RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 CHMP4AQ9BY43 222 aa4.79□□□□□ -1.64
CD44-235ENST00000532339 GLIS2Q9BZE0 524 aaPredicted RBP4.79□□□□□ -1.64
CD44-235ENST00000532339 TPSD1Q9BZJ3 242 aa4.79□□□□□ -1.64
CD44-235ENST00000532339 GPR35Q9HC97 309 aa4.79□□□□□ -1.64
CD44-235ENST00000532339 ETAA1Q9NY74 926 aa4.79□□□□□ -1.64
CD44-235ENST00000532339 ZNF180Q9UJW8 692 aa4.79□□□□□ -1.64
CD44-235ENST00000532339 TRIM17Q9Y577 477 aa4.79□□□□□ -1.64
CD44-235ENST00000532339 CACNA1BQ00975 2339 aa4.79□□□□□ -1.64
CD44-235ENST00000532339 ZFHX4Q86UP3 3567 aa4.79□□□□□ -1.64
CD44-235ENST00000532339 ADGRA2Q96PE1 1338 aa4.78□□□□□ -1.64
CD44-235ENST00000532339 USP42Q9H9J4 1324 aaKnown RBP4.78□□□□□ -1.64
CD44-235ENST00000532339 RFPL1O75677 317 aa4.78□□□□□ -1.64
CD44-235ENST00000532339 MAP4K4O95819 1239 aaPredicted RBP4.78□□□□□ -1.64
CD44-235ENST00000532339 TTLL1O95922 423 aa4.78□□□□□ -1.64
CD44-235ENST00000532339 RARBP10826 455 aa4.78□□□□□ -1.64
CD44-235ENST00000532339 ITGALP20701 1170 aa4.78□□□□□ -1.64
CD44-235ENST00000532339 ITPKBP27987 946 aa4.78□□□□□ -1.64
CD44-235ENST00000532339 PRDX5P30044 214 aa4.78□□□□□ -1.64
CD44-235ENST00000532339 GNALP38405 381 aa4.78□□□□□ -1.64
CD44-235ENST00000532339 EPS15P42566 896 aa4.78□□□□□ -1.64
CD44-235ENST00000532339 ZNF135P52742 658 aaPredicted RBP4.78□□□□□ -1.64
CD44-235ENST00000532339 SRSF4Q08170 494 aaKnown RBP4.78□□□□□ -1.64
CD44-235ENST00000532339 KIF22Q14807 665 aa4.78□□□□□ -1.64
CD44-235ENST00000532339 FAM109BQ6ICB4 259 aaPredicted RBP4.78□□□□□ -1.64
CD44-235ENST00000532339 C14orf80Q86SX3 495 aa4.78□□□□□ -1.64
CD44-235ENST00000532339 FAM90A1Q86YD7 464 aa4.78□□□□□ -1.64
CD44-235ENST00000532339 CCDC146Q8IYE0 955 aa4.78□□□□□ -1.64
CD44-235ENST00000532339 TCEAL8Q8IYN2 117 aa4.78□□□□□ -1.64
CD44-235ENST00000532339 PSD4Q8NDX1 1056 aa4.78□□□□□ -1.64
CD44-235ENST00000532339 MAFAQ8NHW3 353 aaPredicted RBP4.78□□□□□ -1.64
CD44-235ENST00000532339 HASPINQ8TF76 798 aa4.78□□□□□ -1.64
CD44-235ENST00000532339 JPH3Q8WXH2 748 aaPredicted RBP4.78□□□□□ -1.64
CD44-235ENST00000532339 ANKS1AQ92625 1134 aa4.78□□□□□ -1.64
CD44-235ENST00000532339 ZNF333Q96JL9 665 aa4.78□□□□□ -1.64
CD44-235ENST00000532339 WDCPQ9H6R7 721 aa4.78□□□□□ -1.64
CD44-235ENST00000532339 TCF7L1Q9HCS4 588 aa4.78□□□□□ -1.64
CD44-235ENST00000532339 SLAMF7Q9NQ25 335 aa4.78□□□□□ -1.64
CD44-235ENST00000532339 STAP2Q9UGK3 403 aa4.78□□□□□ -1.64
CD44-235ENST00000532339 PGAP2Q9UHJ9 254 aa4.78□□□□□ -1.64
CD44-235ENST00000532339 ZDHHC8Q9ULC8 765 aa4.78□□□□□ -1.64
CD44-235ENST00000532339 ST3GAL5Q9UNP4 418 aa4.78□□□□□ -1.64
CD44-235ENST00000532339 LUC7L2Q9Y383 392 aaKnown RBP4.78□□□□□ -1.64
CD44-235ENST00000532339 BDP1A6H8Y1 2624 aa4.78□□□□□ -1.64
CD44-235ENST00000532339 NCOR1O75376 2440 aa4.78□□□□□ -1.64
CD44-235ENST00000532339 MAP2P11137 1827 aaKnown RBP4.78□□□□□ -1.64
CD44-235ENST00000532339 ADGRB1O14514 1584 aa4.78□□□□□ -1.64
CD44-235ENST00000532339 CGNL1Q0VF96 1302 aa4.77□□□□□ -1.65
CD44-235ENST00000532339 LRRC14BA6NHZ5 514 aa4.77□□□□□ -1.65
CD44-235ENST00000532339 VWC2LB2RUY7 222 aa4.77□□□□□ -1.65
CD44-235ENST00000532339 ZRANB2O95218 330 aaKnown RBP eCLIP4.77□□□□□ -1.65
CD44-235ENST00000532339 GNAI2P04899 355 aa4.77□□□□□ -1.65
CD44-235ENST00000532339 RECQLP46063 649 aaPredicted RBP4.77□□□□□ -1.65
CD44-235ENST00000532339 ATXN1P54253 815 aaKnown RBP4.77□□□□□ -1.65
CD44-235ENST00000532339 SLC4A8Q2Y0W8 1093 aa4.77□□□□□ -1.65
CD44-235ENST00000532339 PLAC9Q5JTB6 97 aa4.77□□□□□ -1.65
CD44-235ENST00000532339 TMEM240Q5SV17 173 aa4.77□□□□□ -1.65
CD44-235ENST00000532339 KIAA1614Q5VZ46 1190 aa4.77□□□□□ -1.65
CD44-235ENST00000532339 FCRLBQ6BAA4 426 aa4.77□□□□□ -1.65
CD44-235ENST00000532339 TAF2Q6P1X5 1199 aa4.77□□□□□ -1.65
CD44-235ENST00000532339 AMIGO2Q86SJ2 522 aa4.77□□□□□ -1.65
CD44-235ENST00000532339 MAGEB6Q8N7X4 407 aa4.77□□□□□ -1.65
CD44-235ENST00000532339 TTC8Q8TAM2 541 aa4.77□□□□□ -1.65
CD44-235ENST00000532339 PIGBQ92521 554 aa4.77□□□□□ -1.65
CD44-235ENST00000532339 ZNF622Q969S3 477 aaKnown RBP eCLIP4.77□□□□□ -1.65
CD44-235ENST00000532339 FKBP10Q96AY3 582 aa4.77□□□□□ -1.65
CD44-235ENST00000532339 RGMAQ96B86 450 aa4.77□□□□□ -1.65
CD44-235ENST00000532339 CCDC136Q96JN2 1154 aa4.77□□□□□ -1.65
CD44-235ENST00000532339 ACTRT3Q9BYD9 372 aa4.77□□□□□ -1.65
CD44-235ENST00000532339 AMBRA1Q9C0C7 1298 aa4.77□□□□□ -1.65
CD44-235ENST00000532339 EHD3Q9NZN3 535 aa4.77□□□□□ -1.65
CD44-235ENST00000532339 IP6K2Q9UHH9 426 aa4.77□□□□□ -1.65
CD44-235ENST00000532339 FEZ2Q9UHY8 353 aaPredicted RBP4.77□□□□□ -1.65
CD44-235ENST00000532339 NOB1Q9ULX3 412 aaKnown RBP4.77□□□□□ -1.65
CD44-235ENST00000532339 PCDHA3Q9Y5H8 950 aa4.77□□□□□ -1.65
CD44-235ENST00000532339 RAD54BQ9Y620 910 aa4.77□□□□□ -1.65
CD44-235ENST00000532339 KIF7Q2M1P5 1343 aa4.76□□□□□ -1.65
CD44-235ENST00000532339 MAP3K19Q56UN5 1328 aa4.76□□□□□ -1.65
CD44-235ENST00000532339 MANSC4A6NHS7 340 aaPredicted RBP4.76□□□□□ -1.65
CD44-235ENST00000532339 PRSS29PA6NIE9 313 aa4.76□□□□□ -1.65
CD44-235ENST00000532339 SNUPNO95149 360 aaKnown RBP4.76□□□□□ -1.65
CD44-235ENST00000532339 PRKCGP05129 697 aa4.76□□□□□ -1.65
CD44-235ENST00000532339 RHOP08100 348 aa4.76□□□□□ -1.65
CD44-235ENST00000532339 NR2F6P10588 404 aa4.76□□□□□ -1.65
CD44-235ENST00000532339 PDCP20941 246 aa4.76□□□□□ -1.65
CD44-235ENST00000532339 CD6P30203 668 aa4.76□□□□□ -1.65
CD44-235ENST00000532339 ABCG1P45844 678 aa4.76□□□□□ -1.65
CD44-235ENST00000532339 HK3P52790 923 aa4.76□□□□□ -1.65
CD44-235ENST00000532339 TCF15Q12870 199 aa4.76□□□□□ -1.65
CD44-235ENST00000532339 MLC1Q15049 377 aa4.76□□□□□ -1.65
CD44-235ENST00000532339 CCSAPQ6IQ19 270 aaPredicted RBP4.76□□□□□ -1.65
CD44-235ENST00000532339 HEATR3Q7Z4Q2 680 aa4.76□□□□□ -1.65
CD44-235ENST00000532339 RASAL3Q86YV0 1011 aa4.76□□□□□ -1.65
CD44-235ENST00000532339 CPA6Q8N4T0 437 aa4.76□□□□□ -1.65
CD44-235ENST00000532339 RFKQ969G6 155 aa4.76□□□□□ -1.65
CD44-235ENST00000532339 C1orf43Q9BWL3 253 aa4.76□□□□□ -1.65
CD44-235ENST00000532339 TINAGL1Q9GZM7 467 aaPredicted RBP4.76□□□□□ -1.65
CD44-235ENST00000532339 SMOC2Q9H3U7 446 aa4.76□□□□□ -1.65
CD44-235ENST00000532339 GBA2Q9HCG7 927 aaPredicted RBP4.76□□□□□ -1.65
CD44-235ENST00000532339 SRP68Q9UHB9 627 aaKnown RBP4.76□□□□□ -1.65
CD44-235ENST00000532339 ZBTB32Q9Y2Y4 487 aaPredicted RBP4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms