RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 SNX30Q5VWJ9 437 aa13.65□□□□□ -0.22
USP28-212ENST00000544750 LARP1BQ659C4 914 aaKnown RBP13.65□□□□□ -0.22
USP28-212ENST00000544750 GPD1LQ8N335 351 aa13.65□□□□□ -0.22
USP28-212ENST00000544750 NAT16Q8N8M0 369 aa13.65□□□□□ -0.22
USP28-212ENST00000544750 WBP2Q969T9 261 aa13.65□□□□□ -0.22
USP28-212ENST00000544750 ANKRD36BP1Q96IX9 119 aa13.65□□□□□ -0.22
USP28-212ENST00000544750 EPSTI1Q96J88 318 aa13.65□□□□□ -0.22
USP28-212ENST00000544750 SLITRK1Q96PX8 696 aa13.65□□□□□ -0.22
USP28-212ENST00000544750 MRPL45Q9BRJ2 306 aaKnown RBP13.65□□□□□ -0.22
USP28-212ENST00000544750 PCIF1Q9H4Z3 704 aa13.65□□□□□ -0.22
USP28-212ENST00000544750 STK17AQ9UEE5 414 aa13.65□□□□□ -0.22
USP28-212ENST00000544750 HELZ2Q9BYK8 2649 aaKnown RBP13.64□□□□□ -0.23
USP28-212ENST00000544750 H3BQV1 296 aa13.64□□□□□ -0.23
USP28-212ENST00000544750 GREM1O60565 184 aa13.64□□□□□ -0.23
USP28-212ENST00000544750 CBFA2T3O75081 653 aa13.64□□□□□ -0.23
USP28-212ENST00000544750 ZNF217O75362 1048 aa13.64□□□□□ -0.23
USP28-212ENST00000544750 TACC1O75410 805 aa13.64□□□□□ -0.23
USP28-212ENST00000544750 GCNT3O95395 438 aa13.64□□□□□ -0.23
USP28-212ENST00000544750 BMP15O95972 392 aa13.64□□□□□ -0.23
USP28-212ENST00000544750 ABL1P00519 1130 aa13.64□□□□□ -0.23
USP28-212ENST00000544750 FAM163BP0C2L3 166 aa13.64□□□□□ -0.23
USP28-212ENST00000544750 NDUFV2P19404 249 aa13.64□□□□□ -0.23
USP28-212ENST00000544750 COL28A1Q2UY09 1125 aa13.64□□□□□ -0.23
USP28-212ENST00000544750 MDH1BQ5I0G3 518 aa13.64□□□□□ -0.23
USP28-212ENST00000544750 TDRD10Q5VZ19 366 aaKnown RBP13.64□□□□□ -0.23
USP28-212ENST00000544750 GLRX5Q86SX6 157 aa13.64□□□□□ -0.23
USP28-212ENST00000544750 SLCO6A1Q86UG4 719 aa13.64□□□□□ -0.23
USP28-212ENST00000544750 BBS7Q8IWZ6 715 aa13.64□□□□□ -0.23
USP28-212ENST00000544750 TRIML1Q8N9V2 468 aa13.64□□□□□ -0.23
USP28-212ENST00000544750 RASSF8Q8NHQ8 419 aa13.64□□□□□ -0.23
USP28-212ENST00000544750 OVCA2Q8WZ82 227 aa13.64□□□□□ -0.23
USP28-212ENST00000544750 INTS4Q96HW7 963 aaKnown RBP13.64□□□□□ -0.23
USP28-212ENST00000544750 HSPA12BQ96MM6 686 aa13.64□□□□□ -0.23
USP28-212ENST00000544750 BBC3Q96PG8 261 aaPredicted RBP13.64□□□□□ -0.23
USP28-212ENST00000544750 ACOX2Q99424 681 aa13.64□□□□□ -0.23
USP28-212ENST00000544750 GABRG3Q99928 467 aa13.64□□□□□ -0.23
USP28-212ENST00000544750 ZNF518BQ9C0D4 1074 aa13.64□□□□□ -0.23
USP28-212ENST00000544750 CD93Q9NPY3 652 aa13.64□□□□□ -0.23
USP28-212ENST00000544750 SPHK2Q9NRA0 654 aa13.64□□□□□ -0.23
USP28-212ENST00000544750 IL37Q9NZH6 218 aa13.64□□□□□ -0.23
USP28-212ENST00000544750 DEC1Q9P2X7 70 aa13.64□□□□□ -0.23
USP28-212ENST00000544750 PCDHB13Q9Y5F0 798 aa13.64□□□□□ -0.23
USP28-212ENST00000544750 TP53BP1Q12888 1972 aaPredicted RBP13.63□□□□□ -0.23
USP28-212ENST00000544750 NUMA1Q14980 2115 aa13.63□□□□□ -0.23
USP28-212ENST00000544750 FAM92AA1XBS5 289 aa13.63□□□□□ -0.23
USP28-212ENST00000544750 ZDHHC11BP0C7U3 371 aa13.63□□□□□ -0.23
USP28-212ENST00000544750 PTPN1P18031 435 aaKnown RBP13.63□□□□□ -0.23
USP28-212ENST00000544750 GNL1P36915 607 aaPredicted RBP13.63□□□□□ -0.23
USP28-212ENST00000544750 WASP42768 502 aa13.63□□□□□ -0.23
USP28-212ENST00000544750 ALCAMQ13740 583 aa13.63□□□□□ -0.23
USP28-212ENST00000544750 SF3A1Q15459 793 aaKnown RBP13.63□□□□□ -0.23
USP28-212ENST00000544750 C10orf76Q5T2E6 689 aa13.63□□□□□ -0.23
USP28-212ENST00000544750 EGFLAMQ63HQ2 1017 aa13.63□□□□□ -0.23
USP28-212ENST00000544750 TMEM25Q86YD3 366 aa13.63□□□□□ -0.23
USP28-212ENST00000544750 CBWD2Q8IUF1 395 aa13.63□□□□□ -0.23
USP28-212ENST00000544750 NAXDQ8IW45 347 aa13.63□□□□□ -0.23
USP28-212ENST00000544750 NUP93Q8N1F7 819 aa13.63□□□□□ -0.23
USP28-212ENST00000544750 PNPLA1Q8N8W4 532 aa13.63□□□□□ -0.23
USP28-212ENST00000544750 IPO4Q8TEX9 1081 aaKnown RBP13.63□□□□□ -0.23
USP28-212ENST00000544750 B3GNT5Q9BYG0 378 aa13.63□□□□□ -0.23
USP28-212ENST00000544750 ELOVL4Q9GZR5 314 aa13.63□□□□□ -0.23
USP28-212ENST00000544750 DPEP3Q9H4B8 488 aa13.63□□□□□ -0.23
USP28-212ENST00000544750 CCDC86Q9H6F5 360 aaKnown RBP13.63□□□□□ -0.23
USP28-212ENST00000544750 CYP8B1Q9UNU6 501 aa13.63□□□□□ -0.23
USP28-212ENST00000544750 KNTC1P50748 2209 aa13.63□□□□□ -0.23
USP28-212ENST00000544750 TULP1O00294 542 aaPredicted RBP13.62□□□□□ -0.23
USP28-212ENST00000544750 CLDN5O00501 218 aa13.62□□□□□ -0.23
USP28-212ENST00000544750 KIAA0391O15091 583 aaKnown RBP13.62□□□□□ -0.23
USP28-212ENST00000544750 PRPF6O94906 941 aaKnown RBP13.62□□□□□ -0.23
USP28-212ENST00000544750 DKK1O94907 266 aa13.62□□□□□ -0.23
USP28-212ENST00000544750 CST3P01034 146 aaPredicted RBP13.62□□□□□ -0.23
USP28-212ENST00000544750 TNNC2P02585 160 aa13.62□□□□□ -0.23
USP28-212ENST00000544750 SYT1P21579 422 aa13.62□□□□□ -0.23
USP28-212ENST00000544750 YWHAQP27348 245 aa13.62□□□□□ -0.23
USP28-212ENST00000544750 TUBP50607 506 aa13.62□□□□□ -0.23
USP28-212ENST00000544750 SURF1Q15526 300 aa13.62□□□□□ -0.23
USP28-212ENST00000544750 DUOXA2Q1HG44 320 aa13.62□□□□□ -0.23
USP28-212ENST00000544750 PREPLQ4J6C6 727 aaPredicted RBP13.62□□□□□ -0.23
USP28-212ENST00000544750 HECTD3Q5T447 861 aa13.62□□□□□ -0.23
USP28-212ENST00000544750 TOGARAM2Q6ZUX3 1019 aa13.62□□□□□ -0.23
USP28-212ENST00000544750 HS2ST1Q7LGA3 356 aa13.62□□□□□ -0.23
USP28-212ENST00000544750 TRAPPC11Q7Z392 1133 aa13.62□□□□□ -0.23
USP28-212ENST00000544750 WDR49Q8IV35 697 aa13.62□□□□□ -0.23
USP28-212ENST00000544750 SYCP3Q8IZU3 236 aa13.62□□□□□ -0.23
USP28-212ENST00000544750 PDZD8Q8NEN9 1154 aa13.62□□□□□ -0.23
USP28-212ENST00000544750 MDM1Q8TC05 714 aa13.62□□□□□ -0.23
USP28-212ENST00000544750 MMS19Q96T76 1030 aa13.62□□□□□ -0.23
USP28-212ENST00000544750 FAM124BQ9H5Z6 455 aaPredicted RBP13.62□□□□□ -0.23
USP28-212ENST00000544750 CCSER2Q9H7U1 834 aa13.62□□□□□ -0.23
USP28-212ENST00000544750 FOXD4L1Q9NU39 408 aa13.62□□□□□ -0.23
USP28-212ENST00000544750 KIAA1522Q9P206 1035 aaPredicted RBP13.62□□□□□ -0.23
USP28-212ENST00000544750 DKK4Q9UBT3 224 aa13.62□□□□□ -0.23
USP28-212ENST00000544750 SUSD2Q9UGT4 822 aa13.62□□□□□ -0.23
USP28-212ENST00000544750 CHORDC1Q9UHD1 332 aaPredicted RBP13.62□□□□□ -0.23
USP28-212ENST00000544750 ZNF233A6NK53 670 aa13.61□□□□□ -0.23
USP28-212ENST00000544750 PRRT4C9JH25 899 aa13.61□□□□□ -0.23
USP28-212ENST00000544750 CACNG3O60359 315 aa13.61□□□□□ -0.23
USP28-212ENST00000544750 RTN3O95197 1032 aaPredicted RBP13.61□□□□□ -0.23
USP28-212ENST00000544750 HOXD13P35453 343 aa13.61□□□□□ -0.23
USP28-212ENST00000544750 IFRD2Q12894 506 aaPredicted RBP13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms