP13.74□□□□□ -0.21
CLN3-210ENST00000563874 UBA3Q8TBC4 463 aa13.74□□□□□ -0.21
CLN3-210ENST00000563874 CCDC110Q8TBZ0 833 aa13.74□□□□□ -0.21
CLN3-210ENST00000563874 E2F7Q96AV8 911 aa13.74□□□□□ -0.21
CLN3-210ENST00000563874 PIWIL1Q96J94 861 aaKnown RBP13.74□□□□□ -0.21
CLN3-210ENST00000563874 RILPQ96NA2 401 aa13.74□□□□□ -0.21
CLN3-210ENST00000563874 RGPD3A6NKT7 1758 aaPredicted RBP13.73□□□□□ -0.21
CLN3-210ENST00000563874 RGPD4Q7Z3J3 1758 aa13.73□□□□□ -0.21
CLN3-210ENST00000563874 FESP07332 822 aa13.73□□□□□ -0.21
CLN3-210ENST00000563874 GJB1P08034 283 aa13.73□□□□□ -0.21
CLN3-210ENST00000563874 PAPOLAP51003 745 aaKnown RBP13.73□□□□□ -0.21
CLN3-210ENST00000563874 CACNA2D1P54289 1103 aa13.73□□□□□ -0.21
CLN3-210ENST00000563874 CXCL9Q07325 125 aa13.73□□□□□ -0.21
CLN3-210ENST00000563874 UBAP2LQ14157 1087 aaKnown RBP13.73□□□□□ -0.21
CLN3-210ENST00000563874 FOXB2Q5VYV0 432 aa13.73□□□□□ -0.21
CLN3-210ENST00000563874 RIPOR1Q6ZS17 1223 aa13.73□□□□□ -0.21
CLN3-210ENST00000563874 EEPD1Q7L9B9 569 aa13.73□□□□□ -0.21
CLN3-210ENST00000563874 TMEM192Q8IY95 271 aa13.73□□□□□ -0.21
CLN3-210ENST00000563874 TTLL6Q8N841 843 aa13.73□□□□□ -0.21
CLN3-210ENST00000563874 RNF149Q8NC42 400 aa13.73□□□□□ -0.21
CLN3-210ENST00000563874 EBF4Q9BQW3 602 aa13.73□□□□□ -0.21
CLN3-210ENST00000563874 PLLPQ9Y342 182 aa13.73□□□□□ -0.21
CLN3-210ENST00000563874 HOXC6P09630 235 aa13.73□□□□□ -0.21
CLN3-210ENST00000563874 POLE2P56282 527 aa13.73□□□□□ -0.21
CLN3-210ENST00000563874 SCYL2Q6P3W7 929 aa13.73□□□□□ -0.21
CLN3-210ENST00000563874 TRMT10BQ6PF06 316 aaKnown RBP13.73□□□□□ -0.21
CLN3-210ENST00000563874 NUDCD3Q8IVD9 361 aa13.73□□□□□ -0.21
CLN3-210ENST00000563874 REPS2Q8NFH8 660 aa13.73□□□□□ -0.21
CLN3-210ENST00000563874 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.73□□□□□ -0.21
CLN3-210ENST00000563874 PCYT2Q99447 389 aa13.73□□□□□ -0.21
CLN3-210ENST00000563874 ZNF184Q99676 751 aaPredicted RBP13.73□□□□□ -0.21
CLN3-210ENST00000563874 MRPL4Q9BYD3 311 aaKnown RBP13.73□□□□□ -0.21
CLN3-210ENST00000563874 SDCBP2Q9H190 292 aa13.73□□□□□ -0.21
CLN3-210ENST00000563874 SMYD3Q9H7B4 428 aa13.73□□□□□ -0.21
CLN3-210ENST00000563874 PLAC1Q9HBJ0 212 aa13.73□□□□□ -0.21
CLN3-210ENST00000563874 ASB3Q9Y575 518 aa13.73□□□□□ -0.21
CLN3-210ENST00000563874 MAD1L1Q9Y6D9 718 aa13.73□□□□□ -0.21
CLN3-210ENST00000563874 CAPN14A8MX76 684 aa13.72□□□□□ -0.21
CLN3-210ENST00000563874 PRR5-ARHGAP8B1AHC4 643 aa13.72□□□□□ -0.21
CLN3-210ENST00000563874 F5H423 210 aaPredicted RBP13.72□□□□□ -0.21
CLN3-210ENST00000563874 M0QYV0 167 aa13.72□□□□□ -0.21
CLN3-210ENST00000563874 ABLIM1O14639 778 aa13.72□□□□□ -0.21
CLN3-210ENST00000563874 KRT37O76014 449 aa13.72□□□□□ -0.21
CLN3-210ENST00000563874 C1QAP02745 245 aa13.72□□□□□ -0.21
CLN3-210ENST00000563874 SNRPAP09012 282 aaKnown RBP13.72□□□□□ -0.21
CLN3-210ENST00000563874 CSH1P0DML2 217 aa13.72□□□□□ -0.21
CLN3-210ENST00000563874 CSH2P0DML3 217 aa13.72□□□□□ -0.21
CLN3-210ENST00000563874 RBL1P28749 1068 aa13.72□□□□□ -0.21
CLN3-210ENST00000563874 BACE1P56817 501 aa13.72□□□□□ -0.21
CLN3-210ENST00000563874 SARNPP82979 210 aaKnown RBP13.72□□□□□ -0.21
CLN3-210ENST00000563874 ARHGAP8P85298 464 aa13.72□□□□□ -0.21
CLN3-210ENST00000563874 NOMO1Q15155 1222 aa13.72□□□□□ -0.21
CLN3-210ENST00000563874 SCUBE1Q8IWY4 988 aa13.72□□□□□ -0.21
CLN3-210ENST00000563874 PANX3Q96QZ0 392 aa13.72□□□□□ -0.21
CLN3-210ENST00000563874 SH3GL3Q99963 347 aa13.72□□□□□ -0.21
CLN3-210ENST00000563874 ADPGKQ9BRR6 497 aa13.72□□□□□ -0.21
CLN3-210ENST00000563874 FRMD8P1Q9BZ68 369 aaPredicted RBP13.72□□□□□ -0.21
CLN3-210ENST00000563874 MMADHCQ9H3L0 296 aaPredicted RBP13.72□□□□□ -0.21
CLN3-210ENST00000563874 RSAD1Q9HA92 442 aa13.72□□□□□ -0.21
CLN3-210ENST00000563874 OGTO15294 1046 aa13.72□□□□□ -0.21
CLN3-210ENST00000563874 B4GALT5O43286 388 aa13.72□□□□□ -0.21
CLN3-210ENST00000563874 AHCYL1O43865 530 aa13.72□□□□□ -0.21
CLN3-210ENST00000563874 RFPL1O75677 317 aa13.72□□□□□ -0.21
CLN3-210ENST00000563874 AP1G2O75843 785 aa13.72□□□□□ -0.21
CLN3-210ENST00000563874 NBPF12Q5TAG4 269 aaPredicted RBP13.72□□□□□ -0.21
CLN3-210ENST00000563874 IZUMO2Q6UXV1 221 aa13.72□□□□□ -0.21
CLN3-210ENST00000563874 TMPRSS6Q8IU80 811 aa13.72□□□□□ -0.21
CLN3-210ENST00000563874 ACO2Q99798 780 aaKnown RBP13.72□□□□□ -0.21
CLN3-210ENST00000563874 TMEM134Q9H6X4 195 aa13.72□□□□□ -0.21
CLN3-210ENST00000563874 KCNK4Q9NYG8 393 aa13.72□□□□□ -0.21
CLN3-210ENST00000563874 SLC7A8Q9UHI5 535 aa13.72□□□□□ -0.21
CLN3-210ENST00000563874 KIF3CO14782 793 aa13.72□□□□□ -0.21
CLN3-210ENST00000563874 PRKCBP05771 671 aa13.72□□□□□ -0.21
CLN3-210ENST00000563874 STIP1P31948 543 aaKnown RBP13.72□□□□□ -0.21
CLN3-210ENST00000563874 C1orf146Q5VVC0 180 aa13.72□□□□□ -0.21
CLN3-210ENST00000563874 TRNP1Q6NT89 227 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms