RNA–Protein interactions for RNA: ENST00000528280.1

CHD7-208, Transcript of chromodomain helicase DNA binding protein 7, human

TSL 2

Gene CHD7, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD7-208	ENST00000528280	CAMKK1	Q8N5S9	505 aa		10.14	□□□□□ -0.79
CHD7-208	ENST00000528280	TTC16	Q8NEE8	873 aa		10.14	□□□□□ -0.79
CHD7-208	ENST00000528280	SCAMP5	Q8TAC9	235 aa		10.14	□□□□□ -0.79
CHD7-208	ENST00000528280	SEMA4D	Q92854	862 aa		10.14	□□□□□ -0.79
CHD7-208	ENST00000528280	CD101	Q93033	1021 aa		10.14	□□□□□ -0.79
CHD7-208	ENST00000528280	EEF2KMT	Q96G04	330 aa		10.14	□□□□□ -0.79
CHD7-208	ENST00000528280	LINC00597	Q9H2U6	94 aa		10.14	□□□□□ -0.79
CHD7-208	ENST00000528280	FAM49B	Q9NUQ9	324 aa		10.14	□□□□□ -0.79
CHD7-208	ENST00000528280	SLC8A2	Q9UPR5	921 aa		10.14	□□□□□ -0.79
CHD7-208	ENST00000528280	SH3BP1	Q9Y3L3	701 aa		10.14	□□□□□ -0.79
CHD7-208	ENST00000528280	WNT6	Q9Y6F9	365 aa		10.14	□□□□□ -0.79
CHD7-208	ENST00000528280	GREB1	Q4ZG55	1949 aa		10.13	□□□□□ -0.79
CHD7-208	ENST00000528280	PALM2-AKAP2	B1ALY0	433 aa	Predicted RBP	10.13	□□□□□ -0.79
CHD7-208	ENST00000528280	PPP1R3G	B7ZBB8	358 aa		10.13	□□□□□ -0.79
CHD7-208	ENST00000528280	COCH	O43405	550 aa		10.13	□□□□□ -0.79
CHD7-208	ENST00000528280	RALA	P11233	206 aa		10.13	□□□□□ -0.79
CHD7-208	ENST00000528280	ACO1	P21399	889 aa	Known RBP	10.13	□□□□□ -0.79
CHD7-208	ENST00000528280	EIF2D	P41214	584 aa	Known RBP	10.13	□□□□□ -0.79
CHD7-208	ENST00000528280	PLA2G4A	P47712	749 aa		10.13	□□□□□ -0.79
CHD7-208	ENST00000528280	FMO5	P49326	533 aa		10.13	□□□□□ -0.79
CHD7-208	ENST00000528280	PMS1	P54277	932 aa	Known RBP	10.13	□□□□□ -0.79
CHD7-208	ENST00000528280	GAD2	Q05329	585 aa		10.13	□□□□□ -0.79
CHD7-208	ENST00000528280	PAK1	Q13153	545 aa		10.13	□□□□□ -0.79
CHD7-208	ENST00000528280	CUL2	Q13617	745 aa		10.13	□□□□□ -0.79
CHD7-208	ENST00000528280	BTBD8	Q5XKL5	378 aa		10.13	□□□□□ -0.79
CHD7-208	ENST00000528280	ARHGAP17	Q68EM7	881 aa		10.13	□□□□□ -0.79
CHD7-208	ENST00000528280	SMYD5	Q6GMV2	418 aa		10.13	□□□□□ -0.79
CHD7-208	ENST00000528280	KLHL10	Q6JEL2	608 aa		10.13	□□□□□ -0.79
CHD7-208	ENST00000528280	CLEC20A	Q6ZU45	233 aa		10.13	□□□□□ -0.79
CHD7-208	ENST00000528280	LONP2	Q86WA8	852 aa		10.13	□□□□□ -0.79
CHD7-208	ENST00000528280	ANKRD52	Q8NB46	1076 aa		10.13	□□□□□ -0.79
CHD7-208	ENST00000528280	ZMIZ2	Q8NF64	920 aa		10.13	□□□□□ -0.79
CHD7-208	ENST00000528280	WHAMM	Q8TF30	809 aa		10.13	□□□□□ -0.79
CHD7-208	ENST00000528280	NELFB	Q8WX92	580 aa		10.13	□□□□□ -0.79
CHD7-208	ENST00000528280	ERCC4	Q92889	916 aa	Predicted RBP	10.13	□□□□□ -0.79
CHD7-208	ENST00000528280	TATDN2	Q93075	761 aa		10.13	□□□□□ -0.79
CHD7-208	ENST00000528280	SLC35C1	Q96A29	364 aa		10.13	□□□□□ -0.79
CHD7-208	ENST00000528280	JAKMIP2	Q96AA8	810 aa		10.13	□□□□□ -0.79
CHD7-208	ENST00000528280	ELMO3	Q96BJ8	720 aa		10.13	□□□□□ -0.79
CHD7-208	ENST00000528280	FAM81B	Q96LP2	452 aa		10.13	□□□□□ -0.79
CHD7-208	ENST00000528280	HINFP	Q9BQA5	517 aa		10.13	□□□□□ -0.79
CHD7-208	ENST00000528280	EPC1	Q9H2F5	836 aa		10.13	□□□□□ -0.79
CHD7-208	ENST00000528280	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	10.13	□□□□□ -0.79	7e-6	■■■■■ 74.5
CHD7-208	ENST00000528280	TMEM30A	Q9NV96	361 aa		10.13	□□□□□ -0.79
CHD7-208	ENST00000528280	CLIC5	Q9NZA1	410 aa		10.13	□□□□□ -0.79
CHD7-208	ENST00000528280	KIAA1468	Q9P260	1216 aa		10.13	□□□□□ -0.79
CHD7-208	ENST00000528280	CFAP97	Q9P2B7	532 aa		10.13	□□□□□ -0.79
CHD7-208	ENST00000528280	HESX1	Q9UBX0	185 aa		10.13	□□□□□ -0.79
CHD7-208	ENST00000528280	LSM7	Q9UK45	103 aa	Known RBP	10.13	□□□□□ -0.79
CHD7-208	ENST00000528280	ZNF510	Q9Y2H8	683 aa		10.13	□□□□□ -0.79
CHD7-208	ENST00000528280	PTPRD	P23468	1912 aa		10.12	□□□□□ -0.79
CHD7-208	ENST00000528280		A0A0A0MRY4	1105 aa		10.12	□□□□□ -0.79
CHD7-208	ENST00000528280	TRIM49B	A6NDI0	452 aa		10.12	□□□□□ -0.79
CHD7-208	ENST00000528280	OTOL1	A6NHN0	477 aa	Predicted RBP	10.12	□□□□□ -0.79
CHD7-208	ENST00000528280	FOXD2	O60548	495 aa	Predicted RBP	10.12	□□□□□ -0.79
CHD7-208	ENST00000528280	TLR5	O60602	858 aa		10.12	□□□□□ -0.79
CHD7-208	ENST00000528280	GADD45B	O75293	160 aa	Predicted RBP	10.12	□□□□□ -0.79
CHD7-208	ENST00000528280	BEST1	O76090	585 aa		10.12	□□□□□ -0.79
CHD7-208	ENST00000528280	ADRB1	P08588	477 aa		10.12	□□□□□ -0.79
CHD7-208	ENST00000528280	PAEP	P09466	180 aa		10.12	□□□□□ -0.79
CHD7-208	ENST00000528280	VDR	P11473	427 aa		10.12	□□□□□ -0.79
CHD7-208	ENST00000528280	TNFRSF4	P43489	277 aa		10.12	□□□□□ -0.79
CHD7-208	ENST00000528280	KIF11	P52732	1056 aa		10.12	□□□□□ -0.79
CHD7-208	ENST00000528280	RAD23B	P54727	409 aa		10.12	□□□□□ -0.79
CHD7-208	ENST00000528280	MARS	P56192	900 aa	Known RBP	10.12	□□□□□ -0.79
CHD7-208	ENST00000528280	COG7	P83436	770 aa		10.12	□□□□□ -0.79
CHD7-208	ENST00000528280	SATB1	Q01826	763 aa		10.12	□□□□□ -0.79
CHD7-208	ENST00000528280	ORC1	Q13415	861 aa		10.12	□□□□□ -0.79
CHD7-208	ENST00000528280	GAS6	Q14393	721 aa		10.12	□□□□□ -0.79
CHD7-208	ENST00000528280	DHCR24	Q15392	516 aa		10.12	□□□□□ -0.79
CHD7-208	ENST00000528280	STIL	Q15468	1287 aa		10.12	□□□□□ -0.79
CHD7-208	ENST00000528280	HSF5	Q4G112	596 aa	Predicted RBP	10.12	□□□□□ -0.79
CHD7-208	ENST00000528280	CBWD6	Q4V339	395 aa		10.12	□□□□□ -0.79
CHD7-208	ENST00000528280	ZNF394	Q53GI3	561 aa		10.12	□□□□□ -0.79
CHD7-208	ENST00000528280	SGO2	Q562F6	1265 aa		10.12	□□□□□ -0.79
CHD7-208	ENST00000528280	CBWD3	Q5JTY5	395 aa		10.12	□□□□□ -0.79
CHD7-208	ENST00000528280	CBWD5	Q5RIA9	395 aa		10.12	□□□□□ -0.79
CHD7-208	ENST00000528280	PPP1R26	Q5T8A7	1209 aa	Predicted RBP	10.12	□□□□□ -0.79
CHD7-208	ENST00000528280	FSTL4	Q6MZW2	842 aa		10.12	□□□□□ -0.79
CHD7-208	ENST00000528280	TTI2	Q6NXR4	508 aa		10.12	□□□□□ -0.79
CHD7-208	ENST00000528280	TSSK4	Q6SA08	328 aa		10.12	□□□□□ -0.79
CHD7-208	ENST00000528280	HTR3D	Q70Z44	454 aa		10.12	□□□□□ -0.79
CHD7-208	ENST00000528280	CCDC186	Q7Z3E2	898 aa		10.12	□□□□□ -0.79
CHD7-208	ENST00000528280	MLKL	Q8NB16	471 aa		10.12	□□□□□ -0.79
CHD7-208	ENST00000528280	SUMF1	Q8NBK3	374 aa		10.12	□□□□□ -0.79
CHD7-208	ENST00000528280	SLC4A11	Q8NBS3	891 aa		10.12	□□□□□ -0.79
CHD7-208	ENST00000528280	KCNV2	Q8TDN2	545 aa		10.12	□□□□□ -0.79
CHD7-208	ENST00000528280	ACD	Q96AP0	544 aa		10.12	□□□□□ -0.79
CHD7-208	ENST00000528280	NT5C1B	Q96P26	610 aa		10.12	□□□□□ -0.79
CHD7-208	ENST00000528280	TWNK	Q96RR1	684 aa		10.12	□□□□□ -0.79
CHD7-208	ENST00000528280	PNKP	Q96T60	521 aa		10.12	□□□□□ -0.79
CHD7-208	ENST00000528280	CYLD	Q9NQC7	956 aa		10.12	□□□□□ -0.79
CHD7-208	ENST00000528280	RBM12	Q9NTZ6	932 aa	Known RBP	10.12	□□□□□ -0.79
CHD7-208	ENST00000528280	SMPD4	Q9NXE4	827 aa		10.12	□□□□□ -0.79
CHD7-208	ENST00000528280	GMIP	Q9P107	970 aa		10.12	□□□□□ -0.79
CHD7-208	ENST00000528280	WDR35	Q9P2L0	1181 aa		10.12	□□□□□ -0.79
CHD7-208	ENST00000528280	NCDN	Q9UBB6	729 aa		10.12	□□□□□ -0.79
CHD7-208	ENST00000528280	HMGXB4	Q9UGU5	601 aa		10.12	□□□□□ -0.79
CHD7-208	ENST00000528280	DNMT3L	Q9UJW3	386 aa		10.12	□□□□□ -0.79
CHD7-208	ENST00000528280	UTP18	Q9Y5J1	556 aa	Known RBP eCLIP	10.12	□□□□□ -0.79

Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms