RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 IQCA1LA6NCM1 817 aa13.1□□□□□ -0.31
USP53-209ENST00000514665 UPP2O95045 317 aa13.1□□□□□ -0.31
USP53-209ENST00000514665 TPH1P17752 444 aa13.1□□□□□ -0.31
USP53-209ENST00000514665 KCNA4P22459 653 aa13.1□□□□□ -0.31
USP53-209ENST00000514665 AMPD1P23109 780 aa13.1□□□□□ -0.31
USP53-209ENST00000514665 FMO1Q01740 532 aa13.1□□□□□ -0.31
USP53-209ENST00000514665 HGSNATQ68CP4 663 aa13.1□□□□□ -0.31
USP53-209ENST00000514665 TMEM161BQ8NDZ6 487 aa13.1□□□□□ -0.31
USP53-209ENST00000514665 HES6Q96HZ4 224 aa13.1□□□□□ -0.31
USP53-209ENST00000514665 CCDC134Q9H6E4 229 aa13.1□□□□□ -0.31
USP53-209ENST00000514665 CAAP1Q9H8G2 361 aa13.1□□□□□ -0.31
USP53-209ENST00000514665 CYP3A43Q9HB55 503 aa13.1□□□□□ -0.31
USP53-209ENST00000514665 PRDM5Q9NQX1 630 aaPredicted RBP13.1□□□□□ -0.31
USP53-209ENST00000514665 SETD4Q9NVD3 440 aa13.1□□□□□ -0.31
USP53-209ENST00000514665 SNTG2Q9NY99 539 aa13.1□□□□□ -0.31
USP53-209ENST00000514665 ZNF711Q9Y462 761 aa13.1□□□□□ -0.31
USP53-209ENST00000514665 SYNDIG1LA6NDD5 238 aa13.1□□□□□ -0.31
USP53-209ENST00000514665 GHRP10912 638 aa13.1□□□□□ -0.31
USP53-209ENST00000514665 CHRM3P20309 590 aa13.1□□□□□ -0.31
USP53-209ENST00000514665 VEPH1Q14D04 833 aa13.1□□□□□ -0.31
USP53-209ENST00000514665 NIPA1Q7RTP0 329 aa13.1□□□□□ -0.31
USP53-209ENST00000514665 VSIG10LQ86VR7 867 aa13.1□□□□□ -0.31
USP53-209ENST00000514665 CLEC4FQ8N1N0 589 aa13.1□□□□□ -0.31
USP53-209ENST00000514665 ADAM32Q8TC27 787 aa13.1□□□□□ -0.31
USP53-209ENST00000514665 HASPINQ8TF76 798 aa13.1□□□□□ -0.31
USP53-209ENST00000514665 ZNF75CPQ92670 426 aaPredicted RBP13.1□□□□□ -0.31
USP53-209ENST00000514665 RUVBL2Q9Y230 463 aaKnown RBP13.1□□□□□ -0.31
USP53-209ENST00000514665 SNX3O60493 162 aa13.09□□□□□ -0.31
USP53-209ENST00000514665 USP12O75317 370 aa13.09□□□□□ -0.31
USP53-209ENST00000514665 RANBP1P43487 201 aa13.09□□□□□ -0.31
USP53-209ENST00000514665 NME5P56597 212 aa13.09□□□□□ -0.31
USP53-209ENST00000514665 MAP3K7CLP57077 242 aa13.09□□□□□ -0.31
USP53-209ENST00000514665 RPL7AP62424 266 aaKnown RBP13.09□□□□□ -0.31
USP53-209ENST00000514665 MPP3Q13368 585 aa13.09□□□□□ -0.31
USP53-209ENST00000514665 PTK6Q13882 451 aa13.09□□□□□ -0.31
USP53-209ENST00000514665 KRT33BQ14525 404 aa13.09□□□□□ -0.31
USP53-209ENST00000514665 ERO1BQ86YB8 467 aa13.09□□□□□ -0.31
USP53-209ENST00000514665 MREGQ8N565 214 aa13.09□□□□□ -0.31
USP53-209ENST00000514665 EIF1ADQ8N9N8 165 aaKnown RBP13.09□□□□□ -0.31
USP53-209ENST00000514665 EDEM1Q92611 657 aa13.09□□□□□ -0.31
USP53-209ENST00000514665 CELF6Q96J87 481 aaKnown RBP13.09□□□□□ -0.31
USP53-209ENST00000514665 SRPK1Q96SB4 655 aaKnown RBP13.09□□□□□ -0.31
USP53-209ENST00000514665 DCDC2Q9UHG0 476 aa13.09□□□□□ -0.31
USP53-209ENST00000514665 DTNAQ9Y4J8 743 aa13.09□□□□□ -0.31
USP53-209ENST00000514665 ATRNO75882 1429 aa13.09□□□□□ -0.31
USP53-209ENST00000514665 SRP72O76094 671 aaKnown RBP13.09□□□□□ -0.31
USP53-209ENST00000514665 ACADSP16219 412 aa13.09□□□□□ -0.31
USP53-209ENST00000514665 AKAP5P24588 427 aa13.09□□□□□ -0.31
USP53-209ENST00000514665 ABCE1P61221 599 aaKnown RBP13.09□□□□□ -0.31
USP53-209ENST00000514665 CNGA2Q16280 664 aa13.09□□□□□ -0.31
USP53-209ENST00000514665 C10orf120Q5SQS8 335 aa13.09□□□□□ -0.31
USP53-209ENST00000514665 ERMARDQ5T6L9 678 aa13.09□□□□□ -0.31
USP53-209ENST00000514665 DUPD1Q68J44 220 aa13.09□□□□□ -0.31
USP53-209ENST00000514665 FAM117BQ6P1L5 589 aa13.09□□□□□ -0.31
USP53-209ENST00000514665 TTC30BQ8N4P2 665 aa13.09□□□□□ -0.31
USP53-209ENST00000514665 SAMD3Q8N6K7 520 aa13.09□□□□□ -0.31
USP53-209ENST00000514665 CEP19Q96LK0 163 aa13.09□□□□□ -0.31
USP53-209ENST00000514665 RPRD1AQ96P16 312 aaPredicted RBP13.09□□□□□ -0.31
USP53-209ENST00000514665 BARX2Q9UMQ3 279 aaPredicted RBP13.09□□□□□ -0.31
USP53-209ENST00000514665 ADAMTS3O15072 1205 aa13.09□□□□□ -0.31
USP53-209ENST00000514665 TM9SF1O15321 606 aa13.09□□□□□ -0.31
USP53-209ENST00000514665 ANXA9O76027 345 aa13.09□□□□□ -0.31
USP53-209ENST00000514665 RBL1P28749 1068 aa13.09□□□□□ -0.31
USP53-209ENST00000514665 CSE1LP55060 971 aaKnown RBP13.09□□□□□ -0.31
USP53-209ENST00000514665 GTF2BQ00403 316 aa13.09□□□□□ -0.31
USP53-209ENST00000514665 FBXO47Q5MNV8 452 aa13.09□□□□□ -0.31
USP53-209ENST00000514665 ZPBP2Q6X784 338 aa13.09□□□□□ -0.31
USP53-209ENST00000514665 SETD3Q86TU7 594 aaPredicted RBP13.09□□□□□ -0.31
USP53-209ENST00000514665 ADGRF2Q8IZF7 708 aa13.09□□□□□ -0.31
USP53-209ENST00000514665 CERKQ8TCT0 537 aa13.09□□□□□ -0.31
USP53-209ENST00000514665 KATNAL1Q9BW62 490 aa13.09□□□□□ -0.31
USP53-209ENST00000514665 TRPC7Q9HCX4 862 aa13.09□□□□□ -0.31
USP53-209ENST00000514665 NSMCE4AQ9NXX6 385 aa13.09□□□□□ -0.31
USP53-209ENST00000514665 CD274Q9NZQ7 290 aa13.09□□□□□ -0.31
USP53-209ENST00000514665 E5RJQ4 531 aa13.09□□□□□ -0.31
USP53-209ENST00000514665 ACKR2O00590 384 aa13.09□□□□□ -0.31
USP53-209ENST00000514665 ZNF189O75820 626 aaPredicted RBP13.09□□□□□ -0.31
USP53-209ENST00000514665 NFKBIAP25963 317 aa13.09□□□□□ -0.31
USP53-209ENST00000514665 CHKAP35790 457 aa13.09□□□□□ -0.31
USP53-209ENST00000514665 RAD51Q06609 339 aa13.09□□□□□ -0.31
USP53-209ENST00000514665 ZNF268Q14587 947 aaPredicted RBP13.09□□□□□ -0.31
USP53-209ENST00000514665 C15orf59Q2T9L4 293 aaPredicted RBP13.09□□□□□ -0.31
USP53-209ENST00000514665 KBTBD12Q3ZCT8 623 aa13.09□□□□□ -0.31
USP53-209ENST00000514665 N4BP2L1Q5TBK1 243 aaPredicted RBP13.09□□□□□ -0.31
USP53-209ENST00000514665 CD302Q8IX05 232 aa13.09□□□□□ -0.31
USP53-209ENST00000514665 RNF148Q8N7C7 305 aa13.09□□□□□ -0.31
USP53-209ENST00000514665 PARK7Q99497 189 aaKnown RBP13.09□□□□□ -0.31
USP53-209ENST00000514665 CCT7Q99832 543 aa13.09□□□□□ -0.31
USP53-209ENST00000514665 F8W8V4 182 aa13.08□□□□□ -0.32
USP53-209ENST00000514665 TIMM44O43615 452 aa13.08□□□□□ -0.32
USP53-209ENST00000514665 CDC25CP30307 473 aa13.08□□□□□ -0.32
USP53-209ENST00000514665 CCNJLQ8IV13 435 aa13.08□□□□□ -0.32
USP53-209ENST00000514665 OR5B17Q8NGF7 314 aa13.08□□□□□ -0.32
USP53-209ENST00000514665 INPP5DQ92835 1189 aa13.08□□□□□ -0.32
USP53-209ENST00000514665 TUBGCP3Q96CW5 907 aa13.08□□□□□ -0.32
USP53-209ENST00000514665 CNDP1Q96KN2 507 aa13.08□□□□□ -0.32
USP53-209ENST00000514665 P2RX7Q99572 595 aaKnown RBP13.08□□□□□ -0.32
USP53-209ENST00000514665 MYLK2Q9H1R3 596 aa13.08□□□□□ -0.32
USP53-209ENST00000514665 KIF17Q9P2E2 1029 aa13.08□□□□□ -0.32
USP53-209ENST00000514665 PKP3Q9Y446 797 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms