RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 CENPUQ71F23 418 aa6.04□□□□□ -1.44
CD44-225ENST00000527326 HAUS6Q7Z4H7 955 aa6.04□□□□□ -1.44
CD44-225ENST00000527326 CCDC84Q86UT8 332 aaPredicted RBP6.04□□□□□ -1.44
CD44-225ENST00000527326 C2CD5Q86YS7 1000 aa6.04□□□□□ -1.44
CD44-225ENST00000527326 TMPRSS6Q8IU80 811 aa6.04□□□□□ -1.44
CD44-225ENST00000527326 CCDC28AQ8IWP9 274 aa6.04□□□□□ -1.44
CD44-225ENST00000527326 ZNF34Q8IZ26 560 aa6.04□□□□□ -1.44
CD44-225ENST00000527326 SYCE1Q8N0S2 351 aa6.04□□□□□ -1.44
CD44-225ENST00000527326 NDUFAF2Q8N183 169 aa6.04□□□□□ -1.44
CD44-225ENST00000527326 SRBD1Q8N5C6 995 aaKnown RBP6.04□□□□□ -1.44
CD44-225ENST00000527326 DDX51Q8N8A6 666 aaKnown RBP eCLIP6.04□□□□□ -1.44
CD44-225ENST00000527326 PDPRQ8NCN5 879 aa6.04□□□□□ -1.44
CD44-225ENST00000527326 ZNF420Q8TAQ5 688 aaPredicted RBP6.04□□□□□ -1.44
CD44-225ENST00000527326 RAB3IL1Q8TBN0 382 aa6.04□□□□□ -1.44
CD44-225ENST00000527326 ACTRT2Q8TDY3 377 aa6.04□□□□□ -1.44
CD44-225ENST00000527326 GDPD5Q8WTR4 605 aa6.04□□□□□ -1.44
CD44-225ENST00000527326 OSBP2Q969R2 916 aa6.04□□□□□ -1.44
CD44-225ENST00000527326 ASIC4Q96FT7 647 aa6.04□□□□□ -1.44
CD44-225ENST00000527326 ZNF486Q96H40 463 aaPredicted RBP6.04□□□□□ -1.44
CD44-225ENST00000527326 METTL2AQ96IZ6 378 aaKnown RBP6.04□□□□□ -1.44
CD44-225ENST00000527326 FAR2Q96K12 515 aa6.04□□□□□ -1.44
CD44-225ENST00000527326 FAM161BQ96MY7 647 aa6.04□□□□□ -1.44
CD44-225ENST00000527326 LPIN3Q9BQK8 851 aa6.04□□□□□ -1.44
CD44-225ENST00000527326 CCDC77Q9BR77 488 aa6.04□□□□□ -1.44
CD44-225ENST00000527326 TUBGCP2Q9BSJ2 902 aa6.04□□□□□ -1.44
CD44-225ENST00000527326 MROQ9BYG7 248 aa6.04□□□□□ -1.44
CD44-225ENST00000527326 INO80BQ9C086 356 aaPredicted RBP6.04□□□□□ -1.44
CD44-225ENST00000527326 CDH19Q9H159 772 aa6.04□□□□□ -1.44
CD44-225ENST00000527326 HIPK3Q9H422 1215 aa6.04□□□□□ -1.44
CD44-225ENST00000527326 ARMC7Q9H6L4 198 aa6.04□□□□□ -1.44
CD44-225ENST00000527326 SCPEP1Q9HB40 452 aa6.04□□□□□ -1.44
CD44-225ENST00000527326 LRRC4CQ9HCJ2 640 aa6.04□□□□□ -1.44
CD44-225ENST00000527326 SEC31BQ9NQW1 1179 aa6.04□□□□□ -1.44
CD44-225ENST00000527326 PRDM6Q9NQX0 595 aa6.04□□□□□ -1.44
CD44-225ENST00000527326 TBC1D14Q9P2M4 693 aa6.04□□□□□ -1.44
CD44-225ENST00000527326 TNFRSF10DQ9UBN6 386 aa6.04□□□□□ -1.44
CD44-225ENST00000527326 UBA2Q9UBT2 640 aaPredicted RBP6.04□□□□□ -1.44
CD44-225ENST00000527326 SMG5Q9UPR3 1016 aaKnown RBP6.04□□□□□ -1.44
CD44-225ENST00000527326 MTO1Q9Y2Z2 717 aaKnown RBP6.04□□□□□ -1.44
CD44-225ENST00000527326 RBMX2Q9Y388 322 aaKnown RBP6.04□□□□□ -1.44
CD44-225ENST00000527326 SBDSQ9Y3A5 250 aaKnown RBP eCLIP6.04□□□□□ -1.44
CD44-225ENST00000527326 DTNAQ9Y4J8 743 aa6.04□□□□□ -1.44
CD44-225ENST00000527326 TACC3Q9Y6A5 838 aa6.04□□□□□ -1.44
CD44-225ENST00000527326 NWD1Q149M9 1564 aa6.04□□□□□ -1.44
CD44-225ENST00000527326 USP31Q70CQ4 1352 aa6.04□□□□□ -1.44
CD44-225ENST00000527326 PIK3C2BO00750 1634 aa6.03□□□□□ -1.44
CD44-225ENST00000527326 MAST3O60307 1309 aa6.03□□□□□ -1.44
CD44-225ENST00000527326 ZNF609O15014 1411 aa6.03□□□□□ -1.44
CD44-225ENST00000527326 A0A0B4J203 849 aa6.03□□□□□ -1.44
CD44-225ENST00000527326 KLF18A0A0U1RQI7 1052 aa6.03□□□□□ -1.44
CD44-225ENST00000527326 ARHGEF35A5YM69 484 aa6.03□□□□□ -1.44
CD44-225ENST00000527326 FAM83GA6ND36 823 aa6.03□□□□□ -1.44
CD44-225ENST00000527326 FAM47DPA6NHR8 397 aa6.03□□□□□ -1.44
CD44-225ENST00000527326 BTBD11A6QL63 1104 aa6.03□□□□□ -1.44
CD44-225ENST00000527326 ZNF839A8K0R7 811 aa6.03□□□□□ -1.44
CD44-225ENST00000527326 MIF4GDA9UHW6 222 aaKnown RBP6.03□□□□□ -1.44
CD44-225ENST00000527326 H3BSA7 217 aa6.03□□□□□ -1.44
CD44-225ENST00000527326 PSMA7O14818 248 aa6.03□□□□□ -1.44
CD44-225ENST00000527326 SULT1B1O43704 296 aa6.03□□□□□ -1.44
CD44-225ENST00000527326 NUAK1O60285 661 aa6.03□□□□□ -1.44
CD44-225ENST00000527326 CAMTA2O94983 1202 aa6.03□□□□□ -1.44
CD44-225ENST00000527326 BMP10O95393 424 aa6.03□□□□□ -1.44
CD44-225ENST00000527326 RECKO95980 971 aa6.03□□□□□ -1.44
CD44-225ENST00000527326 SERPING1P05155 500 aa6.03□□□□□ -1.44
CD44-225ENST00000527326 TFPTP0C1Z6 253 aa6.03□□□□□ -1.44
CD44-225ENST00000527326 SRGAP2CP0DJJ0 459 aa6.03□□□□□ -1.44
CD44-225ENST00000527326 PRKCAP17252 672 aa6.03□□□□□ -1.44
CD44-225ENST00000527326 PLCG1P19174 1290 aa6.03□□□□□ -1.44
CD44-225ENST00000527326 CXCR2P25025 360 aa6.03□□□□□ -1.44
CD44-225ENST00000527326 PMLP29590 882 aa6.03□□□□□ -1.44
CD44-225ENST00000527326 FOXN2P32314 431 aa6.03□□□□□ -1.44
CD44-225ENST00000527326 GNL1P36915 607 aaPredicted RBP6.03□□□□□ -1.44
CD44-225ENST00000527326 ADCY8P40145 1251 aa6.03□□□□□ -1.44
CD44-225ENST00000527326 SLC1A4P43007 532 aa6.03□□□□□ -1.44
CD44-225ENST00000527326 AFMP43652 599 aa6.03□□□□□ -1.44
CD44-225ENST00000527326 MTIF2P46199 727 aaKnown RBP6.03□□□□□ -1.44
CD44-225ENST00000527326 IREB2P48200 963 aaKnown RBP6.03□□□□□ -1.44
CD44-225ENST00000527326 CASP5P51878 434 aa6.03□□□□□ -1.44
CD44-225ENST00000527326 AQP4P55087 323 aa6.03□□□□□ -1.44
CD44-225ENST00000527326 MLLT6P55198 1093 aaPredicted RBP6.03□□□□□ -1.44
CD44-225ENST00000527326 SRP54P61011 504 aaKnown RBP6.03□□□□□ -1.44
CD44-225ENST00000527326 POLR2FP61218 127 aaKnown RBP6.03□□□□□ -1.44
CD44-225ENST00000527326 IGBP1P78318 339 aa6.03□□□□□ -1.44
CD44-225ENST00000527326 ECT2LQ008S8 904 aa6.03□□□□□ -1.44
CD44-225ENST00000527326 IFITM2Q01629 132 aa6.03□□□□□ -1.44
CD44-225ENST00000527326 PRKCQQ04759 706 aa6.03□□□□□ -1.44
CD44-225ENST00000527326 DLG1Q12959 904 aa6.03□□□□□ -1.44
CD44-225ENST00000527326 GNA13Q14344 377 aa6.03□□□□□ -1.44
CD44-225ENST00000527326 SQLEQ14534 574 aa6.03□□□□□ -1.44
CD44-225ENST00000527326 TBCCQ15814 346 aa6.03□□□□□ -1.44
CD44-225ENST00000527326 PDK4Q16654 411 aa6.03□□□□□ -1.44
CD44-225ENST00000527326 LSM12Q3MHD2 195 aaKnown RBP6.03□□□□□ -1.44
CD44-225ENST00000527326 SLC9C1Q4G0N8 1177 aa6.03□□□□□ -1.44
CD44-225ENST00000527326 KIAA1755Q5JYT7 1200 aa6.03□□□□□ -1.44
CD44-225ENST00000527326 TRAPPC3LQ5T215 181 aa6.03□□□□□ -1.44
CD44-225ENST00000527326 OGFRL1Q5TC84 451 aaPredicted RBP6.03□□□□□ -1.44
CD44-225ENST00000527326 C1orf146Q5VVC0 180 aa6.03□□□□□ -1.44
CD44-225ENST00000527326 NEK5Q6P3R8 708 aa6.03□□□□□ -1.44
CD44-225ENST00000527326 FIP1L1Q6UN15 594 aaKnown RBP6.03□□□□□ -1.44
CD44-225ENST00000527326 ZDHHC24Q6UX98 284 aa6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms