RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 RECQLP46063 649 aaPredicted RBP16.87■□□□□ 0.29
CUX1-213ENST00000549414 MMRN1Q13201 1228 aa16.87■□□□□ 0.29
CUX1-213ENST00000549414 PTK6Q13882 451 aa16.87■□□□□ 0.29
CUX1-213ENST00000549414 TAS2R42Q7RTR8 314 aa16.87■□□□□ 0.29
CUX1-213ENST00000549414 C12orf56Q8IXR9 622 aa16.87■□□□□ 0.29
CUX1-213ENST00000549414 SIX2Q9NPC8 291 aa16.87■□□□□ 0.29
CUX1-213ENST00000549414 GRID1Q9ULK0 1009 aa16.87■□□□□ 0.29
CUX1-213ENST00000549414 PCDHA2Q9Y5H9 948 aa16.87■□□□□ 0.29
CUX1-213ENST00000549414 PHRF1Q9P1Y6 1649 aaKnown RBP16.86■□□□□ 0.29
CUX1-213ENST00000549414 STRNO43815 780 aa16.86■□□□□ 0.29
CUX1-213ENST00000549414 CHEK2O96017 543 aa16.86■□□□□ 0.29
CUX1-213ENST00000549414 ASS1P00966 412 aaKnown RBP16.86■□□□□ 0.29
CUX1-213ENST00000549414 GHRP10912 638 aa16.86■□□□□ 0.29
CUX1-213ENST00000549414 RBL1P28749 1068 aa16.86■□□□□ 0.29
CUX1-213ENST00000549414 CYB5D1Q6P9G0 228 aa16.86■□□□□ 0.29
CUX1-213ENST00000549414 NLGN2Q8NFZ4 835 aa16.86■□□□□ 0.29
CUX1-213ENST00000549414 NEUROG2Q9H2A3 272 aa16.86■□□□□ 0.29
CUX1-213ENST00000549414 XPNPEP1Q9NQW7 623 aa16.86■□□□□ 0.29
CUX1-213ENST00000549414 R3HDM2Q9Y2K5 976 aaKnown RBP16.86■□□□□ 0.29
CUX1-213ENST00000549414 FECHP22830 423 aa16.86■□□□□ 0.29
CUX1-213ENST00000549414 KDELR1P24390 212 aa16.86■□□□□ 0.29
CUX1-213ENST00000549414 RNF219Q5W0B1 726 aaPredicted RBP16.86■□□□□ 0.29
CUX1-213ENST00000549414 CHSY1Q86X52 802 aa16.86■□□□□ 0.29
CUX1-213ENST00000549414 IQCKQ8N0W5 287 aa16.86■□□□□ 0.29
CUX1-213ENST00000549414 DEFB106AQ8N104 65 aa16.86■□□□□ 0.29
CUX1-213ENST00000549414 LRRC57Q8N9N7 239 aa16.86■□□□□ 0.29
CUX1-213ENST00000549414 PDZD8Q8NEN9 1154 aa16.86■□□□□ 0.29
CUX1-213ENST00000549414 FAM136AQ96C01 138 aa16.86■□□□□ 0.29
CUX1-213ENST00000549414 TRIM62Q9BVG3 475 aa16.86■□□□□ 0.29
CUX1-213ENST00000549414 PCYOX1Q9UHG3 505 aa16.86■□□□□ 0.29
CUX1-213ENST00000549414 E5RI56 91 aa16.86■□□□□ 0.29
CUX1-213ENST00000549414 SNX2O60749 519 aa16.86■□□□□ 0.29
CUX1-213ENST00000549414 C10orf120Q5SQS8 335 aa16.86■□□□□ 0.29
CUX1-213ENST00000549414 DDIASQ8IXT1 998 aa16.86■□□□□ 0.29
CUX1-213ENST00000549414 SLITRK1Q96PX8 696 aa16.86■□□□□ 0.29
CUX1-213ENST00000549414 ARHGEF38Q9NXL2 777 aa16.86■□□□□ 0.29
CUX1-213ENST00000549414 BTBD7Q9P203 1132 aa16.86■□□□□ 0.29
CUX1-213ENST00000549414 USP12O75317 370 aa16.86■□□□□ 0.29
CUX1-213ENST00000549414 PAEPP09466 180 aa16.86■□□□□ 0.29
CUX1-213ENST00000549414 BGNP21810 368 aa16.86■□□□□ 0.29
CUX1-213ENST00000549414 GLRBP48167 497 aa16.86■□□□□ 0.29
CUX1-213ENST00000549414 JAM2P57087 298 aa16.86■□□□□ 0.29
CUX1-213ENST00000549414 MAGEB18Q96M61 343 aa16.86■□□□□ 0.29
CUX1-213ENST00000549414 TRPC7Q9HCX4 862 aa16.86■□□□□ 0.29
CUX1-213ENST00000549414 NUDT5Q9UKK9 219 aa16.86■□□□□ 0.29
CUX1-213ENST00000549414 MROH7Q68CQ1 1323 aa16.85■□□□□ 0.29
CUX1-213ENST00000549414 GFAPP14136 432 aa16.85■□□□□ 0.29
CUX1-213ENST00000549414 SKOR1P84550 965 aa16.85■□□□□ 0.29
CUX1-213ENST00000549414 VEPH1Q14D04 833 aa16.85■□□□□ 0.29
CUX1-213ENST00000549414 FRA10AC1Q70Z53 315 aa16.85■□□□□ 0.29
CUX1-213ENST00000549414 PGM2Q96G03 612 aa16.85■□□□□ 0.29
CUX1-213ENST00000549414 UNKQ9C0B0 810 aaKnown RBP16.85■□□□□ 0.29
CUX1-213ENST00000549414 TRIM33Q9UPN9 1127 aa16.85■□□□□ 0.29
CUX1-213ENST00000549414 TNFSF13BQ9Y275 285 aa16.85■□□□□ 0.29
CUX1-213ENST00000549414 DDX3YO15523 660 aaKnown RBP16.85■□□□□ 0.29
CUX1-213ENST00000549414 IRF1P10914 325 aa16.85■□□□□ 0.29
CUX1-213ENST00000549414 ADSSP30520 456 aa16.85■□□□□ 0.29
CUX1-213ENST00000549414 AVPR1AP37288 418 aa16.85■□□□□ 0.29
CUX1-213ENST00000549414 LBX2Q6XYB7 198 aa16.85■□□□□ 0.29
CUX1-213ENST00000549414 COLGALT1Q8NBJ5 622 aa16.85■□□□□ 0.29
CUX1-213ENST00000549414 GAD1Q99259 594 aa16.85■□□□□ 0.29
CUX1-213ENST00000549414 SYT15Q9BQS2 421 aa16.85■□□□□ 0.29
CUX1-213ENST00000549414 ODC1P11926 461 aa16.85■□□□□ 0.29
CUX1-213ENST00000549414 AUHQ13825 339 aaKnown RBP16.85■□□□□ 0.29
CUX1-213ENST00000549414 MFSD10Q14728 455 aa16.85■□□□□ 0.29
CUX1-213ENST00000549414 ERMARDQ5T6L9 678 aa16.85■□□□□ 0.29
CUX1-213ENST00000549414 KCNT2Q6UVM3 1135 aa16.85■□□□□ 0.29
CUX1-213ENST00000549414 JOSD2Q8TAC2 188 aa16.85■□□□□ 0.29
CUX1-213ENST00000549414 FAM96AQ9H5X1 160 aa16.85■□□□□ 0.29
CUX1-213ENST00000549414 DMAC2Q9NW81 257 aa16.85■□□□□ 0.29
CUX1-213ENST00000549414 HACD3Q9P035 362 aa16.85■□□□□ 0.29
CUX1-213ENST00000549414 WDR3Q9UNX4 943 aaKnown RBP eCLIP16.85■□□□□ 0.29
CUX1-213ENST00000549414 KLRG2A4D1S0 409 aaPredicted RBP16.84■□□□□ 0.29
CUX1-213ENST00000549414 SDR42E2A6NKP2 422 aa16.84■□□□□ 0.29
CUX1-213ENST00000549414 FANCGO15287 622 aa16.84■□□□□ 0.29
CUX1-213ENST00000549414 DGKIO75912 1065 aa16.84■□□□□ 0.29
CUX1-213ENST00000549414 TPH1P17752 444 aa16.84■□□□□ 0.29
CUX1-213ENST00000549414 SLC26A11Q86WA9 606 aa16.84■□□□□ 0.29
CUX1-213ENST00000549414 TCP10LQ8TDR4 215 aa16.84■□□□□ 0.29
CUX1-213ENST00000549414 ARHGAP28Q9P2N2 729 aa16.84■□□□□ 0.29
CUX1-213ENST00000549414 ENO3P13929 434 aaPredicted RBP16.84■□□□□ 0.29
CUX1-213ENST00000549414 TNFRSF8P28908 595 aa16.84■□□□□ 0.29
CUX1-213ENST00000549414 POLE2P56282 527 aa16.84■□□□□ 0.29
CUX1-213ENST00000549414 YWHAZP63104 245 aaKnown RBP16.84■□□□□ 0.29
CUX1-213ENST00000549414 PPIL2Q13356 520 aa16.84■□□□□ 0.29
CUX1-213ENST00000549414 PRPF39Q86UA1 669 aaKnown RBP16.84■□□□□ 0.29
CUX1-213ENST00000549414 ELMOD1Q8N336 334 aa16.84■□□□□ 0.29
CUX1-213ENST00000549414 MIPOL1Q8TD10 442 aa16.84■□□□□ 0.29
CUX1-213ENST00000549414 EFHD1Q9BUP0 239 aa16.84■□□□□ 0.29
CUX1-213ENST00000549414 LMNAP02545 664 aaKnown RBP16.84■□□□□ 0.29
CUX1-213ENST00000549414 SOX11P35716 441 aa16.84■□□□□ 0.29
CUX1-213ENST00000549414 RTP1P59025 263 aa16.84■□□□□ 0.29
CUX1-213ENST00000549414 AGGF1Q8N302 714 aaeCLIP16.84■□□□□ 0.292e-7■■■■■ 57.8
CUX1-213ENST00000549414 TINF2Q9BSI4 451 aa16.84■□□□□ 0.29
CUX1-213ENST00000549414 NDE1Q9NXR1 346 aa16.84■□□□□ 0.29
CUX1-213ENST00000549414 SUN2Q9UH99 717 aa16.84■□□□□ 0.29
CUX1-213ENST00000549414 AFF4Q9UHB7 1163 aaKnown RBP16.84■□□□□ 0.29
CUX1-213ENST00000549414 BAG5Q9UL15 447 aa16.84■□□□□ 0.29
CUX1-213ENST00000549414 ZNF214Q9UL59 606 aaPredicted RBP16.84■□□□□ 0.29
CUX1-213ENST00000549414 SLC8A2Q9UPR5 921 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms