RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 NCAM1P13591 858 aa16.89■□□□□ 0.29
CCDC88B-209ENST00000494080 MARCKSL1P49006 195 aa16.89■□□□□ 0.29
CCDC88B-209ENST00000494080 AQP5P55064 265 aa16.89■□□□□ 0.29
CCDC88B-209ENST00000494080 RNF135Q8IUD6 432 aa16.89■□□□□ 0.29
CCDC88B-209ENST00000494080 TCP10LQ8TDR4 215 aa16.89■□□□□ 0.29
CCDC88B-209ENST00000494080 TMEM176AQ96HP8 235 aa16.89■□□□□ 0.29
CCDC88B-209ENST00000494080 GORASP1Q9BQQ3 440 aa16.89■□□□□ 0.29
CCDC88B-209ENST00000494080 CCDC134Q9H6E4 229 aa16.89■□□□□ 0.29
CCDC88B-209ENST00000494080 CHST7Q9NS84 486 aa16.89■□□□□ 0.29
CCDC88B-209ENST00000494080 SNTG2Q9NY99 539 aa16.89■□□□□ 0.29
CCDC88B-209ENST00000494080 PAK5Q9P286 719 aa16.89■□□□□ 0.29
CCDC88B-209ENST00000494080 PRG3Q9Y2Y8 225 aaPredicted RBP16.89■□□□□ 0.29
CCDC88B-209ENST00000494080 ABCC6O95255 1503 aa16.89■□□□□ 0.29
CCDC88B-209ENST00000494080 PDE4DIPQ5VU43 2346 aa16.88■□□□□ 0.29
CCDC88B-209ENST00000494080 ITPRIPL1Q6GPH6 555 aa16.88■□□□□ 0.29
CCDC88B-209ENST00000494080 RAB44Q7Z6P3 723 aaPredicted RBP16.88■□□□□ 0.29
CCDC88B-209ENST00000494080 FAM81AQ8TBF8 368 aa16.88■□□□□ 0.29
CCDC88B-209ENST00000494080 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.88■□□□□ 0.29
CCDC88B-209ENST00000494080 E2F8A0AVK6 867 aa16.88■□□□□ 0.29
CCDC88B-209ENST00000494080 LIN7AO14910 233 aaPredicted RBP16.88■□□□□ 0.29
CCDC88B-209ENST00000494080 HMBSP08397 361 aa16.88■□□□□ 0.29
CCDC88B-209ENST00000494080 ETS2P15036 469 aa16.88■□□□□ 0.29
CCDC88B-209ENST00000494080 DRG2P55039 364 aaKnown RBP16.88■□□□□ 0.29
CCDC88B-209ENST00000494080 TMPRSS6Q8IU80 811 aa16.88■□□□□ 0.29
CCDC88B-209ENST00000494080 RXFP2Q8WXD0 754 aa16.88■□□□□ 0.29
CCDC88B-209ENST00000494080 ING2Q9H160 280 aa16.88■□□□□ 0.29
CCDC88B-209ENST00000494080 SAR1AQ9NR31 198 aa16.88■□□□□ 0.29
CCDC88B-209ENST00000494080 AKAP5P24588 427 aa16.88■□□□□ 0.29
CCDC88B-209ENST00000494080 PTGER2P43116 358 aa16.88■□□□□ 0.29
CCDC88B-209ENST00000494080 CPT1AP50416 773 aa16.88■□□□□ 0.29
CCDC88B-209ENST00000494080 KPNA2P52292 529 aaKnown RBP16.88■□□□□ 0.29
CCDC88B-209ENST00000494080 MROH9Q5TGP6 573 aa16.88■□□□□ 0.29
CCDC88B-209ENST00000494080 CWF19L1Q69YN2 538 aaKnown RBP16.88■□□□□ 0.29
CCDC88B-209ENST00000494080 HES6Q96HZ4 224 aa16.88■□□□□ 0.29
CCDC88B-209ENST00000494080 STARD13Q9Y3M8 1113 aa16.88■□□□□ 0.29
CCDC88B-209ENST00000494080 MYH2Q9UKX2 1941 aa16.88■□□□□ 0.29
CCDC88B-209ENST00000494080 EEF2KO00418 725 aaKnown RBP16.87■□□□□ 0.29
CCDC88B-209ENST00000494080 GJB1P08034 283 aa16.87■□□□□ 0.29
CCDC88B-209ENST00000494080 YY1P25490 414 aa16.87■□□□□ 0.29
CCDC88B-209ENST00000494080 BMT2Q1RMZ1 405 aa16.87■□□□□ 0.29
CCDC88B-209ENST00000494080 SLC45A4Q5BKX6 768 aa16.87■□□□□ 0.29
CCDC88B-209ENST00000494080 POTEAQ6S8J7 498 aa16.87■□□□□ 0.29
CCDC88B-209ENST00000494080 FAM131BQ86XD5 332 aa16.87■□□□□ 0.29
CCDC88B-209ENST00000494080 EXD1Q8NHP7 514 aa16.87■□□□□ 0.29
CCDC88B-209ENST00000494080 TMA16Q96EY4 203 aaKnown RBP16.87■□□□□ 0.29
CCDC88B-209ENST00000494080 SIKE1Q9BRV8 207 aa16.87■□□□□ 0.29
CCDC88B-209ENST00000494080 KLHL4Q9C0H6 718 aa16.87■□□□□ 0.29
CCDC88B-209ENST00000494080 NMRK1Q9NWW6 199 aa16.87■□□□□ 0.29
CCDC88B-209ENST00000494080 ZNF212Q9UDV6 495 aa16.87■□□□□ 0.29
CCDC88B-209ENST00000494080 FKBP6O75344 327 aa16.87■□□□□ 0.29
CCDC88B-209ENST00000494080 MORF4L2Q15014 288 aa16.87■□□□□ 0.29
CCDC88B-209ENST00000494080 DCAF4L1Q3SXM0 396 aa16.87■□□□□ 0.29
CCDC88B-209ENST00000494080 SPOCD1Q6ZMY3 1216 aa16.87■□□□□ 0.29
CCDC88B-209ENST00000494080 SLC9A9Q8IVB4 645 aa16.87■□□□□ 0.29
CCDC88B-209ENST00000494080 PPIL6Q8IXY8 311 aa16.87■□□□□ 0.29
CCDC88B-209ENST00000494080 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP16.87■□□□□ 0.293e-9■■■■■ 348.1
CCDC88B-209ENST00000494080 FBXO36Q8NEA4 188 aa16.87■□□□□ 0.29
CCDC88B-209ENST00000494080 FAM172AQ8WUF8 416 aa16.87■□□□□ 0.29
CCDC88B-209ENST00000494080 TRAPPC9Q96Q05 1148 aa16.87■□□□□ 0.29
CCDC88B-209ENST00000494080 PAMP19021 973 aa16.87■□□□□ 0.29
CCDC88B-209ENST00000494080 C1QBPQ07021 282 aaKnown RBP16.87■□□□□ 0.29
CCDC88B-209ENST00000494080 GRIK4Q16099 956 aa16.87■□□□□ 0.29
CCDC88B-209ENST00000494080 ALG3Q92685 438 aa16.87■□□□□ 0.29
CCDC88B-209ENST00000494080 RMDN2Q96LZ7 410 aa16.87■□□□□ 0.29
CCDC88B-209ENST00000494080 ZNF518BQ9C0D4 1074 aa16.87■□□□□ 0.29
CCDC88B-209ENST00000494080 SP110Q9HB58 689 aa16.87■□□□□ 0.29
CCDC88B-209ENST00000494080 TSC22D4Q9Y3Q8 395 aa16.87■□□□□ 0.29
CCDC88B-209ENST00000494080 IGLV3-22A0A075B6J6 115 aa16.87■□□□□ 0.29
CCDC88B-209ENST00000494080 C17orf102A2RUQ5 167 aa16.87■□□□□ 0.29
CCDC88B-209ENST00000494080 M0QYT0 321 aa16.87■□□□□ 0.29
CCDC88B-209ENST00000494080 KDM1AO60341 852 aa16.87■□□□□ 0.29
CCDC88B-209ENST00000494080 DGKIO75912 1065 aa16.87■□□□□ 0.29
CCDC88B-209ENST00000494080 RPA3P35244 121 aaPredicted RBP16.87■□□□□ 0.29
CCDC88B-209ENST00000494080 NDST1P52848 882 aa16.87■□□□□ 0.29
CCDC88B-209ENST00000494080 EFHC1Q5JVL4 640 aa16.87■□□□□ 0.29
CCDC88B-209ENST00000494080 KLRG1Q96E93 195 aa16.87■□□□□ 0.29
CCDC88B-209ENST00000494080 PWWP2AQ96N64 755 aa16.87■□□□□ 0.29
CCDC88B-209ENST00000494080 TMEM165Q9HC07 324 aa16.87■□□□□ 0.29
CCDC88B-209ENST00000494080 LCA5LO95447 670 aa16.86■□□□□ 0.29
CCDC88B-209ENST00000494080 PCSK1P29120 753 aa16.86■□□□□ 0.29
CCDC88B-209ENST00000494080 THPOP40225 353 aa16.86■□□□□ 0.29
CCDC88B-209ENST00000494080 RIOX2Q8IUF8 465 aa16.86■□□□□ 0.29
CCDC88B-209ENST00000494080 ERVK-5Q9HDB9 667 aa16.86■□□□□ 0.29
CCDC88B-209ENST00000494080 GTSE1Q9NYZ3 720 aa16.86■□□□□ 0.29
CCDC88B-209ENST00000494080 TAGLN3Q9UI15 199 aa16.86■□□□□ 0.29
CCDC88B-209ENST00000494080 SLC24A2Q9UI40 661 aa16.86■□□□□ 0.29
CCDC88B-209ENST00000494080 USP18Q9UMW8 372 aa16.86■□□□□ 0.29
CCDC88B-209ENST00000494080 M0R2N6 131 aa16.86■□□□□ 0.29
CCDC88B-209ENST00000494080 GNGT2O14610 69 aa16.86■□□□□ 0.29
CCDC88B-209ENST00000494080 TADA2AO75478 443 aa16.86■□□□□ 0.29
CCDC88B-209ENST00000494080 XPAP23025 273 aaPredicted RBP16.86■□□□□ 0.29
CCDC88B-209ENST00000494080 SKIV2L2P42285 1042 aaKnown RBP16.86■□□□□ 0.29
CCDC88B-209ENST00000494080 ACADSBP45954 432 aa16.86■□□□□ 0.29
CCDC88B-209ENST00000494080 MFSD7Q6UXD7 560 aa16.86■□□□□ 0.29
CCDC88B-209ENST00000494080 MAB21L3Q8N8X9 362 aa16.86■□□□□ 0.29
CCDC88B-209ENST00000494080 OR5B17Q8NGF7 314 aa16.86■□□□□ 0.29
CCDC88B-209ENST00000494080 DNAJB3Q8WWF6 145 aa16.86■□□□□ 0.29
CCDC88B-209ENST00000494080 FHDC1Q9C0D6 1143 aaPredicted RBP16.86■□□□□ 0.29
CCDC88B-209ENST00000494080 SLC38A7Q9NVC3 462 aa16.86■□□□□ 0.29
CCDC88B-209ENST00000494080 DDIT4Q9NX09 232 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms