RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 AVPR1AP37288 418 aa16.24■□□□□ 0.19
CUX1-211ENST00000546411 BCAT1P54687 386 aa16.24■□□□□ 0.19
CUX1-211ENST00000546411 ATPAF2Q8N5M1 289 aa16.24■□□□□ 0.19
CUX1-211ENST00000546411 IFT43Q96FT9 208 aa16.24■□□□□ 0.19
CUX1-211ENST00000546411 CPXM1Q96SM3 734 aa16.24■□□□□ 0.19
CUX1-211ENST00000546411 B3GNT5Q9BYG0 378 aa16.24■□□□□ 0.19
CUX1-211ENST00000546411 WDCPQ9H6R7 721 aa16.24■□□□□ 0.19
CUX1-211ENST00000546411 NDE1Q9NXR1 346 aa16.24■□□□□ 0.19
CUX1-211ENST00000546411 NUDT5Q9UKK9 219 aa16.24■□□□□ 0.19
CUX1-211ENST00000546411 LOC102724159A0A0B4J2E5 919 aa16.24■□□□□ 0.19
CUX1-211ENST00000546411 A0A1W2PPM1 405 aa16.24■□□□□ 0.19
CUX1-211ENST00000546411 C4BPAP04003 597 aaKnown RBP16.24■□□□□ 0.19
CUX1-211ENST00000546411 MCF2P10911 925 aa16.24■□□□□ 0.19
CUX1-211ENST00000546411 ENO3P13929 434 aaPredicted RBP16.24■□□□□ 0.19
CUX1-211ENST00000546411 ETFBP38117 255 aa16.24■□□□□ 0.19
CUX1-211ENST00000546411 KPNA2P52292 529 aaKnown RBP16.24■□□□□ 0.19
CUX1-211ENST00000546411 AQP5P55064 265 aa16.24■□□□□ 0.19
CUX1-211ENST00000546411 DPYSL3Q14195 570 aa16.24■□□□□ 0.19
CUX1-211ENST00000546411 PWP2Q15269 919 aaKnown RBP16.24■□□□□ 0.19
CUX1-211ENST00000546411 UNC45BQ8IWX7 931 aa16.24■□□□□ 0.19
CUX1-211ENST00000546411 TRIM56Q9BRZ2 755 aaKnown RBP16.24■□□□□ 0.19
CUX1-211ENST00000546411 ASB7Q9H672 318 aa16.24■□□□□ 0.19
CUX1-211ENST00000546411 TRPM3Q9HCF6 1732 aaPredicted RBP16.24■□□□□ 0.19
CUX1-211ENST00000546411 ZNF536O15090 1300 aa16.24■□□□□ 0.19
CUX1-211ENST00000546411 SIGLEC16A6NMB1 481 aa16.24■□□□□ 0.19
CUX1-211ENST00000546411 BEX3Q00994 111 aa16.24■□□□□ 0.19
CUX1-211ENST00000546411 HIC1Q14526 733 aa16.24■□□□□ 0.19
CUX1-211ENST00000546411 PDK2Q15119 407 aa16.24■□□□□ 0.19
CUX1-211ENST00000546411 COLGALT1Q8NBJ5 622 aa16.24■□□□□ 0.19
CUX1-211ENST00000546411 XAB2Q9HCS7 855 aaKnown RBP16.24■□□□□ 0.19
CUX1-211ENST00000546411 KRT82Q9NSB4 513 aa16.24■□□□□ 0.19
CUX1-211ENST00000546411 BTBD7Q9P203 1132 aa16.24■□□□□ 0.19
CUX1-211ENST00000546411 SLC24A2Q9UI40 661 aa16.24■□□□□ 0.19
CUX1-211ENST00000546411 TKTL1P51854 596 aa16.23■□□□□ 0.19
CUX1-211ENST00000546411 KCNJ2P63252 427 aa16.23■□□□□ 0.19
CUX1-211ENST00000546411 PHF13Q86YI8 300 aaPredicted RBP16.23■□□□□ 0.19
CUX1-211ENST00000546411 TTC8Q8TAM2 541 aa16.23■□□□□ 0.19
CUX1-211ENST00000546411 NSL1Q96IY1 281 aa16.23■□□□□ 0.19
CUX1-211ENST00000546411 KIAA1257Q9ULG3 409 aa16.23■□□□□ 0.19
CUX1-211ENST00000546411 ANGPTL3Q9Y5C1 460 aa16.23■□□□□ 0.19
CUX1-211ENST00000546411 TMEM191CA6NGB0 347 aa16.23■□□□□ 0.19
CUX1-211ENST00000546411 APOC4-APOC2K7ER74 178 aa16.23■□□□□ 0.19
CUX1-211ENST00000546411 APOC2P02655 101 aa16.23■□□□□ 0.19
CUX1-211ENST00000546411 ELF1P32519 619 aa16.23■□□□□ 0.19
CUX1-211ENST00000546411 MIB1Q86YT6 1006 aa16.23■□□□□ 0.19
CUX1-211ENST00000546411 DEFB106AQ8N104 65 aa16.23■□□□□ 0.19
CUX1-211ENST00000546411 ZNF516Q92618 1163 aa16.23■□□□□ 0.19
CUX1-211ENST00000546411 RMDN1Q96DB5 314 aa16.23■□□□□ 0.19
CUX1-211ENST00000546411 RNPEPQ9H4A4 650 aa16.23■□□□□ 0.19
CUX1-211ENST00000546411 PPCSQ9HAB8 311 aa16.23■□□□□ 0.19
CUX1-211ENST00000546411 MTO1Q9Y2Z2 717 aaKnown RBP16.23■□□□□ 0.19
CUX1-211ENST00000546411 NFASCO94856 1347 aa16.23■□□□□ 0.19
CUX1-211ENST00000546411 CXCL11O14625 94 aa16.23■□□□□ 0.19
CUX1-211ENST00000546411 SPRP35270 261 aaPredicted RBP16.23■□□□□ 0.19
CUX1-211ENST00000546411 SERPINB9P50453 376 aa16.23■□□□□ 0.19
CUX1-211ENST00000546411 FOXD4Q12950 439 aaPredicted RBP16.23■□□□□ 0.19
CUX1-211ENST00000546411 DCAF4L1Q3SXM0 396 aa16.23■□□□□ 0.19
CUX1-211ENST00000546411 SPOCK2Q92563 424 aa16.23■□□□□ 0.19
CUX1-211ENST00000546411 ZNF75CPQ92670 426 aaPredicted RBP16.23■□□□□ 0.19
CUX1-211ENST00000546411 USP6NLQ92738 828 aa16.23■□□□□ 0.19
CUX1-211ENST00000546411 RXFP1Q9HBX9 757 aa16.23■□□□□ 0.19
CUX1-211ENST00000546411 MROH7Q68CQ1 1323 aa16.22■□□□□ 0.19
CUX1-211ENST00000546411 hCG_1818297A0A087WSY0 165 aa16.22■□□□□ 0.19
CUX1-211ENST00000546411 ARHGEF37A1IGU5 675 aa16.22■□□□□ 0.19
CUX1-211ENST00000546411 CLGNO14967 610 aa16.22■□□□□ 0.19
CUX1-211ENST00000546411 POMCP01189 267 aa16.22■□□□□ 0.19
CUX1-211ENST00000546411 CCND1P24385 295 aa16.22■□□□□ 0.19
CUX1-211ENST00000546411 CDC25CP30307 473 aa16.22■□□□□ 0.19
CUX1-211ENST00000546411 THPOP40225 353 aa16.22■□□□□ 0.19
CUX1-211ENST00000546411 EFTUD2Q15029 972 aaKnown RBP eCLIP16.22■□□□□ 0.19
CUX1-211ENST00000546411 C16orf46Q6P387 395 aa16.22■□□□□ 0.19
CUX1-211ENST00000546411 PLEKHH3Q7Z736 793 aa16.22■□□□□ 0.19
CUX1-211ENST00000546411 TFAP2BQ92481 460 aa16.22■□□□□ 0.19
CUX1-211ENST00000546411 BHMTQ93088 406 aa16.22■□□□□ 0.19
CUX1-211ENST00000546411 SERPINI1Q99574 410 aa16.22■□□□□ 0.19
CUX1-211ENST00000546411 ZNF541Q9H0D2 1346 aa16.22■□□□□ 0.19
CUX1-211ENST00000546411 LMNAP02545 664 aaKnown RBP16.22■□□□□ 0.19
CUX1-211ENST00000546411 ARF4P18085 180 aaPredicted RBP16.22■□□□□ 0.19
CUX1-211ENST00000546411 KCNA4P22459 653 aa16.22■□□□□ 0.19
CUX1-211ENST00000546411 OR1G1P47890 313 aa16.22■□□□□ 0.19
CUX1-211ENST00000546411 YWHAHQ04917 246 aaPredicted RBP16.22■□□□□ 0.19
CUX1-211ENST00000546411 FAM183BPQ6ZVS7 135 aa16.22■□□□□ 0.19
CUX1-211ENST00000546411 TMEM120AQ9BXJ8 343 aa16.22■□□□□ 0.19
CUX1-211ENST00000546411 ATXN3LQ9H3M9 355 aa16.22■□□□□ 0.19
CUX1-211ENST00000546411 SDR42E2A6NKP2 422 aa16.22■□□□□ 0.19
CUX1-211ENST00000546411 TAC1P20366 129 aa16.22■□□□□ 0.19
CUX1-211ENST00000546411 SERPINB3P29508 390 aa16.22■□□□□ 0.19
CUX1-211ENST00000546411 ATICP31939 592 aa16.22■□□□□ 0.19
CUX1-211ENST00000546411 Q9H521 79 aa16.22■□□□□ 0.19
CUX1-211ENST00000546411 DHX33Q9H6R0 707 aaKnown RBP16.22■□□□□ 0.19
CUX1-211ENST00000546411 ATRNL1Q5VV63 1379 aa16.22■□□□□ 0.19
CUX1-211ENST00000546411 GOLGA8QA0A0J9YX86 632 aa16.21■□□□□ 0.19
CUX1-211ENST00000546411 GOLGA8OA6NCC3 632 aa16.21■□□□□ 0.19
CUX1-211ENST00000546411 GOLGA8NF8WBI6 632 aa16.21■□□□□ 0.19
CUX1-211ENST00000546411 NOL3O60936 208 aaKnown RBP16.21■□□□□ 0.19
CUX1-211ENST00000546411 APOEP02649 317 aa16.21■□□□□ 0.19
CUX1-211ENST00000546411 CD48P09326 243 aa16.21■□□□□ 0.19
CUX1-211ENST00000546411 PCSK1P29120 753 aa16.21■□□□□ 0.19
CUX1-211ENST00000546411 MLH1P40692 756 aa16.21■□□□□ 0.19
CUX1-211ENST00000546411 NRLP54845 237 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms