RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 SOWAHDA6NJG2 315 aa12.85□□□□□ -0.35
SHMT2-209ENST00000553949 YJEFN3A6XGL0 299 aa12.85□□□□□ -0.35
SHMT2-209ENST00000553949 E7ENQ6 273 aa12.85□□□□□ -0.35
SHMT2-209ENST00000553949 SART1O43290 800 aaKnown RBP12.85□□□□□ -0.35
SHMT2-209ENST00000553949 RTN2O75298 545 aa12.85□□□□□ -0.35
SHMT2-209ENST00000553949 ABL1P00519 1130 aa12.85□□□□□ -0.35
SHMT2-209ENST00000553949 CALB1P05937 261 aa12.85□□□□□ -0.35
SHMT2-209ENST00000553949 CEBPBP17676 345 aa12.85□□□□□ -0.35
SHMT2-209ENST00000553949 YWHAGP61981 247 aaKnown RBP eCLIP12.85□□□□□ -0.35
SHMT2-209ENST00000553949 CYP4F8P98187 520 aa12.85□□□□□ -0.35
SHMT2-209ENST00000553949 TFF2Q03403 129 aa12.85□□□□□ -0.35
SHMT2-209ENST00000553949 C1QBPQ07021 282 aaKnown RBP12.85□□□□□ -0.35
SHMT2-209ENST00000553949 TEAD2Q15562 447 aa12.85□□□□□ -0.35
SHMT2-209ENST00000553949 CCDC122Q5T0U0 273 aa12.85□□□□□ -0.35
SHMT2-209ENST00000553949 SNX30Q5VWJ9 437 aa12.85□□□□□ -0.35
SHMT2-209ENST00000553949 OR6B2Q6IFH4 312 aa12.85□□□□□ -0.35
SHMT2-209ENST00000553949 ALKBH5Q6P6C2 394 aaKnown RBP12.85□□□□□ -0.35
SHMT2-209ENST00000553949 OLFML1Q6UWY5 402 aa12.85□□□□□ -0.35
SHMT2-209ENST00000553949 MON1BQ7L1V2 547 aa12.85□□□□□ -0.35
SHMT2-209ENST00000553949 GET4Q7L5D6 327 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-209ENST00000553949 SCD5Q86SK9 330 aa12.85□□□□□ -0.35
SHMT2-209ENST00000553949 XYLT1Q86Y38 959 aa12.85□□□□□ -0.35
SHMT2-209ENST00000553949 DNAAF5Q86Y56 855 aa12.85□□□□□ -0.35
SHMT2-209ENST00000553949 ZDHHC17Q8IUH5 632 aa12.85□□□□□ -0.35
SHMT2-209ENST00000553949 TMEM139Q8IV31 216 aa12.85□□□□□ -0.35
SHMT2-209ENST00000553949 CCDC170Q8IYT3 715 aa12.85□□□□□ -0.35
SHMT2-209ENST00000553949 MCOLN2Q8IZK6 566 aa12.85□□□□□ -0.35
SHMT2-209ENST00000553949 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-209ENST00000553949 ITFG1Q8TB96 612 aa12.85□□□□□ -0.35
SHMT2-209ENST00000553949 MRPS31Q92665 395 aaKnown RBP12.85□□□□□ -0.35
SHMT2-209ENST00000553949 VCPIP1Q96JH7 1222 aa12.85□□□□□ -0.35
SHMT2-209ENST00000553949 ISCUQ9H1K1 167 aa12.85□□□□□ -0.35
SHMT2-209ENST00000553949 POMKQ9H5K3 350 aa12.85□□□□□ -0.35
SHMT2-209ENST00000553949 SPTLC3Q9NUV7 552 aa12.85□□□□□ -0.35
SHMT2-209ENST00000553949 STRIP2Q9ULQ0 834 aa12.85□□□□□ -0.35
SHMT2-209ENST00000553949 PATJQ8NI35 1801 aa12.84□□□□□ -0.35
SHMT2-209ENST00000553949 PSEN1P49768 467 aa12.84□□□□□ -0.35
SHMT2-209ENST00000553949 SLC6A3Q01959 620 aa12.84□□□□□ -0.35
SHMT2-209ENST00000553949 ZNF268Q14587 947 aaPredicted RBP12.84□□□□□ -0.35
SHMT2-209ENST00000553949 PUS10Q3MIT2 529 aaKnown RBP12.84□□□□□ -0.35
SHMT2-209ENST00000553949 ARHGAP15Q53QZ3 475 aa12.84□□□□□ -0.35
SHMT2-209ENST00000553949 BSPRYQ5W0U4 402 aa12.84□□□□□ -0.35
SHMT2-209ENST00000553949 PTCRAQ6ISU1 281 aaPredicted RBP12.84□□□□□ -0.35
SHMT2-209ENST00000553949 TOGARAM2Q6ZUX3 1019 aa12.84□□□□□ -0.35
SHMT2-209ENST00000553949 HFE2Q6ZVN8 426 aa12.84□□□□□ -0.35
SHMT2-209ENST00000553949 PHLDB2Q86SQ0 1253 aa12.84□□□□□ -0.35
SHMT2-209ENST00000553949 ING5Q8WYH8 240 aa12.84□□□□□ -0.35
SHMT2-209ENST00000553949 GOLGA1Q92805 767 aa12.84□□□□□ -0.35
SHMT2-209ENST00000553949 MCRS1Q96EZ8 462 aa12.84□□□□□ -0.35
SHMT2-209ENST00000553949 PIWIL1Q96J94 861 aaKnown RBP12.84□□□□□ -0.35
SHMT2-209ENST00000553949 OSER1Q9NX31 292 aa12.84□□□□□ -0.35
SHMT2-209ENST00000553949 CLIC5Q9NZA1 410 aa12.84□□□□□ -0.35
SHMT2-209ENST00000553949 WDR35Q9P2L0 1181 aa12.84□□□□□ -0.35
SHMT2-209ENST00000553949 THEGQ9P2T0 379 aa12.84□□□□□ -0.35
SHMT2-209ENST00000553949 COL6A3P12111 3177 aa12.83□□□□□ -0.36
SHMT2-209ENST00000553949 C2orf78A6NCI8 922 aa12.83□□□□□ -0.36
SHMT2-209ENST00000553949 GOLGA8SH3BPF8 625 aa12.83□□□□□ -0.36
SHMT2-209ENST00000553949 HSF2BPO75031 334 aa12.83□□□□□ -0.36
SHMT2-209ENST00000553949 LCA5LO95447 670 aa12.83□□□□□ -0.36
SHMT2-209ENST00000553949 GLI1P08151 1106 aa12.83□□□□□ -0.36
SHMT2-209ENST00000553949 MYBL1P10243 752 aa12.83□□□□□ -0.36
SHMT2-209ENST00000553949 RALAP11233 206 aa12.83□□□□□ -0.36
SHMT2-209ENST00000553949 RARGP13631 454 aa12.83□□□□□ -0.36
SHMT2-209ENST00000553949 RRM1P23921 792 aa12.83□□□□□ -0.36
SHMT2-209ENST00000553949 DDX6P26196 483 aaKnown RBP eCLIP12.83□□□□□ -0.36
SHMT2-209ENST00000553949 CYLC1P35663 651 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-209ENST00000553949 SCNN1AP37088 669 aa12.83□□□□□ -0.36
SHMT2-209ENST00000553949 TUBP50607 506 aa12.83□□□□□ -0.36
SHMT2-209ENST00000553949 GSCP56915 257 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-209ENST00000553949 YWHAZP63104 245 aaKnown RBP12.83□□□□□ -0.36
SHMT2-209ENST00000553949 CCDC173Q0VFZ6 552 aa12.83□□□□□ -0.36
SHMT2-209ENST00000553949 MTF1Q14872 753 aa12.83□□□□□ -0.36
SHMT2-209ENST00000553949 TAF5Q15542 800 aa12.83□□□□□ -0.36
SHMT2-209ENST00000553949 SMAD2Q15796 467 aaKnown RBP12.83□□□□□ -0.36
SHMT2-209ENST00000553949 EFHC1Q5JVL4 640 aa12.83□□□□□ -0.36
SHMT2-209ENST00000553949 HECTD3Q5T447 861 aa12.83□□□□□ -0.36
SHMT2-209ENST00000553949 STXBP5Q5T5C0 1151 aa12.83□□□□□ -0.36
SHMT2-209ENST00000553949 GPR158Q5T848 1215 aa12.83□□□□□ -0.36
SHMT2-209ENST00000553949 BTBD8Q5XKL5 378 aa12.83□□□□□ -0.36
SHMT2-209ENST00000553949 TXNDC8Q6A555 127 aa12.83□□□□□ -0.36
SHMT2-209ENST00000553949 POTEHQ6S545 545 aa12.83□□□□□ -0.36
SHMT2-209ENST00000553949 RAD9BQ6WBX8 426 aa12.83□□□□□ -0.36
SHMT2-209ENST00000553949 SLC26A9Q7LBE3 791 aa12.83□□□□□ -0.36
SHMT2-209ENST00000553949 LRRC8AQ8IWT6 810 aa12.83□□□□□ -0.36
SHMT2-209ENST00000553949 NPAS3Q8IXF0 933 aa12.83□□□□□ -0.36
SHMT2-209ENST00000553949 MAB21L3Q8N8X9 362 aa12.83□□□□□ -0.36
SHMT2-209ENST00000553949 C3orf20Q8ND61 904 aa12.83□□□□□ -0.36
SHMT2-209ENST00000553949 FGF13Q92913 245 aa12.83□□□□□ -0.36
SHMT2-209ENST00000553949 FAM149B1Q96BN6 582 aa12.83□□□□□ -0.36
SHMT2-209ENST00000553949 TRIM11Q96F44 468 aa12.83□□□□□ -0.36
SHMT2-209ENST00000553949 SLC46A2Q9BY10 475 aa12.83□□□□□ -0.36
SHMT2-209ENST00000553949 TASP1Q9H6P5 420 aa12.83□□□□□ -0.36
SHMT2-209ENST00000553949 CCSER2Q9H7U1 834 aa12.83□□□□□ -0.36
SHMT2-209ENST00000553949 TRPC7Q9HCX4 862 aa12.83□□□□□ -0.36
SHMT2-209ENST00000553949 ABCC13Q9NSE7 274 aa12.83□□□□□ -0.36
SHMT2-209ENST00000553949 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.83□□□□□ -0.36
SHMT2-209ENST00000553949 ASNSD1Q9NWL6 643 aa12.83□□□□□ -0.36
SHMT2-209ENST00000553949 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.83□□□□□ -0.36
SHMT2-209ENST00000553949 ZMYM5Q9UJ78 669 aa12.83□□□□□ -0.36
SHMT2-209ENST00000553949 CDH7Q9ULB5 785 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms