RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 SNF8Q96H20 258 aa13.84□□□□□ -0.19
CLK3-206ENST00000562078 TTC25Q96NG3 672 aa13.84□□□□□ -0.19
CLK3-206ENST00000562078 NMUR2Q9GZQ4 415 aa13.84□□□□□ -0.19
CLK3-206ENST00000562078 JPH1Q9HDC5 661 aaPredicted RBP13.84□□□□□ -0.19
CLK3-206ENST00000562078 HESX1Q9UBX0 185 aa13.84□□□□□ -0.19
CLK3-206ENST00000562078 EMSYQ7Z589 1322 aa13.84□□□□□ -0.19
CLK3-206ENST00000562078 GSTTP1A0A1W2PQM5 241 aa13.84□□□□□ -0.19
CLK3-206ENST00000562078 FCHO1O14526 889 aa13.84□□□□□ -0.19
CLK3-206ENST00000562078 AP1G1O43747 822 aa13.84□□□□□ -0.19
CLK3-206ENST00000562078 COMTP21964 271 aa13.84□□□□□ -0.19
CLK3-206ENST00000562078 SOX5P35711 763 aa13.84□□□□□ -0.19
CLK3-206ENST00000562078 STAT1P42224 750 aa13.84□□□□□ -0.19
CLK3-206ENST00000562078 KRT72Q14CN4 511 aa13.84□□□□□ -0.19
CLK3-206ENST00000562078 CLPPQ16740 277 aaPredicted RBP13.84□□□□□ -0.19
CLK3-206ENST00000562078 ANKDD1AQ495B1 522 aa13.84□□□□□ -0.19
CLK3-206ENST00000562078 TMCO4Q5TGY1 634 aa13.84□□□□□ -0.19
CLK3-206ENST00000562078 GPAT2Q6NUI2 795 aa13.84□□□□□ -0.19
CLK3-206ENST00000562078 ALYREFQ86V81 257 aaKnown RBP13.84□□□□□ -0.19
CLK3-206ENST00000562078 XXYLT1Q8NBI6 393 aa13.84□□□□□ -0.19
CLK3-206ENST00000562078 CHST13Q8NET6 341 aa13.84□□□□□ -0.19
CLK3-206ENST00000562078 ATG4AQ8WYN0 398 aa13.84□□□□□ -0.19
CLK3-206ENST00000562078 CEP170P1Q96L14 293 aa13.84□□□□□ -0.19
CLK3-206ENST00000562078 MRPL1Q9BYD6 325 aaKnown RBP13.84□□□□□ -0.19
CLK3-206ENST00000562078 TRIM55Q9BYV6 548 aa13.84□□□□□ -0.19
CLK3-206ENST00000562078 SPATC1LQ9H0A9 340 aa13.84□□□□□ -0.19
CLK3-206ENST00000562078 S100A14Q9HCY8 104 aa13.84□□□□□ -0.19
CLK3-206ENST00000562078 APEX2Q9UBZ4 518 aa13.84□□□□□ -0.19
CLK3-206ENST00000562078 PLA2G4CQ9UP65 541 aa13.84□□□□□ -0.19
CLK3-206ENST00000562078 CCL15-CCL14A0A0B4J2E2 113 aa13.83□□□□□ -0.2
CLK3-206ENST00000562078 DNAJC6O75061 913 aa13.83□□□□□ -0.2
CLK3-206ENST00000562078 TM7SF2O76062 418 aa13.83□□□□□ -0.2
CLK3-206ENST00000562078 OXSR1O95747 527 aaPredicted RBP13.83□□□□□ -0.2
CLK3-206ENST00000562078 NPTX2P47972 431 aa13.83□□□□□ -0.2
CLK3-206ENST00000562078 VAMP7P51809 220 aa13.83□□□□□ -0.2
CLK3-206ENST00000562078 GTF2A2P52657 109 aa13.83□□□□□ -0.2
CLK3-206ENST00000562078 VCPP55072 806 aaKnown RBP13.83□□□□□ -0.2
CLK3-206ENST00000562078 KDSRQ06136 332 aa13.83□□□□□ -0.2
CLK3-206ENST00000562078 DMP1Q13316 513 aaPredicted RBP13.83□□□□□ -0.2
CLK3-206ENST00000562078 TLR1Q15399 786 aa13.83□□□□□ -0.2
CLK3-206ENST00000562078 BCL2A1Q16548 175 aa13.83□□□□□ -0.2
CLK3-206ENST00000562078 CCL15Q16663 113 aa13.83□□□□□ -0.2
CLK3-206ENST00000562078 HSP90AA5PQ58FG0 334 aa13.83□□□□□ -0.2
CLK3-206ENST00000562078 C6orf183Q5T699 404 aa13.83□□□□□ -0.2
CLK3-206ENST00000562078 SWSAP1Q6NVH7 229 aa13.83□□□□□ -0.2
CLK3-206ENST00000562078 TMC7Q7Z402 723 aa13.83□□□□□ -0.2
CLK3-206ENST00000562078 TMPRSS6Q8IU80 811 aa13.83□□□□□ -0.2
CLK3-206ENST00000562078 CCDC60Q8IWA6 550 aaPredicted RBP13.83□□□□□ -0.2
CLK3-206ENST00000562078 C12orf56Q8IXR9 622 aa13.83□□□□□ -0.2
CLK3-206ENST00000562078 BSNDQ8WZ55 320 aa13.83□□□□□ -0.2
CLK3-206ENST00000562078 ATP6V0A1Q93050 837 aa13.83□□□□□ -0.2
CLK3-206ENST00000562078 GFM2Q969S9 779 aaKnown RBP13.83□□□□□ -0.2
CLK3-206ENST00000562078 GCNAQ96QF7 691 aa13.83□□□□□ -0.2
CLK3-206ENST00000562078 SENP7Q9BQF6 1050 aa13.83□□□□□ -0.2
CLK3-206ENST00000562078 ST6GALNAC4Q9H4F1 302 aa13.83□□□□□ -0.2
CLK3-206ENST00000562078 SLC9A2Q9UBY0 812 aa13.83□□□□□ -0.2
CLK3-206ENST00000562078 ANAPC5Q9UJX4 755 aa13.83□□□□□ -0.2
CLK3-206ENST00000562078 SMG5Q9UPR3 1016 aaKnown RBP13.83□□□□□ -0.2
CLK3-206ENST00000562078 FADS3Q9Y5Q0 445 aa13.83□□□□□ -0.2
CLK3-206ENST00000562078 SIP14410 1827 aa13.83□□□□□ -0.2
CLK3-206ENST00000562078 GOLGA8IPA6NC78 632 aa13.83□□□□□ -0.2
CLK3-206ENST00000562078 GOLGA8JA6NMD2 632 aa13.83□□□□□ -0.2
CLK3-206ENST00000562078 TYROBPO43914 113 aa13.83□□□□□ -0.2
CLK3-206ENST00000562078 GGPS1O95749 300 aa13.83□□□□□ -0.2
CLK3-206ENST00000562078 ENTPD1P49961 510 aa13.83□□□□□ -0.2
CLK3-206ENST00000562078 ACTR2P61160 394 aa13.83□□□□□ -0.2
CLK3-206ENST00000562078 PRKCEQ02156 737 aa13.83□□□□□ -0.2
CLK3-206ENST00000562078 PPP3CAQ08209 521 aa13.83□□□□□ -0.2
CLK3-206ENST00000562078 MESDQ14696 234 aa13.83□□□□□ -0.2
CLK3-206ENST00000562078 C16orf72Q14CZ0 275 aa13.83□□□□□ -0.2
CLK3-206ENST00000562078 RASA2Q15283 850 aa13.83□□□□□ -0.2
CLK3-206ENST00000562078 TGFBIQ15582 683 aa13.83□□□□□ -0.2
CLK3-206ENST00000562078 ADRM1Q16186 407 aa13.83□□□□□ -0.2
CLK3-206ENST00000562078 ARHGAP44Q17R89 818 aa13.83□□□□□ -0.2
CLK3-206ENST00000562078 HP1BP3Q5SSJ5 553 aaPredicted RBP13.83□□□□□ -0.2
CLK3-206ENST00000562078 CAPN12Q6ZSI9 719 aa13.83□□□□□ -0.2
CLK3-206ENST00000562078 RIOX2Q8IUF8 465 aa13.83□□□□□ -0.2
CLK3-206ENST00000562078 PLEKHO2Q8TD55 490 aa13.83□□□□□ -0.2
CLK3-206ENST00000562078 MAK16Q9BXY0 300 aaKnown RBP13.83□□□□□ -0.2
CLK3-206ENST00000562078 GPR88Q9GZN0 384 aa13.83□□□□□ -0.2
CLK3-206ENST00000562078 GPAMQ9HCL2 828 aa13.83□□□□□ -0.2
CLK3-206ENST00000562078 TRPV5Q9NQA5 729 aa13.83□□□□□ -0.2
CLK3-206ENST00000562078 UTP6Q9NYH9 597 aaKnown RBP13.83□□□□□ -0.2
CLK3-206ENST00000562078 FBXO40Q9UH90 709 aa13.83□□□□□ -0.2
CLK3-206ENST00000562078 SEPT9Q9UHD8 586 aaPredicted RBP13.83□□□□□ -0.2
CLK3-206ENST00000562078 MIF4GDA9UHW6 222 aaKnown RBP13.82□□□□□ -0.2
CLK3-206ENST00000562078 CBFA2T3O75081 653 aa13.82□□□□□ -0.2
CLK3-206ENST00000562078 LRRN2O75325 713 aa13.82□□□□□ -0.2
CLK3-206ENST00000562078 PSAPP07602 524 aa13.82□□□□□ -0.2
CLK3-206ENST00000562078 GCLMP48507 274 aa13.82□□□□□ -0.2
CLK3-206ENST00000562078 HUNKP57058 714 aa13.82□□□□□ -0.2
CLK3-206ENST00000562078 NOP14P78316 857 aaKnown RBP13.82□□□□□ -0.2
CLK3-206ENST00000562078 PLCB3Q01970 1234 aa13.82□□□□□ -0.2
CLK3-206ENST00000562078 CNTN2Q02246 1040 aa13.82□□□□□ -0.2
CLK3-206ENST00000562078 EXOC8Q8IYI6 725 aa13.82□□□□□ -0.2
CLK3-206ENST00000562078 SDR16C5Q8N3Y7 309 aa13.82□□□□□ -0.2
CLK3-206ENST00000562078 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.82□□□□□ -0.2
CLK3-206ENST00000562078 TMEM161BQ8NDZ6 487 aa13.82□□□□□ -0.2
CLK3-206ENST00000562078 PPP4R1Q8TF05 950 aa13.82□□□□□ -0.2
CLK3-206ENST00000562078 USP6NLQ92738 828 aa13.82□□□□□ -0.2
CLK3-206ENST00000562078 CLIP3Q96DZ5 547 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 98.6 ms