RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 GCLMP48507 274 aa13.87□□□□□ -0.19
RTN3-213ENST00000543552 LIMK1P53667 647 aa13.87□□□□□ -0.19
RTN3-213ENST00000543552 MAP3K7CLP57077 242 aa13.87□□□□□ -0.19
RTN3-213ENST00000543552 ADAM9Q13443 819 aa13.87□□□□□ -0.19
RTN3-213ENST00000543552 PLK5Q496M5 336 aa13.87□□□□□ -0.19
RTN3-213ENST00000543552 IL31Q6EBC2 164 aa13.87□□□□□ -0.19
RTN3-213ENST00000543552 SPOPLQ6IQ16 392 aa13.87□□□□□ -0.19
RTN3-213ENST00000543552 TRMT11Q7Z4G4 463 aaKnown RBP13.87□□□□□ -0.19
RTN3-213ENST00000543552 TADA2BQ86TJ2 420 aa13.87□□□□□ -0.19
RTN3-213ENST00000543552 FAXDC2Q96IV6 333 aa13.87□□□□□ -0.19
RTN3-213ENST00000543552 HNRNPABQ99729 332 aaKnown RBP13.87□□□□□ -0.19
RTN3-213ENST00000543552 SMOQ99835 787 aa13.87□□□□□ -0.19
RTN3-213ENST00000543552 GTPBP4Q9BZE4 634 aaKnown RBP13.87□□□□□ -0.19
RTN3-213ENST00000543552 FAM124BQ9H5Z6 455 aaPredicted RBP13.87□□□□□ -0.19
RTN3-213ENST00000543552 CCSER2Q9H7U1 834 aa13.87□□□□□ -0.19
RTN3-213ENST00000543552 TMEM8AQ9HCN3 771 aa13.87□□□□□ -0.19
RTN3-213ENST00000543552 VPS45Q9NRW7 570 aa13.87□□□□□ -0.19
RTN3-213ENST00000543552 HMGXB4Q9UGU5 601 aa13.87□□□□□ -0.19
RTN3-213ENST00000543552 LSM7Q9UK45 103 aaKnown RBP13.87□□□□□ -0.19
RTN3-213ENST00000543552 MAPK8IP1Q9UQF2 711 aa13.87□□□□□ -0.19
RTN3-213ENST00000543552 ZDHHC9Q9Y397 364 aa13.87□□□□□ -0.19
RTN3-213ENST00000543552 PCDHA5Q9Y5H7 936 aa13.87□□□□□ -0.19
RTN3-213ENST00000543552 ATG2BQ96BY7 2078 aa13.86□□□□□ -0.19
RTN3-213ENST00000543552 DCDC2BA2VCK2 349 aa13.86□□□□□ -0.19
RTN3-213ENST00000543552 GOLGA6L4A6NEF3 574 aa13.86□□□□□ -0.19
RTN3-213ENST00000543552 SCAMP3O14828 347 aaKnown RBP13.86□□□□□ -0.19
RTN3-213ENST00000543552 HOXC11O43248 304 aaPredicted RBP13.86□□□□□ -0.19
RTN3-213ENST00000543552 ZNF202O95125 648 aa13.86□□□□□ -0.19
RTN3-213ENST00000543552 TRIM49P0CI25 452 aa13.86□□□□□ -0.19
RTN3-213ENST00000543552 TRIM49CP0CI26 452 aa13.86□□□□□ -0.19
RTN3-213ENST00000543552 EPB41P11171 864 aaKnown RBP13.86□□□□□ -0.19
RTN3-213ENST00000543552 ADORA2BP29275 332 aa13.86□□□□□ -0.19
RTN3-213ENST00000543552 HOXC13P31276 330 aa13.86□□□□□ -0.19
RTN3-213ENST00000543552 GBP1P32455 592 aa13.86□□□□□ -0.19
RTN3-213ENST00000543552 MPLP40238 635 aa13.86□□□□□ -0.19
RTN3-213ENST00000543552 TNFRSF4P43489 277 aa13.86□□□□□ -0.19
RTN3-213ENST00000543552 ORC1Q13415 861 aa13.86□□□□□ -0.19
RTN3-213ENST00000543552 GAB4Q2WGN9 574 aa13.86□□□□□ -0.19
RTN3-213ENST00000543552 EOGTQ5NDL2 527 aa13.86□□□□□ -0.19
RTN3-213ENST00000543552 LY6G5CQ5SRR4 150 aa13.86□□□□□ -0.19
RTN3-213ENST00000543552 C1orf220Q5T0J3 134 aa13.86□□□□□ -0.19
RTN3-213ENST00000543552 KRT39Q6A163 491 aa13.86□□□□□ -0.19
RTN3-213ENST00000543552 RHBDF2Q6PJF5 856 aa13.86□□□□□ -0.19
RTN3-213ENST00000543552 C12orf29Q8N999 325 aa13.86□□□□□ -0.19
RTN3-213ENST00000543552 KCNV2Q8TDN2 545 aa13.86□□□□□ -0.19
RTN3-213ENST00000543552 TAS1R2Q8TE23 839 aa13.86□□□□□ -0.19
RTN3-213ENST00000543552 CYFIP2Q96F07 1278 aa13.86□□□□□ -0.19
RTN3-213ENST00000543552 ZFRQ96KR1 1074 aaKnown RBP13.86□□□□□ -0.19
RTN3-213ENST00000543552 SPACA7Q96KW9 195 aa13.86□□□□□ -0.19
RTN3-213ENST00000543552 CNOT6LQ96LI5 555 aaKnown RBP13.86□□□□□ -0.19
RTN3-213ENST00000543552 CDK5RAP1Q96SZ6 601 aaKnown RBP13.86□□□□□ -0.19
RTN3-213ENST00000543552 POLMQ9NP87 494 aaPredicted RBP13.86□□□□□ -0.19
RTN3-213ENST00000543552 SCML2Q9UQR0 700 aa13.86□□□□□ -0.19
RTN3-213ENST00000543552 MYO16Q9Y6X6 1858 aa13.86□□□□□ -0.19
RTN3-213ENST00000543552 CETN3O15182 167 aa13.85□□□□□ -0.19
RTN3-213ENST00000543552 CD58P19256 250 aa13.85□□□□□ -0.19
RTN3-213ENST00000543552 ATP5C1P36542 298 aaKnown RBP13.85□□□□□ -0.19
RTN3-213ENST00000543552 PSEN1P49768 467 aa13.85□□□□□ -0.19
RTN3-213ENST00000543552 MXI1P50539 228 aa13.85□□□□□ -0.19
RTN3-213ENST00000543552 SLC8A3P57103 927 aa13.85□□□□□ -0.19
RTN3-213ENST00000543552 KDSRQ06136 332 aa13.85□□□□□ -0.19
RTN3-213ENST00000543552 PPP3CAQ08209 521 aa13.85□□□□□ -0.19
RTN3-213ENST00000543552 BYSLQ13895 437 aaKnown RBP13.85□□□□□ -0.19
RTN3-213ENST00000543552 BECN1Q14457 450 aa13.85□□□□□ -0.19
RTN3-213ENST00000543552 CRY1Q16526 586 aa13.85□□□□□ -0.19
RTN3-213ENST00000543552 PLA2G2CQ5R387 149 aa13.85□□□□□ -0.19
RTN3-213ENST00000543552 ANO7Q6IWH7 933 aa13.85□□□□□ -0.19
RTN3-213ENST00000543552 KLHDC10Q6PID8 442 aa13.85□□□□□ -0.19
RTN3-213ENST00000543552 CLEC20AQ6ZU45 233 aa13.85□□□□□ -0.19
RTN3-213ENST00000543552 RASSF3Q86WH2 238 aa13.85□□□□□ -0.19
RTN3-213ENST00000543552 ZMIZ2Q8NF64 920 aa13.85□□□□□ -0.19
RTN3-213ENST00000543552 WHAMMQ8TF30 809 aa13.85□□□□□ -0.19
RTN3-213ENST00000543552 ELMO3Q96BJ8 720 aa13.85□□□□□ -0.19
RTN3-213ENST00000543552 TSG101Q99816 390 aa13.85□□□□□ -0.19
RTN3-213ENST00000543552 DUSP15Q9H1R2 295 aaPredicted RBP13.85□□□□□ -0.19
RTN3-213ENST00000543552 MMRN2Q9H8L6 949 aa13.85□□□□□ -0.19
RTN3-213ENST00000543552 CYLDQ9NQC7 956 aa13.85□□□□□ -0.19
RTN3-213ENST00000543552 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.85□□□□□ -0.191e-6■■■■■ 88.9
RTN3-213ENST00000543552 SPHK2Q9NRA0 654 aa13.85□□□□□ -0.19
RTN3-213ENST00000543552 POLR3BQ9NW08 1133 aaPredicted RBP13.85□□□□□ -0.19
RTN3-213ENST00000543552 DEC1Q9P2X7 70 aa13.85□□□□□ -0.19
RTN3-213ENST00000543552 HOOK1Q9UJC3 728 aaKnown RBP13.85□□□□□ -0.19
RTN3-213ENST00000543552 LAMA1P25391 3075 aa13.85□□□□□ -0.19
RTN3-213ENST00000543552 MYH10P35580 1976 aa13.85□□□□□ -0.19
RTN3-213ENST00000543552 SPTBN2O15020 2390 aa13.85□□□□□ -0.19
RTN3-213ENST00000543552 A0A0A0MRY4 1105 aa13.84□□□□□ -0.19
RTN3-213ENST00000543552 TBC1D3BA6NDS4 549 aa13.84□□□□□ -0.19
RTN3-213ENST00000543552 CILPO75339 1184 aa13.84□□□□□ -0.19
RTN3-213ENST00000543552 BEST1O76090 585 aa13.84□□□□□ -0.19
RTN3-213ENST00000543552 SMC2O95347 1197 aa13.84□□□□□ -0.19
RTN3-213ENST00000543552 KLF8O95600 359 aaPredicted RBP13.84□□□□□ -0.19
RTN3-213ENST00000543552 IRF1P10914 325 aa13.84□□□□□ -0.19
RTN3-213ENST00000543552 ACO1P21399 889 aaKnown RBP13.84□□□□□ -0.19
RTN3-213ENST00000543552 TIE1P35590 1138 aa13.84□□□□□ -0.19
RTN3-213ENST00000543552 SLC6A11P48066 632 aa13.84□□□□□ -0.19
RTN3-213ENST00000543552 CREB5Q02930 508 aa13.84□□□□□ -0.19
RTN3-213ENST00000543552 SF3A2Q15428 464 aaKnown RBP13.84□□□□□ -0.19
RTN3-213ENST00000543552 ANO4Q32M45 955 aa13.84□□□□□ -0.19
RTN3-213ENST00000543552 ZCWPW2Q504Y3 356 aa13.84□□□□□ -0.19
RTN3-213ENST00000543552 PPM1JQ5JR12 505 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms