RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 SATB2Q9UPW6 733 aa5.18□□□□□ -1.58
USP4-209ENST00000475873 TNFSF13BQ9Y275 285 aa5.18□□□□□ -1.58
USP4-209ENST00000475873 MYH10P35580 1976 aa5.17□□□□□ -1.58
USP4-209ENST00000475873 SHANK1Q9Y566 2161 aa5.17□□□□□ -1.58
USP4-209ENST00000475873 LY6G6EA0A0G2JKS1 128 aa5.17□□□□□ -1.58
USP4-209ENST00000475873 OPA1O60313 960 aa5.17□□□□□ -1.58
USP4-209ENST00000475873 TSPAN3O60637 253 aa5.17□□□□□ -1.58
USP4-209ENST00000475873 DKC1O60832 514 aaKnown RBP eCLIP5.17□□□□□ -1.58
USP4-209ENST00000475873 CSO75390 466 aaKnown RBP5.17□□□□□ -1.58
USP4-209ENST00000475873 OLFM2O95897 454 aa5.17□□□□□ -1.58
USP4-209ENST00000475873 CYP11A1P05108 521 aa5.17□□□□□ -1.58
USP4-209ENST00000475873 IGHV4-34P06331 123 aa5.17□□□□□ -1.58
USP4-209ENST00000475873 ITGAVP06756 1048 aa5.17□□□□□ -1.58
USP4-209ENST00000475873 NFICP08651 508 aa5.17□□□□□ -1.58
USP4-209ENST00000475873 CSH1P0DML2 217 aa5.17□□□□□ -1.58
USP4-209ENST00000475873 CSH2P0DML3 217 aa5.17□□□□□ -1.58
USP4-209ENST00000475873 HDCP19113 662 aa5.17□□□□□ -1.58
USP4-209ENST00000475873 MCM5P33992 734 aa5.17□□□□□ -1.58
USP4-209ENST00000475873 FOSBP53539 338 aa5.17□□□□□ -1.58
USP4-209ENST00000475873 YARSP54577 528 aaKnown RBP5.17□□□□□ -1.58
USP4-209ENST00000475873 LILRA4P59901 499 aa5.17□□□□□ -1.58
USP4-209ENST00000475873 USP46P62068 366 aa5.17□□□□□ -1.58
USP4-209ENST00000475873 NCAPHQ15003 741 aa5.17□□□□□ -1.58
USP4-209ENST00000475873 INF2Q27J81 1249 aa5.17□□□□□ -1.58
USP4-209ENST00000475873 INAVAQ3KP66 663 aa5.17□□□□□ -1.58
USP4-209ENST00000475873 ZNF568Q3ZCX4 644 aa5.17□□□□□ -1.58
USP4-209ENST00000475873 C3orf38Q5JPI3 329 aa5.17□□□□□ -1.58
USP4-209ENST00000475873 NCAPH2Q6IBW4 605 aa5.17□□□□□ -1.58
USP4-209ENST00000475873 ARMCX5Q6P1M9 558 aa5.17□□□□□ -1.58
USP4-209ENST00000475873 MOXD1Q6UVY6 613 aa5.17□□□□□ -1.58
USP4-209ENST00000475873 ZC3H18Q86VM9 953 aaKnown RBP5.17□□□□□ -1.58
USP4-209ENST00000475873 TMEM25Q86YD3 366 aa5.17□□□□□ -1.58
USP4-209ENST00000475873 TMPRSS6Q8IU80 811 aa5.17□□□□□ -1.58
USP4-209ENST00000475873 ZBTB8OSQ8IWT0 167 aa5.17□□□□□ -1.58
USP4-209ENST00000475873 LSMEM2Q8N112 164 aa5.17□□□□□ -1.58
USP4-209ENST00000475873 SPPL2BQ8TCT7 592 aa5.17□□□□□ -1.58
USP4-209ENST00000475873 SGF29Q96ES7 293 aa5.17□□□□□ -1.58
USP4-209ENST00000475873 SLC6A18Q96N87 628 aa5.17□□□□□ -1.58
USP4-209ENST00000475873 PKMYT1Q99640 499 aa5.17□□□□□ -1.58
USP4-209ENST00000475873 ACO2Q99798 780 aaKnown RBP5.17□□□□□ -1.58
USP4-209ENST00000475873 EIF2AK1Q9BQI3 630 aaKnown RBP5.17□□□□□ -1.58
USP4-209ENST00000475873 ARHGAP9Q9BRR9 750 aa5.17□□□□□ -1.58
USP4-209ENST00000475873 CCDC94Q9BW85 323 aaPredicted RBP5.17□□□□□ -1.58
USP4-209ENST00000475873 HAPLN2Q9GZV7 340 aa5.17□□□□□ -1.58
USP4-209ENST00000475873 KDM4CQ9H3R0 1056 aa5.17□□□□□ -1.58
USP4-209ENST00000475873 OSBPL3Q9H4L5 887 aa5.17□□□□□ -1.58
USP4-209ENST00000475873 TMPRSS4Q9NRS4 437 aa5.17□□□□□ -1.58
USP4-209ENST00000475873 TOPORSQ9NS56 1045 aaPredicted RBP5.17□□□□□ -1.58
USP4-209ENST00000475873 ANKEF1Q9NU02 776 aa5.17□□□□□ -1.58
USP4-209ENST00000475873 RBM28Q9NW13 759 aaKnown RBP5.17□□□□□ -1.58
USP4-209ENST00000475873 CFAP97Q9P2B7 532 aa5.17□□□□□ -1.58
USP4-209ENST00000475873 LRWD1Q9UFC0 647 aa5.17□□□□□ -1.58
USP4-209ENST00000475873 RBM8AQ9Y5S9 174 aaKnown RBP5.17□□□□□ -1.58
USP4-209ENST00000475873 CPQQ9Y646 472 aa5.17□□□□□ -1.58
USP4-209ENST00000475873 U3KQA8 63 aa5.17□□□□□ -1.58
USP4-209ENST00000475873 A0A1B0GVM2 712 aa5.16□□□□□ -1.58
USP4-209ENST00000475873 A0A1W2PR77 199 aa5.16□□□□□ -1.58
USP4-209ENST00000475873 TTC26A0AVF1 554 aa5.16□□□□□ -1.58
USP4-209ENST00000475873 VPS37CA5D8V6 355 aaPredicted RBP5.16□□□□□ -1.58
USP4-209ENST00000475873 GOLGA8AA7E2F4 631 aa5.16□□□□□ -1.58
USP4-209ENST00000475873 GOLGA8BA8MQT2 603 aa5.16□□□□□ -1.58
USP4-209ENST00000475873 PALM2-AKAP2B1ALY0 433 aaPredicted RBP5.16□□□□□ -1.58
USP4-209ENST00000475873 C10orf142B7Z368 130 aa5.16□□□□□ -1.58
USP4-209ENST00000475873 HIP1O00291 1037 aa5.16□□□□□ -1.58
USP4-209ENST00000475873 LAD1O00515 517 aa5.16□□□□□ -1.58
USP4-209ENST00000475873 VILLO15195 856 aa5.16□□□□□ -1.58
USP4-209ENST00000475873 MTSS1O43312 755 aa5.16□□□□□ -1.58
USP4-209ENST00000475873 HCRTO43612 131 aa5.16□□□□□ -1.58
USP4-209ENST00000475873 SIGLEC6O43699 453 aa5.16□□□□□ -1.58
USP4-209ENST00000475873 LZTS3O60299 673 aaPredicted RBP5.16□□□□□ -1.58
USP4-209ENST00000475873 DIAPH2O60879 1101 aa5.16□□□□□ -1.58
USP4-209ENST00000475873 RTN2O75298 545 aa5.16□□□□□ -1.58
USP4-209ENST00000475873 AGFG2O95081 481 aa5.16□□□□□ -1.58
USP4-209ENST00000475873 ADH1CP00326 375 aa5.16□□□□□ -1.58
USP4-209ENST00000475873 OAS1P00973 400 aaKnown RBP5.16□□□□□ -1.58
USP4-209ENST00000475873 CXCL8P10145 99 aa5.16□□□□□ -1.58
USP4-209ENST00000475873 HOXB4P17483 251 aaPredicted RBP5.16□□□□□ -1.58
USP4-209ENST00000475873 CYP2F1P24903 491 aa5.16□□□□□ -1.58
USP4-209ENST00000475873 GNA11P29992 359 aa5.16□□□□□ -1.58
USP4-209ENST00000475873 NAMPTP43490 491 aa5.16□□□□□ -1.58
USP4-209ENST00000475873 SLC7A9P82251 487 aa5.16□□□□□ -1.58
USP4-209ENST00000475873 ENPP2Q13822 863 aa5.16□□□□□ -1.58
USP4-209ENST00000475873 KCNB1Q14721 858 aa5.16□□□□□ -1.58
USP4-209ENST00000475873 TEAD4Q15561 434 aa5.16□□□□□ -1.58
USP4-209ENST00000475873 WSCD1Q658N2 575 aa5.16□□□□□ -1.58
USP4-209ENST00000475873 DSTYKQ6XUX3 929 aa5.16□□□□□ -1.58
USP4-209ENST00000475873 USP53Q70EK8 1073 aa5.16□□□□□ -1.58
USP4-209ENST00000475873 CLEC14AQ86T13 490 aa5.16□□□□□ -1.58
USP4-209ENST00000475873 SPATA20Q8TB22 786 aa5.16□□□□□ -1.58
USP4-209ENST00000475873 SSC4DQ8WTU2 575 aa5.16□□□□□ -1.58
USP4-209ENST00000475873 ATXN7L3BQ96GX2 97 aa5.16□□□□□ -1.58
USP4-209ENST00000475873 NUP58Q9BVL2 599 aa5.16□□□□□ -1.58
USP4-209ENST00000475873 TARS2Q9BW92 718 aaKnown RBP5.16□□□□□ -1.58
USP4-209ENST00000475873 C2orf40Q9H1Z8 148 aa5.16□□□□□ -1.58
USP4-209ENST00000475873 SLKQ9H2G2 1235 aaPredicted RBP5.16□□□□□ -1.58
USP4-209ENST00000475873 DEC1Q9P2X7 70 aa5.16□□□□□ -1.58
USP4-209ENST00000475873 TJP2Q9UDY2 1190 aa5.16□□□□□ -1.58
USP4-209ENST00000475873 PCDHGA4Q9Y5G9 962 aa5.16□□□□□ -1.58
USP4-209ENST00000475873 STON1Q9Y6Q2 735 aa5.16□□□□□ -1.58
USP4-209ENST00000475873 ZNF469Q96JG9 3925 aaPredicted RBP5.16□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms