RNA–Protein interactions for RNA: ENST00000515620.5

CLDND1-231, Transcript of claudin domain containing 1, human

TSL 3

Gene CLDND1, Length 663 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLDND1-231	ENST00000515620	POMGNT1	Q8WZA1	660 aa		11.19	□□□□□ -0.62
CLDND1-231	ENST00000515620	TOE1	Q96GM8	510 aa	Known RBP	11.19	□□□□□ -0.62
CLDND1-231	ENST00000515620	FCRL3	Q96P31	734 aa	Predicted RBP	11.19	□□□□□ -0.62
CLDND1-231	ENST00000515620	KIF2C	Q99661	725 aa		11.19	□□□□□ -0.62
CLDND1-231	ENST00000515620	IKZF4	Q9H2S9	585 aa		11.19	□□□□□ -0.62
CLDND1-231	ENST00000515620	PRORY	Q9H606	182 aa		11.19	□□□□□ -0.62
CLDND1-231	ENST00000515620	DNAJC17	Q9NVM6	304 aa	Known RBP	11.19	□□□□□ -0.62
CLDND1-231	ENST00000515620	GDAP2	Q9NXN4	497 aa		11.19	□□□□□ -0.62
CLDND1-231	ENST00000515620	EHD2	Q9NZN4	543 aa		11.19	□□□□□ -0.62
CLDND1-231	ENST00000515620	WDR3	Q9UNX4	943 aa	Known RBP eCLIP	11.19	□□□□□ -0.62
CLDND1-231	ENST00000515620	HECTD1	Q9ULT8	2610 aa		11.19	□□□□□ -0.62
CLDND1-231	ENST00000515620	MUC22	E2RYF6	1773 aa	Predicted RBP	11.18	□□□□□ -0.62
CLDND1-231	ENST00000515620	MYOF	Q9NZM1	2061 aa		11.18	□□□□□ -0.62
CLDND1-231	ENST00000515620	E2F8	A0AVK6	867 aa		11.18	□□□□□ -0.62
CLDND1-231	ENST00000515620		F8VP50	259 aa		11.18	□□□□□ -0.62
CLDND1-231	ENST00000515620	PLK4	O00444	970 aa		11.18	□□□□□ -0.62
CLDND1-231	ENST00000515620	GABRD	O14764	452 aa		11.18	□□□□□ -0.62
CLDND1-231	ENST00000515620	TRIM66	O15016	1216 aa		11.18	□□□□□ -0.62
CLDND1-231	ENST00000515620	BCAT2	O15382	392 aa	Predicted RBP	11.18	□□□□□ -0.62
CLDND1-231	ENST00000515620	KRT18	P05783	430 aa	Known RBP	11.18	□□□□□ -0.62
CLDND1-231	ENST00000515620	PPP3CC	P48454	512 aa		11.18	□□□□□ -0.62
CLDND1-231	ENST00000515620	ZNF131	P52739	623 aa		11.18	□□□□□ -0.62
CLDND1-231	ENST00000515620	GTF2B	Q00403	316 aa		11.18	□□□□□ -0.62
CLDND1-231	ENST00000515620	TAF10	Q12962	218 aa		11.18	□□□□□ -0.62
CLDND1-231	ENST00000515620	SMAD1	Q15797	465 aa	Known RBP	11.18	□□□□□ -0.62
CLDND1-231	ENST00000515620	SOWAHA	Q2M3V2	549 aa		11.18	□□□□□ -0.62
CLDND1-231	ENST00000515620	IL27RA	Q6UWB1	636 aa		11.18	□□□□□ -0.62
CLDND1-231	ENST00000515620	DHRS13	Q6UX07	377 aa		11.18	□□□□□ -0.62
CLDND1-231	ENST00000515620	TMEM25	Q86YD3	366 aa		11.18	□□□□□ -0.62
CLDND1-231	ENST00000515620	CSGALNACT2	Q8N6G5	542 aa		11.18	□□□□□ -0.62
CLDND1-231	ENST00000515620	TOP6BL	Q8N6T0	577 aa		11.18	□□□□□ -0.62
CLDND1-231	ENST00000515620	FBXO18	Q8NFZ0	1043 aa		11.18	□□□□□ -0.62
CLDND1-231	ENST00000515620	DNASE2B	Q8WZ79	361 aa		11.18	□□□□□ -0.62
CLDND1-231	ENST00000515620	OTUB2	Q96DC9	234 aa		11.18	□□□□□ -0.62
CLDND1-231	ENST00000515620	ZFR	Q96KR1	1074 aa	Known RBP	11.18	□□□□□ -0.62
CLDND1-231	ENST00000515620	SLITRK1	Q96PX8	696 aa		11.18	□□□□□ -0.62
CLDND1-231	ENST00000515620	FIZ1	Q96SL8	496 aa		11.18	□□□□□ -0.62
CLDND1-231	ENST00000515620	GABRG3	Q99928	467 aa		11.18	□□□□□ -0.62
CLDND1-231	ENST00000515620	GPR174	Q9BXC1	333 aa		11.18	□□□□□ -0.62
CLDND1-231	ENST00000515620	CRTAC1	Q9NQ79	661 aa		11.18	□□□□□ -0.62
CLDND1-231	ENST00000515620	SPHK2	Q9NRA0	654 aa		11.18	□□□□□ -0.62
CLDND1-231	ENST00000515620	ITGA11	Q9UKX5	1188 aa		11.18	□□□□□ -0.62
CLDND1-231	ENST00000515620	STARD13	Q9Y3M8	1113 aa		11.18	□□□□□ -0.62
CLDND1-231	ENST00000515620	STYXL1	Q9Y6J8	313 aa		11.18	□□□□□ -0.62
CLDND1-231	ENST00000515620	SHROOM3	Q8TF72	1996 aa		11.17	□□□□□ -0.62
CLDND1-231	ENST00000515620	GOLGA4	Q13439	2230 aa	Known RBP	11.17	□□□□□ -0.62
CLDND1-231	ENST00000515620	MYO18A	Q92614	2054 aa	Known RBP	11.17	□□□□□ -0.62
CLDND1-231	ENST00000515620	MYO18B	Q8IUG5	2567 aa		11.17	□□□□□ -0.62
CLDND1-231	ENST00000515620	HAX1	O00165	279 aa		11.17	□□□□□ -0.62
CLDND1-231	ENST00000515620	CAPN9	O14815	690 aa		11.17	□□□□□ -0.62
CLDND1-231	ENST00000515620	COCH	O43405	550 aa		11.17	□□□□□ -0.62
CLDND1-231	ENST00000515620	TBCA	O75347	108 aa	Known RBP	11.17	□□□□□ -0.62
CLDND1-231	ENST00000515620	IRF1	P10914	325 aa		11.17	□□□□□ -0.62
CLDND1-231	ENST00000515620	LMO2	P25791	158 aa		11.17	□□□□□ -0.62
CLDND1-231	ENST00000515620	ABCD1	P33897	745 aa		11.17	□□□□□ -0.62
CLDND1-231	ENST00000515620	NOP14	P78316	857 aa	Known RBP	11.17	□□□□□ -0.62
CLDND1-231	ENST00000515620	POU5F1	Q01860	360 aa	Known RBP	11.17	□□□□□ -0.62
CLDND1-231	ENST00000515620	MAPRE1	Q15691	268 aa	Known RBP	11.17	□□□□□ -0.62
CLDND1-231	ENST00000515620	DCAF12L1	Q5VU92	463 aa		11.17	□□□□□ -0.62
CLDND1-231	ENST00000515620	TDRD10	Q5VZ19	366 aa	Known RBP	11.17	□□□□□ -0.62
CLDND1-231	ENST00000515620	LRRC69	Q6ZNQ3	347 aa		11.17	□□□□□ -0.62
CLDND1-231	ENST00000515620	CCDC83	Q8IWF9	413 aa		11.17	□□□□□ -0.62
CLDND1-231	ENST00000515620	KCTD17	Q8N5Z5	321 aa		11.17	□□□□□ -0.62
CLDND1-231	ENST00000515620	LSM14A	Q8ND56	463 aa	Known RBP	11.17	□□□□□ -0.62
CLDND1-231	ENST00000515620	CXorf38	Q8TB03	319 aa		11.17	□□□□□ -0.62
CLDND1-231	ENST00000515620	SCFD1	Q8WVM8	642 aa		11.17	□□□□□ -0.62
CLDND1-231	ENST00000515620	KBTBD7	Q8WVZ9	684 aa		11.17	□□□□□ -0.62
CLDND1-231	ENST00000515620	NXPE2	Q96DL1	559 aa		11.17	□□□□□ -0.62
CLDND1-231	ENST00000515620	PCED1B	Q96HM7	432 aa		11.17	□□□□□ -0.62
CLDND1-231	ENST00000515620	CEP295NL	Q96MC4	621 aa		11.17	□□□□□ -0.62
CLDND1-231	ENST00000515620	FAM213A	Q9BRX8	229 aa		11.17	□□□□□ -0.62
CLDND1-231	ENST00000515620	MTMR12	Q9C0I1	747 aa		11.17	□□□□□ -0.62
CLDND1-231	ENST00000515620	CDH9	Q9ULB4	789 aa		11.17	□□□□□ -0.62
CLDND1-231	ENST00000515620	SH3BP1	Q9Y3L3	701 aa		11.17	□□□□□ -0.62
CLDND1-231	ENST00000515620	NFE2L3	Q9Y4A8	694 aa		11.17	□□□□□ -0.62
CLDND1-231	ENST00000515620	PCDHGB2	Q9Y5G2	931 aa		11.17	□□□□□ -0.62
CLDND1-231	ENST00000515620		A0A1B0GVT2	93 aa		11.16	□□□□□ -0.62
CLDND1-231	ENST00000515620	VWA3A	A6NCI4	1184 aa		11.16	□□□□□ -0.62
CLDND1-231	ENST00000515620	WASH3P	C4AMC7	463 aa		11.16	□□□□□ -0.62
CLDND1-231	ENST00000515620	PRRT4	C9JH25	899 aa		11.16	□□□□□ -0.62
CLDND1-231	ENST00000515620		E9PAM4	449 aa		11.16	□□□□□ -0.62
CLDND1-231	ENST00000515620	NEDD8-MDP1	E9PL57	170 aa		11.16	□□□□□ -0.62
CLDND1-231	ENST00000515620	TNFSF14	O43557	240 aa		11.16	□□□□□ -0.62
CLDND1-231	ENST00000515620	TLX3	O43711	291 aa	Predicted RBP	11.16	□□□□□ -0.62
CLDND1-231	ENST00000515620	PDGFRB	P09619	1106 aa		11.16	□□□□□ -0.62
CLDND1-231	ENST00000515620	ADSS	P30520	456 aa		11.16	□□□□□ -0.62
CLDND1-231	ENST00000515620	EIF2S3	P41091	472 aa	Known RBP	11.16	□□□□□ -0.62
CLDND1-231	ENST00000515620	CACNA2D1	P54289	1103 aa		11.16	□□□□□ -0.62
CLDND1-231	ENST00000515620	ANAPC15	P60006	121 aa		11.16	□□□□□ -0.62
CLDND1-231	ENST00000515620	RBP5	P82980	135 aa		11.16	□□□□□ -0.62
CLDND1-231	ENST00000515620	SEMG2	Q02383	582 aa		11.16	□□□□□ -0.62
CLDND1-231	ENST00000515620	CFHR1	Q03591	330 aa		11.16	□□□□□ -0.62
CLDND1-231	ENST00000515620	MYO1E	Q12965	1108 aa		11.16	□□□□□ -0.62
CLDND1-231	ENST00000515620	SUZ12	Q15022	739 aa	Known RBP	11.16	□□□□□ -0.62
CLDND1-231	ENST00000515620	PTPRN	Q16849	979 aa		11.16	□□□□□ -0.62
CLDND1-231	ENST00000515620	MDH1B	Q5I0G3	518 aa		11.16	□□□□□ -0.62
CLDND1-231	ENST00000515620	DBX2	Q6ZNG2	339 aa		11.16	□□□□□ -0.62
CLDND1-231	ENST00000515620	BRSK2	Q8IWQ3	736 aa		11.16	□□□□□ -0.62
CLDND1-231	ENST00000515620	ZSWIM2	Q8NEG5	633 aa		11.16	□□□□□ -0.62
CLDND1-231	ENST00000515620	CADM4	Q8NFZ8	388 aa		11.16	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 21 ms