RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 ACKR2O00590 384 aa12.62□□□□□ -0.39
CCDC88C-211ENST00000556726 MOCS2O96007 188 aaPredicted RBP12.62□□□□□ -0.39
CCDC88C-211ENST00000556726 ZCCHC18P0CG32 403 aa12.62□□□□□ -0.39
CCDC88C-211ENST00000556726 ZBTB48P10074 688 aaPredicted RBP12.62□□□□□ -0.39
CCDC88C-211ENST00000556726 ADCYAP1R1P41586 468 aa12.62□□□□□ -0.39
CCDC88C-211ENST00000556726 SERPINB4P48594 390 aa12.62□□□□□ -0.39
CCDC88C-211ENST00000556726 UNC5BQ8IZJ1 945 aa12.62□□□□□ -0.39
CCDC88C-211ENST00000556726 CCNYL1Q8N7R7 359 aa12.62□□□□□ -0.39
CCDC88C-211ENST00000556726 C12orf50Q8NA57 414 aaPredicted RBP12.62□□□□□ -0.39
CCDC88C-211ENST00000556726 OLIG1Q8TAK6 271 aa12.62□□□□□ -0.39
CCDC88C-211ENST00000556726 GOLGA2P5Q9HBQ8 144 aa12.62□□□□□ -0.39
CCDC88C-211ENST00000556726 ADAMTSL1Q8N6G6 1762 aa12.62□□□□□ -0.39
CCDC88C-211ENST00000556726 ZMPSTE24O75844 475 aa12.62□□□□□ -0.39
CCDC88C-211ENST00000556726 TPH1P17752 444 aa12.62□□□□□ -0.39
CCDC88C-211ENST00000556726 SOX11P35716 441 aa12.62□□□□□ -0.39
CCDC88C-211ENST00000556726 SULT1E1P49888 294 aa12.62□□□□□ -0.39
CCDC88C-211ENST00000556726 STX3Q13277 289 aa12.62□□□□□ -0.39
CCDC88C-211ENST00000556726 KPNB1Q14974 876 aaKnown RBP12.62□□□□□ -0.39
CCDC88C-211ENST00000556726 RASA2Q15283 850 aa12.62□□□□□ -0.39
CCDC88C-211ENST00000556726 GRAMD1BQ3KR37 738 aa12.62□□□□□ -0.39
CCDC88C-211ENST00000556726 LACTB2Q53H82 288 aaPredicted RBP12.62□□□□□ -0.39
CCDC88C-211ENST00000556726 RNASEH2BQ5TBB1 312 aaKnown RBP12.62□□□□□ -0.39
CCDC88C-211ENST00000556726 RASIP1Q5U651 963 aa12.62□□□□□ -0.39
CCDC88C-211ENST00000556726 FAM228AQ86W67 206 aa12.62□□□□□ -0.39
CCDC88C-211ENST00000556726 AGGF1Q8N302 714 aaeCLIP12.62□□□□□ -0.39
CCDC88C-211ENST00000556726 RIBC1Q8N443 379 aaPredicted RBP12.62□□□□□ -0.39
CCDC88C-211ENST00000556726 EXT2Q93063 718 aa12.62□□□□□ -0.39
CCDC88C-211ENST00000556726 KLRG1Q96E93 195 aa12.62□□□□□ -0.39
CCDC88C-211ENST00000556726 CLPTM1LQ96KA5 538 aa12.62□□□□□ -0.39
CCDC88C-211ENST00000556726 PGLYRP2Q96PD5 576 aa12.62□□□□□ -0.39
CCDC88C-211ENST00000556726 CNPY3Q9BT09 278 aa12.62□□□□□ -0.39
CCDC88C-211ENST00000556726 DLGAP2Q9P1A6 1054 aa12.62□□□□□ -0.39
CCDC88C-211ENST00000556726 CACNG4Q9UBN1 327 aa12.62□□□□□ -0.39
CCDC88C-211ENST00000556726 GGA2Q9UJY4 613 aa12.62□□□□□ -0.39
CCDC88C-211ENST00000556726 GOLGA8QA0A0J9YX86 632 aa12.61□□□□□ -0.39
CCDC88C-211ENST00000556726 GOLGA8OA6NCC3 632 aa12.61□□□□□ -0.39
CCDC88C-211ENST00000556726 GOLGA8NF8WBI6 632 aa12.61□□□□□ -0.39
CCDC88C-211ENST00000556726 NFKBIEO00221 500 aa12.61□□□□□ -0.39
CCDC88C-211ENST00000556726 FCHO1O14526 889 aa12.61□□□□□ -0.39
CCDC88C-211ENST00000556726 HBP1O60381 514 aa12.61□□□□□ -0.39
CCDC88C-211ENST00000556726 LSM8O95777 96 aaKnown RBP12.61□□□□□ -0.39
CCDC88C-211ENST00000556726 EIF4BP23588 611 aaKnown RBP12.61□□□□□ -0.39
CCDC88C-211ENST00000556726 ARL2P36404 184 aa12.61□□□□□ -0.39
CCDC88C-211ENST00000556726 MLH1P40692 756 aa12.61□□□□□ -0.39
CCDC88C-211ENST00000556726 GRIA1P42261 906 aa12.61□□□□□ -0.39
CCDC88C-211ENST00000556726 GLRBP48167 497 aa12.61□□□□□ -0.39
CCDC88C-211ENST00000556726 GBE1Q04446 702 aa12.61□□□□□ -0.39
CCDC88C-211ENST00000556726 BNIP1Q12981 228 aa12.61□□□□□ -0.39
CCDC88C-211ENST00000556726 ATG16L1Q676U5 607 aa12.61□□□□□ -0.39
CCDC88C-211ENST00000556726 ZPBP2Q6X784 338 aa12.61□□□□□ -0.39
CCDC88C-211ENST00000556726 WDR75Q8IWA0 830 aaKnown RBP12.61□□□□□ -0.39
CCDC88C-211ENST00000556726 WDR35Q9P2L0 1181 aa12.61□□□□□ -0.39
CCDC88C-211ENST00000556726 SIGLEC16A6NMB1 481 aa12.61□□□□□ -0.39
CCDC88C-211ENST00000556726 ALOX15BO15296 676 aa12.61□□□□□ -0.39
CCDC88C-211ENST00000556726 CCDC22O60826 627 aa12.61□□□□□ -0.39
CCDC88C-211ENST00000556726 EDF1O60869 148 aaKnown RBP12.61□□□□□ -0.39
CCDC88C-211ENST00000556726 MAFO75444 373 aaPredicted RBP12.61□□□□□ -0.39
CCDC88C-211ENST00000556726 HSPA4LO95757 839 aa12.61□□□□□ -0.39
CCDC88C-211ENST00000556726 CYP2F1P24903 491 aa12.61□□□□□ -0.39
CCDC88C-211ENST00000556726 GMPRP36959 345 aa12.61□□□□□ -0.39
CCDC88C-211ENST00000556726 PDK4Q16654 411 aa12.61□□□□□ -0.39
CCDC88C-211ENST00000556726 KCNT2Q6UVM3 1135 aa12.61□□□□□ -0.39
CCDC88C-211ENST00000556726 EP400NLQ6ZTU2 488 aa12.61□□□□□ -0.39
CCDC88C-211ENST00000556726 REPS2Q8NFH8 660 aa12.61□□□□□ -0.39
CCDC88C-211ENST00000556726 LGMNQ99538 433 aa12.61□□□□□ -0.39
CCDC88C-211ENST00000556726 ARL8BQ9NVJ2 186 aa12.61□□□□□ -0.39
CCDC88C-211ENST00000556726 PRMT7Q9NVM4 692 aaPredicted RBP12.61□□□□□ -0.39
CCDC88C-211ENST00000556726 PAK5Q9P286 719 aa12.61□□□□□ -0.39
CCDC88C-211ENST00000556726 COMMD10Q9Y6G5 202 aa12.61□□□□□ -0.39
CCDC88C-211ENST00000556726 WDR27A2RRH5 827 aa12.61□□□□□ -0.39
CCDC88C-211ENST00000556726 LYPLA1O75608 230 aaPredicted RBP12.61□□□□□ -0.39
CCDC88C-211ENST00000556726 KRT36O76013 467 aa12.61□□□□□ -0.39
CCDC88C-211ENST00000556726 TCN1P20061 433 aaPredicted RBP12.61□□□□□ -0.39
CCDC88C-211ENST00000556726 PPP1R26Q5T8A7 1209 aaPredicted RBP12.61□□□□□ -0.39
CCDC88C-211ENST00000556726 IGDCC3Q8IVU1 814 aa12.61□□□□□ -0.39
CCDC88C-211ENST00000556726 CLEC4CQ8WTT0 213 aa12.61□□□□□ -0.39
CCDC88C-211ENST00000556726 NSL1Q96IY1 281 aa12.61□□□□□ -0.39
CCDC88C-211ENST00000556726 STOML1Q9UBI4 398 aa12.61□□□□□ -0.39
CCDC88C-211ENST00000556726 HUS1O60921 280 aa12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 ATP5HO75947 161 aa12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 GPX6P59796 221 aa12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 ZNF252P-AS1Q0IIN9 211 aa12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 CA9Q16790 459 aa12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 CCDC14Q49A88 953 aa12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 RFWD3Q6PCD5 774 aa12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 RYBPQ8N488 228 aaPredicted RBP12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 RNF148Q8N7C7 305 aa12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 FAM13CQ8NE31 585 aa12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 SREK1Q8WXA9 508 aaKnown RBP12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 DNAJC9Q8WXX5 260 aa12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 C18orf25Q96B23 403 aaPredicted RBP12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 ZNF669Q96BR6 464 aaPredicted RBP12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 SNRNP25Q9BV90 132 aaKnown RBP12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 SLC24A2Q9UI40 661 aa12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 APOBEC2Q9Y235 224 aaKnown RBP12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 SRRM3A6NNA2 597 aaPredicted RBP12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 APOC4-APOC2K7ER74 178 aa12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 NDC80O14777 642 aa12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 MAP3K7O43318 606 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms