RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 SCAMP5Q8TAC9 235 aa7.56□□□□□ -1.2
NUP54-204ENST00000506098 FEZF2Q8TBJ5 459 aa7.56□□□□□ -1.2
NUP54-204ENST00000506098 FNIP1Q8TF40 1166 aa7.56□□□□□ -1.2
NUP54-204ENST00000506098 CLEC4CQ8WTT0 213 aa7.56□□□□□ -1.2
NUP54-204ENST00000506098 OVCA2Q8WZ82 227 aa7.56□□□□□ -1.2
NUP54-204ENST00000506098 PSMG2Q969U7 264 aa7.56□□□□□ -1.2
NUP54-204ENST00000506098 PIWIL1Q96J94 861 aaKnown RBP7.56□□□□□ -1.2
NUP54-204ENST00000506098 SEPT5Q99719 369 aaPredicted RBP7.56□□□□□ -1.2
NUP54-204ENST00000506098 NUP85Q9BW27 656 aa7.56□□□□□ -1.2
NUP54-204ENST00000506098 ULBP1Q9BZM6 244 aa7.56□□□□□ -1.2
NUP54-204ENST00000506098 NSUN3Q9H649 340 aaKnown RBP7.56□□□□□ -1.2
NUP54-204ENST00000506098 SYNCQ9H7C4 482 aa7.56□□□□□ -1.2
NUP54-204ENST00000506098 OSGEPQ9NPF4 335 aa7.56□□□□□ -1.2
NUP54-204ENST00000506098 MYO1AQ9UBC5 1043 aa7.56□□□□□ -1.2
NUP54-204ENST00000506098 LCMT1Q9UIC8 334 aa7.56□□□□□ -1.2
NUP54-204ENST00000506098 COG5Q9UP83 839 aa7.56□□□□□ -1.2
NUP54-204ENST00000506098 C2CD4BA6NLJ0 364 aa7.55□□□□□ -1.2
NUP54-204ENST00000506098 YJEFN3A6XGL0 299 aa7.55□□□□□ -1.2
NUP54-204ENST00000506098 E7ENQ6 273 aa7.55□□□□□ -1.2
NUP54-204ENST00000506098 PIK3R2O00459 728 aa7.55□□□□□ -1.2
NUP54-204ENST00000506098 SOX1O00570 391 aaPredicted RBP7.55□□□□□ -1.2
NUP54-204ENST00000506098 HSF2BPO75031 334 aa7.55□□□□□ -1.2
NUP54-204ENST00000506098 LTFP02788 710 aa7.55□□□□□ -1.2
NUP54-204ENST00000506098 C8AP07357 584 aa7.55□□□□□ -1.2
NUP54-204ENST00000506098 HNRNPA1P09651 372 aaKnown RBP eCLIP7.55□□□□□ -1.2
NUP54-204ENST00000506098 USP17L7P0C7H9 530 aa7.55□□□□□ -1.2
NUP54-204ENST00000506098 SPATA31D3P0C874 917 aa7.55□□□□□ -1.2
NUP54-204ENST00000506098 KRT3P12035 628 aa7.55□□□□□ -1.2
NUP54-204ENST00000506098 EPCAMP16422 314 aa7.55□□□□□ -1.2
NUP54-204ENST00000506098 RFC1P35251 1148 aaPredicted RBP7.55□□□□□ -1.2
NUP54-204ENST00000506098 PPP3CCP48454 512 aa7.55□□□□□ -1.2
NUP54-204ENST00000506098 NRIP1P48552 1158 aa7.55□□□□□ -1.2
NUP54-204ENST00000506098 EPHA5P54756 1037 aa7.55□□□□□ -1.2
NUP54-204ENST00000506098 USP46P62068 366 aa7.55□□□□□ -1.2
NUP54-204ENST00000506098 RPL7AP62424 266 aaKnown RBP7.55□□□□□ -1.2
NUP54-204ENST00000506098 YWHAZP63104 245 aaKnown RBP7.55□□□□□ -1.2
NUP54-204ENST00000506098 TWF1Q12792 350 aa7.55□□□□□ -1.2
NUP54-204ENST00000506098 VEPH1Q14D04 833 aa7.55□□□□□ -1.2
NUP54-204ENST00000506098 ACAP1Q15027 740 aa7.55□□□□□ -1.2
NUP54-204ENST00000506098 IFI16Q16666 785 aaKnown RBP7.55□□□□□ -1.2
NUP54-204ENST00000506098 ARHGAP29Q52LW3 1261 aa7.55□□□□□ -1.2
NUP54-204ENST00000506098 FAM102AQ5T9C2 384 aaPredicted RBP7.55□□□□□ -1.2
NUP54-204ENST00000506098 SDHAF4Q5VUM1 108 aa7.55□□□□□ -1.2
NUP54-204ENST00000506098 LLGL2Q6P1M3 1020 aa7.55□□□□□ -1.2
NUP54-204ENST00000506098 DNAJC24Q6P3W2 148 aa7.55□□□□□ -1.2
NUP54-204ENST00000506098 SPATA31D4Q6ZUB0 917 aa7.55□□□□□ -1.2
NUP54-204ENST00000506098 BNIPLQ7Z465 357 aa7.55□□□□□ -1.2
NUP54-204ENST00000506098 SLFN11Q7Z7L1 901 aa7.55□□□□□ -1.2
NUP54-204ENST00000506098 ITIH5Q86UX2 942 aa7.55□□□□□ -1.2
NUP54-204ENST00000506098 MON1AQ86VX9 555 aa7.55□□□□□ -1.2
NUP54-204ENST00000506098 ARHGAP18Q8N392 663 aa7.55□□□□□ -1.2
NUP54-204ENST00000506098 NIPA2Q8N8Q9 360 aa7.55□□□□□ -1.2
NUP54-204ENST00000506098 PDZD8Q8NEN9 1154 aa7.55□□□□□ -1.2
NUP54-204ENST00000506098 TPCN2Q8NHX9 752 aa7.55□□□□□ -1.2
NUP54-204ENST00000506098 JOSD2Q8TAC2 188 aa7.55□□□□□ -1.2
NUP54-204ENST00000506098 SLC7A14Q8TBB6 771 aa7.55□□□□□ -1.2
NUP54-204ENST00000506098 ZNF564Q8TBZ8 553 aaPredicted RBP7.55□□□□□ -1.2
NUP54-204ENST00000506098 GIPC2Q8TF65 315 aa7.55□□□□□ -1.2
NUP54-204ENST00000506098 PPP2R3CQ969Q6 453 aa7.55□□□□□ -1.2
NUP54-204ENST00000506098 NT5C3BQ969T7 300 aa7.55□□□□□ -1.2
NUP54-204ENST00000506098 SLC2A13Q96QE2 648 aa7.55□□□□□ -1.2
NUP54-204ENST00000506098 DDX23Q9BUQ8 820 aaKnown RBP7.55□□□□□ -1.2
NUP54-204ENST00000506098 TRIM62Q9BVG3 475 aa7.55□□□□□ -1.2
NUP54-204ENST00000506098 SELENOOQ9BVL4 669 aa7.55□□□□□ -1.2
NUP54-204ENST00000506098 LRRC3Q9BY71 257 aa7.55□□□□□ -1.2
NUP54-204ENST00000506098 TLE6Q9H808 572 aa7.55□□□□□ -1.2
NUP54-204ENST00000506098 LZTFL1Q9NQ48 299 aa7.55□□□□□ -1.2
NUP54-204ENST00000506098 MAN1C1Q9NR34 630 aa7.55□□□□□ -1.2
NUP54-204ENST00000506098 METTL5Q9NRN9 209 aaKnown RBP7.55□□□□□ -1.2
NUP54-204ENST00000506098 ABCC13Q9NSE7 274 aa7.55□□□□□ -1.2
NUP54-204ENST00000506098 ZDHHC7Q9NXF8 308 aa7.55□□□□□ -1.2
NUP54-204ENST00000506098 TRMT1Q9NXH9 659 aaKnown RBP7.55□□□□□ -1.2
NUP54-204ENST00000506098 RRN3Q9NYV6 651 aa7.55□□□□□ -1.2
NUP54-204ENST00000506098 CTTNBP2NLQ9P2B4 639 aa7.55□□□□□ -1.2
NUP54-204ENST00000506098 UXTQ9UBK9 157 aaPredicted RBP7.55□□□□□ -1.2
NUP54-204ENST00000506098 TRIM10Q9UDY6 481 aa7.55□□□□□ -1.2
NUP54-204ENST00000506098 GUCA1BQ9UMX6 200 aa7.55□□□□□ -1.2
NUP54-204ENST00000506098 HCFC2Q9Y5Z7 792 aa7.55□□□□□ -1.2
NUP54-204ENST00000506098 NYNRINQ9P2P1 1898 aaKnown RBP7.55□□□□□ -1.2
NUP54-204ENST00000506098 KIAA1549LQ6ZVL6 1849 aa7.55□□□□□ -1.2
NUP54-204ENST00000506098 FAM170AA1A519 330 aa7.54□□□□□ -1.2
NUP54-204ENST00000506098 GOLGA8SH3BPF8 625 aa7.54□□□□□ -1.2
NUP54-204ENST00000506098 DPYSL4O14531 572 aa7.54□□□□□ -1.2
NUP54-204ENST00000506098 PER2O15055 1255 aa7.54□□□□□ -1.2
NUP54-204ENST00000506098 BUB1O43683 1085 aa7.54□□□□□ -1.2
NUP54-204ENST00000506098 ZNF500O60304 480 aaPredicted RBP7.54□□□□□ -1.2
NUP54-204ENST00000506098 DAB1O75553 588 aa7.54□□□□□ -1.2
NUP54-204ENST00000506098 ENDOD1O94919 500 aa7.54□□□□□ -1.2
NUP54-204ENST00000506098 LRG1P02750 347 aa7.54□□□□□ -1.2
NUP54-204ENST00000506098 F11P03951 625 aa7.54□□□□□ -1.2
NUP54-204ENST00000506098 FYNP06241 537 aa7.54□□□□□ -1.2
NUP54-204ENST00000506098 MAN1A1P33908 653 aa7.54□□□□□ -1.2
NUP54-204ENST00000506098 NOS2P35228 1153 aa7.54□□□□□ -1.2
NUP54-204ENST00000506098 MATKP42679 507 aa7.54□□□□□ -1.2
NUP54-204ENST00000506098 PTPN9P43378 593 aa7.54□□□□□ -1.2
NUP54-204ENST00000506098 YWHAGP61981 247 aaKnown RBP eCLIP7.54□□□□□ -1.2
NUP54-204ENST00000506098 ZNF252P-AS1Q0IIN9 211 aa7.54□□□□□ -1.2
NUP54-204ENST00000506098 HYAL1Q12794 435 aa7.54□□□□□ -1.2
NUP54-204ENST00000506098 TAF10Q12962 218 aa7.54□□□□□ -1.2
NUP54-204ENST00000506098 ADAM15Q13444 863 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms