RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 CAPN8A6NHC0 703 aa8.13□□□□□ -1.11
SDCBP-208ENST00000520228 UBE2Q2LH0YL09 131 aa8.13□□□□□ -1.11
SDCBP-208ENST00000520228 ZNF185O15231 689 aa8.13□□□□□ -1.11
SDCBP-208ENST00000520228 PRKG1Q13976 671 aa8.13□□□□□ -1.11
SDCBP-208ENST00000520228 UTP14CQ5TAP6 766 aaKnown RBP8.13□□□□□ -1.11
SDCBP-208ENST00000520228 RGMBQ6NW40 437 aa8.13□□□□□ -1.11
SDCBP-208ENST00000520228 MOB2Q70IA6 237 aa8.13□□□□□ -1.11
SDCBP-208ENST00000520228 MAEAQ7L5Y9 396 aa8.13□□□□□ -1.11
SDCBP-208ENST00000520228 ARMC9Q7Z3E5 817 aa8.13□□□□□ -1.11
SDCBP-208ENST00000520228 FAM156AQ8NDB6 213 aa8.13□□□□□ -1.11
SDCBP-208ENST00000520228 EXOC6Q8TAG9 804 aa8.13□□□□□ -1.11
SDCBP-208ENST00000520228 NSUN4Q96CB9 384 aaKnown RBP8.13□□□□□ -1.11
SDCBP-208ENST00000520228 TMEM39BQ9GZU3 492 aa8.13□□□□□ -1.11
SDCBP-208ENST00000520228 PIH1D3Q9NQM4 214 aaKnown RBP8.13□□□□□ -1.11
SDCBP-208ENST00000520228 RLIMQ9NVW2 624 aa8.13□□□□□ -1.11
SDCBP-208ENST00000520228 SORCS3Q9UPU3 1222 aa8.13□□□□□ -1.11
SDCBP-208ENST00000520228 MROH7-TTC4A0A0A0MT08 1334 aa8.12□□□□□ -1.11
SDCBP-208ENST00000520228 GAKO14976 1311 aa8.12□□□□□ -1.11
SDCBP-208ENST00000520228 GPR75-ASB3A0A0A6YYF3 556 aa8.12□□□□□ -1.11
SDCBP-208ENST00000520228 IDH1O75874 414 aaKnown RBP8.12□□□□□ -1.11
SDCBP-208ENST00000520228 AGFG2O95081 481 aa8.12□□□□□ -1.11
SDCBP-208ENST00000520228 AHSGP02765 367 aa8.12□□□□□ -1.11
SDCBP-208ENST00000520228 CKBP12277 381 aa8.12□□□□□ -1.11
SDCBP-208ENST00000520228 RHCEP18577 417 aa8.12□□□□□ -1.11
SDCBP-208ENST00000520228 BTDP43251 543 aa8.12□□□□□ -1.11
SDCBP-208ENST00000520228 RNASE9P60153 205 aaKnown RBP8.12□□□□□ -1.11
SDCBP-208ENST00000520228 NOMO3P69849 1222 aa8.12□□□□□ -1.11
SDCBP-208ENST00000520228 RHDQ02161 417 aa8.12□□□□□ -1.11
SDCBP-208ENST00000520228 HDAC1Q13547 482 aaPredicted RBP8.12□□□□□ -1.11
SDCBP-208ENST00000520228 CNN3Q15417 329 aaKnown RBP8.12□□□□□ -1.11
SDCBP-208ENST00000520228 USP39Q53GS9 565 aaKnown RBP8.12□□□□□ -1.11
SDCBP-208ENST00000520228 NOMO2Q5JPE7 1267 aa8.12□□□□□ -1.11
SDCBP-208ENST00000520228 NAA16Q6N069 864 aaPredicted RBP8.12□□□□□ -1.11
SDCBP-208ENST00000520228 PRRT2Q7Z6L0 340 aaPredicted RBP8.12□□□□□ -1.11
SDCBP-208ENST00000520228 C1orf210Q8IVY1 113 aa8.12□□□□□ -1.11
SDCBP-208ENST00000520228 ZNF384Q8TF68 577 aa8.12□□□□□ -1.11
SDCBP-208ENST00000520228 NUP133Q8WUM0 1156 aa8.12□□□□□ -1.11
SDCBP-208ENST00000520228 MRGPRX1Q96LB2 322 aa8.12□□□□□ -1.11
SDCBP-208ENST00000520228 ZMAT3Q9HA38 289 aaKnown RBP8.12□□□□□ -1.11
SDCBP-208ENST00000520228 KLHL11Q9NVR0 708 aa8.12□□□□□ -1.11
SDCBP-208ENST00000520228 PRC1O43663 620 aa8.11□□□□□ -1.11
SDCBP-208ENST00000520228 BAG3O95817 575 aa8.11□□□□□ -1.11
SDCBP-208ENST00000520228 MAP2K2P36507 400 aa8.11□□□□□ -1.11
SDCBP-208ENST00000520228 TCP10Q12799 353 aa8.11□□□□□ -1.11
SDCBP-208ENST00000520228 PDCD4Q53EL6 469 aaKnown RBP8.11□□□□□ -1.11
SDCBP-208ENST00000520228 RNF207Q6ZRF8 634 aa8.11□□□□□ -1.11
SDCBP-208ENST00000520228 GDF7Q7Z4P5 450 aa8.11□□□□□ -1.11
SDCBP-208ENST00000520228 CELF5Q8N6W0 485 aaKnown RBP8.11□□□□□ -1.11
SDCBP-208ENST00000520228 TMIEQ8NEW7 156 aa8.11□□□□□ -1.11
SDCBP-208ENST00000520228 TBC1D15Q8TC07 691 aa8.11□□□□□ -1.11
SDCBP-208ENST00000520228 BRIX1Q8TDN6 353 aaKnown RBP8.11□□□□□ -1.11
SDCBP-208ENST00000520228 FAM151AQ8WW52 585 aa8.11□□□□□ -1.11
SDCBP-208ENST00000520228 CCDC136Q96JN2 1154 aa8.11□□□□□ -1.11
SDCBP-208ENST00000520228 KLHL32Q96NJ5 620 aa8.11□□□□□ -1.11
SDCBP-208ENST00000520228 TEX101Q9BY14 249 aa8.11□□□□□ -1.11
SDCBP-208ENST00000520228 C22orf23Q9BZE7 217 aa8.11□□□□□ -1.11
SDCBP-208ENST00000520228 RWDD1Q9H446 243 aaPredicted RBP8.11□□□□□ -1.11
SDCBP-208ENST00000520228 BRD9Q9H8M2 597 aa8.11□□□□□ -1.11
SDCBP-208ENST00000520228 GPR35Q9HC97 309 aa8.11□□□□□ -1.11
SDCBP-208ENST00000520228 ECHDC1Q9NTX5 307 aa8.11□□□□□ -1.11
SDCBP-208ENST00000520228 CFAP97Q9P2B7 532 aa8.11□□□□□ -1.11
SDCBP-208ENST00000520228 STAP2Q9UGK3 403 aa8.11□□□□□ -1.11
SDCBP-208ENST00000520228 EIF2B4Q9UI10 523 aaKnown RBP8.11□□□□□ -1.11
SDCBP-208ENST00000520228 FZD1Q9UP38 647 aa8.11□□□□□ -1.11
SDCBP-208ENST00000520228 USP15Q9Y4E8 981 aaPredicted RBP8.11□□□□□ -1.11
SDCBP-208ENST00000520228 A0A1B0GUL6 1792 aa8.1□□□□□ -1.11
SDCBP-208ENST00000520228 CCDC78A2IDD5 438 aa8.1□□□□□ -1.11
SDCBP-208ENST00000520228 GOLIM4O00461 696 aa8.1□□□□□ -1.11
SDCBP-208ENST00000520228 ENTPD3O75355 529 aa8.1□□□□□ -1.11
SDCBP-208ENST00000520228 WDHD1O75717 1129 aaPredicted RBP8.1□□□□□ -1.11
SDCBP-208ENST00000520228 MAP4K4O95819 1239 aaPredicted RBP8.1□□□□□ -1.11
SDCBP-208ENST00000520228 GJB1P08034 283 aa8.1□□□□□ -1.11
SDCBP-208ENST00000520228 RHBDL3P58872 404 aa8.1□□□□□ -1.11
SDCBP-208ENST00000520228 KRTAP10-2P60368 255 aa8.1□□□□□ -1.11
SDCBP-208ENST00000520228 IRX6P78412 446 aaPredicted RBP8.1□□□□□ -1.11
SDCBP-208ENST00000520228 SLC25A3Q00325 362 aa8.1□□□□□ -1.11
SDCBP-208ENST00000520228 MAP2K1Q02750 393 aaPredicted RBP8.1□□□□□ -1.11
SDCBP-208ENST00000520228 ANKRD45Q5TZF3 282 aa8.1□□□□□ -1.11
SDCBP-208ENST00000520228 TMED8Q6PL24 325 aaPredicted RBP8.1□□□□□ -1.11
SDCBP-208ENST00000520228 LRRC55Q6ZSA7 311 aa8.1□□□□□ -1.11
SDCBP-208ENST00000520228 OR56A1Q8NGH5 318 aa8.1□□□□□ -1.11
SDCBP-208ENST00000520228 ANKS1AQ92625 1134 aa8.1□□□□□ -1.11
SDCBP-208ENST00000520228 TNPO1Q92973 898 aaKnown RBP8.1□□□□□ -1.11
SDCBP-208ENST00000520228 GCC1Q96CN9 775 aa8.1□□□□□ -1.11
SDCBP-208ENST00000520228 SARGQ9BW04 601 aa8.1□□□□□ -1.11
SDCBP-208ENST00000520228 IDI2Q9BXS1 227 aa8.1□□□□□ -1.11
SDCBP-208ENST00000520228 BOLA2Q9H3K6 86 aa8.1□□□□□ -1.11
SDCBP-208ENST00000520228 SARS2Q9NP81 518 aaKnown RBP8.1□□□□□ -1.11
SDCBP-208ENST00000520228 PCDHA6Q9UN73 950 aa8.1□□□□□ -1.11
SDCBP-208ENST00000520228 RECQL4O94761 1208 aa8.09□□□□□ -1.11
SDCBP-208ENST00000520228 SCAF4O95104 1147 aaKnown RBP8.09□□□□□ -1.11
SDCBP-208ENST00000520228 HSPA1AP0DMV8 641 aaKnown RBP8.09□□□□□ -1.11
SDCBP-208ENST00000520228 HSPA1BP0DMV9 641 aaKnown RBP8.09□□□□□ -1.11
SDCBP-208ENST00000520228 HDCP19113 662 aa8.09□□□□□ -1.11
SDCBP-208ENST00000520228 PICALMQ13492 652 aa8.09□□□□□ -1.11
SDCBP-208ENST00000520228 KHDC1LQ5JSQ8 128 aa8.09□□□□□ -1.11
SDCBP-208ENST00000520228 SLC9C2Q5TAH2 1124 aa8.09□□□□□ -1.11
SDCBP-208ENST00000520228 TSHZ3Q63HK5 1081 aa8.09□□□□□ -1.11
SDCBP-208ENST00000520228 RASAL3Q86YV0 1011 aa8.09□□□□□ -1.11
SDCBP-208ENST00000520228 TEX11Q8IYF3 940 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms