RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 PLAURQ03405 335 aa7.84□□□□□ -1.15
CD44-228ENST00000528455 ARID5AQ03989 594 aa7.84□□□□□ -1.15
CD44-228ENST00000528455 UBE3AQ05086 875 aa7.84□□□□□ -1.15
CD44-228ENST00000528455 MAPRE1Q15691 268 aaKnown RBP7.84□□□□□ -1.15
CD44-228ENST00000528455 AAK1Q2M2I8 961 aa7.84□□□□□ -1.15
CD44-228ENST00000528455 KIAA0319Q5VV43 1072 aa7.84□□□□□ -1.15
CD44-228ENST00000528455 ARHGAP17Q68EM7 881 aa7.84□□□□□ -1.15
CD44-228ENST00000528455 OVOS1Q6IE37 1185 aa7.84□□□□□ -1.15
CD44-228ENST00000528455 PPP1R2P3Q6NXS1 205 aa7.84□□□□□ -1.15
CD44-228ENST00000528455 ANKS3Q6ZW76 656 aa7.84□□□□□ -1.15
CD44-228ENST00000528455 SLC47A2Q86VL8 602 aa7.84□□□□□ -1.15
CD44-228ENST00000528455 TMEM139Q8IV31 216 aa7.84□□□□□ -1.15
CD44-228ENST00000528455 SVOPQ8N4V2 548 aa7.84□□□□□ -1.15
CD44-228ENST00000528455 RBBP8NLQ8NC74 664 aaPredicted RBP7.84□□□□□ -1.15
CD44-228ENST00000528455 MYCBPAPQ8TBZ2 947 aa7.84□□□□□ -1.15
CD44-228ENST00000528455 ALKBH8Q96BT7 664 aaKnown RBP7.84□□□□□ -1.15
CD44-228ENST00000528455 BTBD6Q96KE9 485 aa7.84□□□□□ -1.15
CD44-228ENST00000528455 AGPAT1Q99943 283 aa7.84□□□□□ -1.15
CD44-228ENST00000528455 SYT11Q9BT88 431 aa7.84□□□□□ -1.15
CD44-228ENST00000528455 TTPALQ9BTX7 342 aa7.84□□□□□ -1.15
CD44-228ENST00000528455 UBXN6Q9BZV1 441 aa7.84□□□□□ -1.15
CD44-228ENST00000528455 PRDM6Q9NQX0 595 aa7.84□□□□□ -1.15
CD44-228ENST00000528455 MARCH5Q9NX47 278 aa7.84□□□□□ -1.15
CD44-228ENST00000528455 DDX43Q9NXZ2 648 aaKnown RBP7.84□□□□□ -1.15
CD44-228ENST00000528455 ARHGAP20Q9P2F6 1191 aa7.84□□□□□ -1.15
CD44-228ENST00000528455 SLC6A14Q9UN76 642 aa7.84□□□□□ -1.15
CD44-228ENST00000528455 STARD13Q9Y3M8 1113 aa7.84□□□□□ -1.15
CD44-228ENST00000528455 BACE2Q9Y5Z0 518 aa7.84□□□□□ -1.15
CD44-228ENST00000528455 XIRP2A4UGR9 3374 aa7.83□□□□□ -1.16
CD44-228ENST00000528455 OR6C75A6NL08 312 aa7.83□□□□□ -1.16
CD44-228ENST00000528455 EIF3CLB5ME19 914 aaKnown RBP7.83□□□□□ -1.16
CD44-228ENST00000528455 F8W810 466 aa7.83□□□□□ -1.16
CD44-228ENST00000528455 I3L4J1 428 aa7.83□□□□□ -1.16
CD44-228ENST00000528455 FGF18O76093 207 aa7.83□□□□□ -1.16
CD44-228ENST00000528455 C1RP00736 705 aa7.83□□□□□ -1.16
CD44-228ENST00000528455 CHRNB2P17787 502 aa7.83□□□□□ -1.16
CD44-228ENST00000528455 GNA15P30679 374 aa7.83□□□□□ -1.16
CD44-228ENST00000528455 CYLC1P35663 651 aaPredicted RBP7.83□□□□□ -1.16
CD44-228ENST00000528455 EIF4A3P38919 411 aaKnown RBP7.83□□□□□ -1.16
CD44-228ENST00000528455 RAP1GAPP47736 663 aa7.83□□□□□ -1.16
CD44-228ENST00000528455 PDE6CP51160 858 aa7.83□□□□□ -1.16
CD44-228ENST00000528455 KRT83P78385 493 aa7.83□□□□□ -1.16
CD44-228ENST00000528455 DSG1Q02413 1049 aa7.83□□□□□ -1.16
CD44-228ENST00000528455 GOLGA8FQ08AF8 430 aa7.83□□□□□ -1.16
CD44-228ENST00000528455 GOLGA8DPQ0D2H9 430 aa7.83□□□□□ -1.16
CD44-228ENST00000528455 PCSK7Q16549 785 aa7.83□□□□□ -1.16
CD44-228ENST00000528455 SLC18A3Q16572 532 aa7.83□□□□□ -1.16
CD44-228ENST00000528455 ZNF394Q53GI3 561 aa7.83□□□□□ -1.16
CD44-228ENST00000528455 SGO2Q562F6 1265 aa7.83□□□□□ -1.16
CD44-228ENST00000528455 TMCO4Q5TGY1 634 aa7.83□□□□□ -1.16
CD44-228ENST00000528455 E4F1Q66K89 784 aaPredicted RBP7.83□□□□□ -1.16
CD44-228ENST00000528455 KIAA1841Q6NSI8 718 aa7.83□□□□□ -1.16
CD44-228ENST00000528455 LCLAT1Q6UWP7 414 aa7.83□□□□□ -1.16
CD44-228ENST00000528455 DNAJC14Q6Y2X3 702 aaPredicted RBP7.83□□□□□ -1.16
CD44-228ENST00000528455 SCARA5Q6ZMJ2 495 aa7.83□□□□□ -1.16
CD44-228ENST00000528455 TRIM72Q6ZMU5 477 aa7.83□□□□□ -1.16
CD44-228ENST00000528455 TAS1R1Q7RTX1 841 aa7.83□□□□□ -1.16
CD44-228ENST00000528455 ZNF571Q7Z3V5 609 aaPredicted RBP7.83□□□□□ -1.16
CD44-228ENST00000528455 SPRED2Q7Z698 418 aa7.83□□□□□ -1.16
CD44-228ENST00000528455 ACOT1Q86TX2 421 aa7.83□□□□□ -1.16
CD44-228ENST00000528455 OSTM1Q86WC4 334 aa7.83□□□□□ -1.16
CD44-228ENST00000528455 CEP57Q86XR8 500 aa7.83□□□□□ -1.16
CD44-228ENST00000528455 DCP1BQ8IZD4 617 aaKnown RBP7.83□□□□□ -1.16
CD44-228ENST00000528455 KLHL23Q8NBE8 558 aa7.83□□□□□ -1.16
CD44-228ENST00000528455 LNX1Q8TBB1 728 aaPredicted RBP7.83□□□□□ -1.16
CD44-228ENST00000528455 HASPINQ8TF76 798 aa7.83□□□□□ -1.16
CD44-228ENST00000528455 GDPD5Q8WTR4 605 aa7.83□□□□□ -1.16
CD44-228ENST00000528455 TRIM44Q96DX7 344 aaPredicted RBP7.83□□□□□ -1.16
CD44-228ENST00000528455 CYFIP2Q96F07 1278 aa7.83□□□□□ -1.16
CD44-228ENST00000528455 VCPIP1Q96JH7 1222 aa7.83□□□□□ -1.16
CD44-228ENST00000528455 ASB2Q96Q27 587 aa7.83□□□□□ -1.16
CD44-228ENST00000528455 EIF3CQ99613 913 aaKnown RBP7.83□□□□□ -1.16
CD44-228ENST00000528455 HNRNPABQ99729 332 aaKnown RBP7.83□□□□□ -1.16
CD44-228ENST00000528455 RTP3Q9BQQ7 232 aa7.83□□□□□ -1.16
CD44-228ENST00000528455 C17orf80Q9BSJ5 609 aa7.83□□□□□ -1.16
CD44-228ENST00000528455 ELOVL4Q9GZR5 314 aa7.83□□□□□ -1.16
CD44-228ENST00000528455 ISCUQ9H1K1 167 aa7.83□□□□□ -1.16
CD44-228ENST00000528455 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP7.83□□□□□ -1.16
CD44-228ENST00000528455 FNIP2Q9P278 1114 aa7.83□□□□□ -1.16
CD44-228ENST00000528455 ADAMTS1Q9UHI8 967 aa7.83□□□□□ -1.16
CD44-228ENST00000528455 NOCTQ9UK39 431 aaKnown RBP7.83□□□□□ -1.16
CD44-228ENST00000528455 MAFFQ9ULX9 164 aa7.83□□□□□ -1.16
CD44-228ENST00000528455 COG5Q9UP83 839 aa7.83□□□□□ -1.16
CD44-228ENST00000528455 NME7Q9Y5B8 376 aa7.83□□□□□ -1.16
CD44-228ENST00000528455 TIMM13Q9Y5L4 95 aaPredicted RBP7.83□□□□□ -1.16
CD44-228ENST00000528455 IRAK3Q9Y616 596 aa7.83□□□□□ -1.16
CD44-228ENST00000528455 NLRC5Q86WI3 1866 aa7.83□□□□□ -1.16
CD44-228ENST00000528455 VWA8A3KMH1 1905 aa7.82□□□□□ -1.16
CD44-228ENST00000528455 THAP12O43422 761 aa7.82□□□□□ -1.16
CD44-228ENST00000528455 AKR1B10O60218 316 aa7.82□□□□□ -1.16
CD44-228ENST00000528455 ATP2C2O75185 946 aa7.82□□□□□ -1.16
CD44-228ENST00000528455 RTN2O75298 545 aa7.82□□□□□ -1.16
CD44-228ENST00000528455 NDUFA10O95299 355 aa7.82□□□□□ -1.16
CD44-228ENST00000528455 CXCL14O95715 111 aa7.82□□□□□ -1.16
CD44-228ENST00000528455 CYP1A1P04798 512 aaPredicted RBP7.82□□□□□ -1.16
CD44-228ENST00000528455 PNMA6AP0CW24 399 aaPredicted RBP7.82□□□□□ -1.16
CD44-228ENST00000528455 CTSAP10619 480 aa7.82□□□□□ -1.16
CD44-228ENST00000528455 CD19P15391 556 aa7.82□□□□□ -1.16
CD44-228ENST00000528455 ALAS2P22557 587 aa7.82□□□□□ -1.16
CD44-228ENST00000528455 TKTP29401 623 aaKnown RBP7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms