RNA–Protein interactions for RNA: ENST00000533018.1

PCF11-206, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-206ENST00000533018 ASPAP45381 313 aa18.85■□□□□ 0.61
PCF11-206ENST00000533018 GCLMP48507 274 aa18.85■□□□□ 0.61
PCF11-206ENST00000533018 CREB5Q02930 508 aa18.85■□□□□ 0.61
PCF11-206ENST00000533018 USP39Q53GS9 565 aaKnown RBP18.85■□□□□ 0.61
PCF11-206ENST00000533018 PPM1JQ5JR12 505 aa18.85■□□□□ 0.61
PCF11-206ENST00000533018 LY6G5CQ5SRR4 150 aa18.85■□□□□ 0.61
PCF11-206ENST00000533018 BTBD8Q5XKL5 378 aa18.85■□□□□ 0.61
PCF11-206ENST00000533018 INTS8Q75QN2 995 aaKnown RBP18.85■□□□□ 0.61
PCF11-206ENST00000533018 CRYBG2Q8N1P7 616 aa18.85■□□□□ 0.61
PCF11-206ENST00000533018 SMOQ99835 787 aa18.85■□□□□ 0.61
PCF11-206ENST00000533018 ARHGEF4Q9NR80 690 aa18.85■□□□□ 0.61
PCF11-206ENST00000533018 TLR8Q9NR97 1041 aaKnown RBP18.85■□□□□ 0.61
PCF11-206ENST00000533018 MMP17Q9ULZ9 603 aa18.85■□□□□ 0.61
PCF11-206ENST00000533018 PCDHGA5Q9Y5G8 931 aa18.85■□□□□ 0.61
PCF11-206ENST00000533018 TPRP12270 2363 aaKnown RBP18.84■□□□□ 0.61
PCF11-206ENST00000533018 PALM2-AKAP2B1ALY0 433 aaPredicted RBP18.84■□□□□ 0.61
PCF11-206ENST00000533018 KLF8O95600 359 aaPredicted RBP18.84■□□□□ 0.61
PCF11-206ENST00000533018 CD58P19256 250 aa18.84■□□□□ 0.61
PCF11-206ENST00000533018 TUBP50607 506 aa18.84■□□□□ 0.61
PCF11-206ENST00000533018 MRPS21P82921 87 aaKnown RBP18.84■□□□□ 0.61
PCF11-206ENST00000533018 GAD2Q05329 585 aa18.84■□□□□ 0.61
PCF11-206ENST00000533018 DPYDQ12882 1025 aa18.84■□□□□ 0.61
PCF11-206ENST00000533018 ADAM9Q13443 819 aa18.84■□□□□ 0.61
PCF11-206ENST00000533018 ANO4Q32M45 955 aa18.84■□□□□ 0.61
PCF11-206ENST00000533018 C1orf220Q5T0J3 134 aa18.84■□□□□ 0.61
PCF11-206ENST00000533018 SNX30Q5VWJ9 437 aa18.84■□□□□ 0.61
PCF11-206ENST00000533018 C12orf40Q86WS4 652 aa18.84■□□□□ 0.61
PCF11-206ENST00000533018 SFTPA1Q8IWL2 248 aa18.84■□□□□ 0.61
PCF11-206ENST00000533018 FAM186BQ8IYM0 893 aa18.84■□□□□ 0.61
PCF11-206ENST00000533018 ALLCQ8N6M5 410 aa18.84■□□□□ 0.61
PCF11-206ENST00000533018 NAT16Q8N8M0 369 aa18.84■□□□□ 0.61
PCF11-206ENST00000533018 TXNDC5Q8NBS9 432 aaKnown RBP18.84■□□□□ 0.61
PCF11-206ENST00000533018 CCDC150Q8NCX0 1101 aa18.84■□□□□ 0.61
PCF11-206ENST00000533018 ZMIZ2Q8NF64 920 aa18.84■□□□□ 0.61
PCF11-206ENST00000533018 OTUB2Q96DC9 234 aa18.84■□□□□ 0.61
PCF11-206ENST00000533018 SCAND2PQ9GZW5 306 aaPredicted RBP18.84■□□□□ 0.61
PCF11-206ENST00000533018 VPS45Q9NRW7 570 aa18.84■□□□□ 0.61
PCF11-206ENST00000533018 NUP205Q92621 2012 aa18.83■□□□□ 0.61
PCF11-206ENST00000533018 TBC1D3BA6NDS4 549 aa18.83■□□□□ 0.6
PCF11-206ENST00000533018 TLR5O60602 858 aa18.83■□□□□ 0.6
PCF11-206ENST00000533018 ALDH1A2O94788 518 aa18.83■□□□□ 0.6
PCF11-206ENST00000533018 PSMC2P35998 433 aaKnown RBP18.83■□□□□ 0.6
PCF11-206ENST00000533018 EIF2DP41214 584 aaKnown RBP18.83■□□□□ 0.6
PCF11-206ENST00000533018 GRIA2P42262 883 aa18.83■□□□□ 0.6
PCF11-206ENST00000533018 MESP2Q0VG99 397 aa18.83■□□□□ 0.6
PCF11-206ENST00000533018 CRY1Q16526 586 aa18.83■□□□□ 0.6
PCF11-206ENST00000533018 KRBA2Q6ZNG9 492 aa18.83■□□□□ 0.6
PCF11-206ENST00000533018 BBS7Q8IWZ6 715 aa18.83■□□□□ 0.6
PCF11-206ENST00000533018 DDX1Q92499 740 aaKnown RBP18.83■□□□□ 0.6
PCF11-206ENST00000533018 CYFIP2Q96F07 1278 aa18.83■□□□□ 0.6
PCF11-206ENST00000533018 ZFRQ96KR1 1074 aaKnown RBP18.83■□□□□ 0.6
PCF11-206ENST00000533018 NT5C1AQ9BXI3 368 aa18.83■□□□□ 0.6
PCF11-206ENST00000533018 DNAI2Q9GZS0 605 aa18.83■□□□□ 0.6
PCF11-206ENST00000533018 CSNK1G1Q9HCP0 422 aa18.83■□□□□ 0.6
PCF11-206ENST00000533018 RXFP3Q9NSD7 469 aa18.83■□□□□ 0.6
PCF11-206ENST00000533018 IL37Q9NZH6 218 aa18.83■□□□□ 0.6
PCF11-206ENST00000533018 MAPK13O15264 365 aa18.82■□□□□ 0.6
PCF11-206ENST00000533018 TBX18O95935 607 aa18.82■□□□□ 0.6
PCF11-206ENST00000533018 ZDHHC11BP0C7U3 371 aa18.82■□□□□ 0.6
PCF11-206ENST00000533018 PPP3CAQ08209 521 aa18.82■□□□□ 0.6
PCF11-206ENST00000533018 PLA2G2CQ5R387 149 aa18.82■□□□□ 0.6
PCF11-206ENST00000533018 EMC10Q5UCC4 262 aa18.82■□□□□ 0.6
PCF11-206ENST00000533018 MDGA1Q8NFP4 955 aa18.82■□□□□ 0.6
PCF11-206ENST00000533018 TAS1R2Q8TE23 839 aa18.82■□□□□ 0.6
PCF11-206ENST00000533018 CCDC34Q96HJ3 373 aa18.82■□□□□ 0.6
PCF11-206ENST00000533018 TWNKQ96RR1 684 aa18.82■□□□□ 0.6
PCF11-206ENST00000533018 APOBEC3GQ9HC16 384 aaKnown RBP18.82■□□□□ 0.6
PCF11-206ENST00000533018 POLMQ9NP87 494 aaPredicted RBP18.82■□□□□ 0.6
PCF11-206ENST00000533018 ZDHHC4Q9NPG8 344 aa18.82■□□□□ 0.6
PCF11-206ENST00000533018 SPHK2Q9NRA0 654 aa18.82■□□□□ 0.6
PCF11-206ENST00000533018 BCCIPQ9P287 314 aaKnown RBP eCLIP18.82■□□□□ 0.6
PCF11-206ENST00000533018 FAM237AA0A1B0GTK4 181 aa18.81■□□□□ 0.6
PCF11-206ENST00000533018 FAM92AA1XBS5 289 aa18.81■□□□□ 0.6
PCF11-206ENST00000533018 SGK1O00141 431 aa18.81■□□□□ 0.6
PCF11-206ENST00000533018 ZNF202O95125 648 aa18.81■□□□□ 0.6
PCF11-206ENST00000533018 ACO1P21399 889 aaKnown RBP18.81■□□□□ 0.6
PCF11-206ENST00000533018 ATP5C1P36542 298 aaKnown RBP18.81■□□□□ 0.6
PCF11-206ENST00000533018 PGFP49763 221 aa18.81■□□□□ 0.6
PCF11-206ENST00000533018 GOLGA8FQ08AF8 430 aa18.81■□□□□ 0.6
PCF11-206ENST00000533018 GOLGA8DPQ0D2H9 430 aa18.81■□□□□ 0.6
PCF11-206ENST00000533018 NFIL3Q16649 462 aa18.81■□□□□ 0.6
PCF11-206ENST00000533018 PREPLQ4J6C6 727 aaPredicted RBP18.81■□□□□ 0.6
PCF11-206ENST00000533018 EOGTQ5NDL2 527 aa18.81■□□□□ 0.6
PCF11-206ENST00000533018 STPG1Q5TH74 334 aa18.81■□□□□ 0.6
PCF11-206ENST00000533018 TCEAL6Q6IPX3 200 aa18.81■□□□□ 0.6
PCF11-206ENST00000533018 TMEM92Q6UXU6 159 aa18.81■□□□□ 0.6
PCF11-206ENST00000533018 NUDT18Q6ZVK8 323 aa18.81■□□□□ 0.6
PCF11-206ENST00000533018 C11orf74Q86VG3 221 aa18.81■□□□□ 0.6
PCF11-206ENST00000533018 TMEM25Q86YD3 366 aa18.81■□□□□ 0.6
PCF11-206ENST00000533018 PGBD3Q8N328 593 aa18.81■□□□□ 0.6
PCF11-206ENST00000533018 GUF1Q8N442 669 aaKnown RBP18.81■□□□□ 0.6
PCF11-206ENST00000533018 IL17RCQ8NAC3 791 aa18.81■□□□□ 0.6
PCF11-206ENST00000533018 TCEAL3Q969E4 200 aa18.81■□□□□ 0.6
PCF11-206ENST00000533018 EEF2KMTQ96G04 330 aa18.81■□□□□ 0.6
PCF11-206ENST00000533018 CNOT6LQ96LI5 555 aaKnown RBP18.81■□□□□ 0.6
PCF11-206ENST00000533018 HNRNPABQ99729 332 aaKnown RBP18.81■□□□□ 0.6
PCF11-206ENST00000533018 NIF3L1Q9GZT8 377 aa18.81■□□□□ 0.6
PCF11-206ENST00000533018 GOLPH3LQ9H4A5 285 aa18.81■□□□□ 0.6
PCF11-206ENST00000533018 CYP3A43Q9HB55 503 aa18.81■□□□□ 0.6
PCF11-206ENST00000533018 GDPD2Q9HCC8 539 aa18.81■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms