RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 UBR7Q8N806 425 aa21.74■■□□□ 1.07
VPS28-206ENST00000526734 ATRIPQ8WXE1 791 aa21.74■■□□□ 1.07
VPS28-206ENST00000526734 CD101Q93033 1021 aa21.74■■□□□ 1.07
VPS28-206ENST00000526734 JAKMIP2Q96AA8 810 aa21.74■■□□□ 1.07
VPS28-206ENST00000526734 CCSER2Q9H7U1 834 aa21.74■■□□□ 1.07
VPS28-206ENST00000526734 RBM12Q9NTZ6 932 aaKnown RBP21.74■■□□□ 1.07
VPS28-206ENST00000526734 DACH1Q9UI36 760 aa21.74■■□□□ 1.07
VPS28-206ENST00000526734 SH3BP1Q9Y3L3 701 aa21.74■■□□□ 1.07
VPS28-206ENST00000526734 USP3Q9Y6I4 520 aa21.74■■□□□ 1.07
VPS28-206ENST00000526734 R4GN57 208 aa21.74■■□□□ 1.07
VPS28-206ENST00000526734 ADH1CP00326 375 aa21.73■■□□□ 1.07
VPS28-206ENST00000526734 VDRP11473 427 aa21.73■■□□□ 1.07
VPS28-206ENST00000526734 ATP5C1P36542 298 aaKnown RBP21.73■■□□□ 1.07
VPS28-206ENST00000526734 LRMPQ12912 555 aa21.73■■□□□ 1.07
VPS28-206ENST00000526734 GAS6Q14393 721 aa21.73■■□□□ 1.07
VPS28-206ENST00000526734 FSTL4Q6MZW2 842 aa21.73■■□□□ 1.07
VPS28-206ENST00000526734 PPM1KQ8N3J5 372 aa21.73■■□□□ 1.07
VPS28-206ENST00000526734 CHFRQ96EP1 664 aa21.73■■□□□ 1.07
VPS28-206ENST00000526734 ZFRQ96KR1 1074 aaKnown RBP21.73■■□□□ 1.07
VPS28-206ENST00000526734 GBP4Q96PP9 640 aa21.73■■□□□ 1.07
VPS28-206ENST00000526734 NUP62CLQ9H1M0 184 aa21.73■■□□□ 1.07
VPS28-206ENST00000526734 CLIC5Q9NZA1 410 aa21.73■■□□□ 1.07
VPS28-206ENST00000526734 CACNA1IQ9P0X4 2223 aa21.73■■□□□ 1.07
VPS28-206ENST00000526734 CYP26A1O43174 497 aa21.72■■□□□ 1.07
VPS28-206ENST00000526734 LILRB5O75023 590 aa21.72■■□□□ 1.07
VPS28-206ENST00000526734 TDGF1P13385 188 aa21.72■■□□□ 1.07
VPS28-206ENST00000526734 HOXA6P31267 233 aa21.72■■□□□ 1.07
VPS28-206ENST00000526734 EIF2DP41214 584 aaKnown RBP21.72■■□□□ 1.07
VPS28-206ENST00000526734 BST2Q10589 180 aaKnown RBP21.72■■□□□ 1.07
VPS28-206ENST00000526734 STILQ15468 1287 aa21.72■■□□□ 1.07
VPS28-206ENST00000526734 SMYD5Q6GMV2 418 aa21.72■■□□□ 1.07
VPS28-206ENST00000526734 Q6ZS52 159 aa21.72■■□□□ 1.07
VPS28-206ENST00000526734 ADGRG2Q8IZP9 1017 aa21.72■■□□□ 1.07
VPS28-206ENST00000526734 EHBP1Q8NDI1 1231 aa21.72■■□□□ 1.07
VPS28-206ENST00000526734 LMO3Q8TAP4 145 aa21.72■■□□□ 1.07
VPS28-206ENST00000526734 FAM81BQ96LP2 452 aa21.72■■□□□ 1.07
VPS28-206ENST00000526734 LINC00597Q9H2U6 94 aa21.72■■□□□ 1.07
VPS28-206ENST00000526734 CHURC1-FNTBB4DL54 471 aa21.71■■□□□ 1.07
VPS28-206ENST00000526734 XPO1O14980 1071 aaKnown RBP21.71■■□□□ 1.07
VPS28-206ENST00000526734 CYP17A1P05093 508 aa21.71■■□□□ 1.07
VPS28-206ENST00000526734 SETSIPP0DME0 302 aa21.71■■□□□ 1.07
VPS28-206ENST00000526734 RALAP11233 206 aa21.71■■□□□ 1.07
VPS28-206ENST00000526734 PRKCSHP14314 528 aaPredicted RBP21.71■■□□□ 1.07
VPS28-206ENST00000526734 CD19P15391 556 aa21.71■■□□□ 1.07
VPS28-206ENST00000526734 GALK1P51570 392 aa21.71■■□□□ 1.07
VPS28-206ENST00000526734 GOLGA7BQ2TAP0 167 aa21.71■■□□□ 1.07
VPS28-206ENST00000526734 RAB41Q5JT25 222 aa21.71■■□□□ 1.07
VPS28-206ENST00000526734 PIGZQ86VD9 579 aa21.71■■□□□ 1.07
VPS28-206ENST00000526734 MTPAPQ9NVV4 582 aaKnown RBP eCLIP21.71■■□□□ 1.07
VPS28-206ENST00000526734 LSM7Q9UK45 103 aaKnown RBP21.71■■□□□ 1.07
VPS28-206ENST00000526734 TSPAN16Q9UKR8 245 aa21.71■■□□□ 1.07
VPS28-206ENST00000526734 SATB1Q01826 763 aa21.7■■□□□ 1.06
VPS28-206ENST00000526734 DHCR24Q15392 516 aa21.7■■□□□ 1.06
VPS28-206ENST00000526734 CT47A1Q5JQC4 288 aaPredicted RBP21.7■■□□□ 1.06
VPS28-206ENST00000526734 TMEM270Q6UE05 265 aa21.7■■□□□ 1.06
VPS28-206ENST00000526734 TTC30AQ86WT1 665 aa21.7■■□□□ 1.06
VPS28-206ENST00000526734 ACDQ96AP0 544 aa21.7■■□□□ 1.06
VPS28-206ENST00000526734 CNOT6LQ96LI5 555 aaKnown RBP21.7■■□□□ 1.06
VPS28-206ENST00000526734 DNMT3LQ9UJW3 386 aa21.7■■□□□ 1.06
VPS28-206ENST00000526734 NAGPAQ9UK23 515 aa21.7■■□□□ 1.06
VPS28-206ENST00000526734 PCDHB4Q9Y5E5 795 aa21.7■■□□□ 1.06
VPS28-206ENST00000526734 FANCMQ8IYD8 2048 aa21.69■■□□□ 1.06
VPS28-206ENST00000526734 A0A1W2PQH9 124 aa21.69■■□□□ 1.06
VPS28-206ENST00000526734 PALM2-AKAP2B1ALY0 433 aaPredicted RBP21.69■■□□□ 1.06
VPS28-206ENST00000526734 O00370 1275 aa21.69■■□□□ 1.06
VPS28-206ENST00000526734 RARGP13631 454 aa21.69■■□□□ 1.06
VPS28-206ENST00000526734 ERCC5P28715 1186 aaPredicted RBP21.69■■□□□ 1.06
VPS28-206ENST00000526734 TPD52L1Q16890 204 aaPredicted RBP21.69■■□□□ 1.06
VPS28-206ENST00000526734 PREPLQ4J6C6 727 aaPredicted RBP21.69■■□□□ 1.06
VPS28-206ENST00000526734 TSSK4Q6SA08 328 aa21.69■■□□□ 1.06
VPS28-206ENST00000526734 LCLAT1Q6UWP7 414 aa21.69■■□□□ 1.06
VPS28-206ENST00000526734 HTR3DQ70Z44 454 aa21.69■■□□□ 1.06
VPS28-206ENST00000526734 ENOSF1Q7L5Y1 443 aa21.69■■□□□ 1.06
VPS28-206ENST00000526734 FAM114A1Q8IWE2 563 aa21.69■■□□□ 1.06
VPS28-206ENST00000526734 KLF16Q9BXK1 252 aaPredicted RBP21.69■■□□□ 1.06
VPS28-206ENST00000526734 INTS2Q9H0H0 1204 aaKnown RBP21.69■■□□□ 1.06
VPS28-206ENST00000526734 EPC1Q9H2F5 836 aa21.69■■□□□ 1.06
VPS28-206ENST00000526734 NMUR1Q9HB89 426 aa21.69■■□□□ 1.06
VPS28-206ENST00000526734 ZFHX2Q9C0A1 2572 aaPredicted RBP21.69■■□□□ 1.06
VPS28-206ENST00000526734 GOLGA6L22H0YM25 854 aa21.68■■□□□ 1.06
VPS28-206ENST00000526734 EGFP01133 1207 aa21.68■■□□□ 1.06
VPS28-206ENST00000526734 ADH5P11766 374 aa21.68■■□□□ 1.06
VPS28-206ENST00000526734 CNR2P34972 360 aa21.68■■□□□ 1.06
VPS28-206ENST00000526734 PLA2G4AP47712 749 aa21.68■■□□□ 1.06
VPS28-206ENST00000526734 GAD2Q05329 585 aa21.68■■□□□ 1.06
VPS28-206ENST00000526734 PDE4CQ08493 712 aa21.68■■□□□ 1.06
VPS28-206ENST00000526734 C10orf120Q5SQS8 335 aa21.68■■□□□ 1.06
VPS28-206ENST00000526734 SCML4Q8N228 414 aa21.68■■□□□ 1.06
VPS28-206ENST00000526734 THAP9Q9H5L6 903 aa21.68■■□□□ 1.06
VPS28-206ENST00000526734 LRRC4Q9HBW1 653 aa21.68■■□□□ 1.06
VPS28-206ENST00000526734 OSER1Q9NX31 292 aa21.68■■□□□ 1.06
VPS28-206ENST00000526734 MYH10P35580 1976 aa21.67■■□□□ 1.06
VPS28-206ENST00000526734 CCDC163A0A0D9SF12 145 aa21.67■■□□□ 1.06
VPS28-206ENST00000526734 GTPBP10A4D1E9 387 aaKnown RBP21.67■■□□□ 1.06
VPS28-206ENST00000526734 K7ESF4 209 aa21.67■■□□□ 1.06
VPS28-206ENST00000526734 HOXC11O43248 304 aaPredicted RBP21.67■■□□□ 1.06
VPS28-206ENST00000526734 RNF40O75150 1001 aa21.67■■□□□ 1.06
VPS28-206ENST00000526734 ZBED1O96006 694 aa21.67■■□□□ 1.06
VPS28-206ENST00000526734 OPRD1P41143 372 aa21.67■■□□□ 1.06
VPS28-206ENST00000526734 PGFP49763 221 aa21.67■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms