RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 LAIR1Q6GTX8 287 aa4.91□□□□□ -1.62
VPS13A-210ENST00000471439 DRICH1Q6PGQ1 229 aaPredicted RBP4.91□□□□□ -1.62
VPS13A-210ENST00000471439 CLEC4GQ6UXB4 293 aa4.91□□□□□ -1.62
VPS13A-210ENST00000471439 DGKHQ86XP1 1220 aa4.91□□□□□ -1.62
VPS13A-210ENST00000471439 ULK2Q8IYT8 1036 aa4.91□□□□□ -1.62
VPS13A-210ENST00000471439 DCBLD1Q8N8Z6 715 aa4.91□□□□□ -1.62
VPS13A-210ENST00000471439 GPR150Q8NGU9 434 aa4.91□□□□□ -1.62
VPS13A-210ENST00000471439 TMX3Q96JJ7 454 aa4.91□□□□□ -1.62
VPS13A-210ENST00000471439 ZSWIM1Q9BR11 485 aa4.91□□□□□ -1.62
VPS13A-210ENST00000471439 GOLGA6AQ9NYA3 693 aa4.91□□□□□ -1.62
VPS13A-210ENST00000471439 SLC23A1Q9UHI7 598 aa4.91□□□□□ -1.62
VPS13A-210ENST00000471439 ACTL7AQ9Y615 435 aa4.91□□□□□ -1.62
VPS13A-210ENST00000471439 RALGAPA2Q2PPJ7 1873 aa4.9□□□□□ -1.62
VPS13A-210ENST00000471439 CTNND1O60716 968 aaKnown RBP4.9□□□□□ -1.63
VPS13A-210ENST00000471439 RAMP2O60895 175 aa4.9□□□□□ -1.63
VPS13A-210ENST00000471439 DTNBO60941 627 aa4.9□□□□□ -1.63
VPS13A-210ENST00000471439 STARD3NLO95772 234 aa4.9□□□□□ -1.63
VPS13A-210ENST00000471439 PROS1P07225 676 aa4.9□□□□□ -1.63
VPS13A-210ENST00000471439 ELANEP08246 267 aa4.9□□□□□ -1.63
VPS13A-210ENST00000471439 CETPP11597 493 aa4.9□□□□□ -1.63
VPS13A-210ENST00000471439 LAG3P18627 525 aa4.9□□□□□ -1.63
VPS13A-210ENST00000471439 USP14P54578 494 aa4.9□□□□□ -1.63
VPS13A-210ENST00000471439 CLRN1P58418 232 aa4.9□□□□□ -1.63
VPS13A-210ENST00000471439 ATP8B2P98198 1209 aa4.9□□□□□ -1.63
VPS13A-210ENST00000471439 MTM1Q13496 603 aa4.9□□□□□ -1.63
VPS13A-210ENST00000471439 GBX1Q14549 363 aa4.9□□□□□ -1.63
VPS13A-210ENST00000471439 LLGL1Q15334 1064 aa4.9□□□□□ -1.63
VPS13A-210ENST00000471439 RAB30Q15771 203 aa4.9□□□□□ -1.63
VPS13A-210ENST00000471439 SLC4A10Q6U841 1118 aa4.9□□□□□ -1.63
VPS13A-210ENST00000471439 PDZD4Q76G19 769 aaPredicted RBP4.9□□□□□ -1.63
VPS13A-210ENST00000471439 APOBEC3FQ8IUX4 373 aaKnown RBP4.9□□□□□ -1.63
VPS13A-210ENST00000471439 DENND1CQ8IV53 801 aa4.9□□□□□ -1.63
VPS13A-210ENST00000471439 CAMKK1Q8N5S9 505 aa4.9□□□□□ -1.63
VPS13A-210ENST00000471439 CPEB3Q8NE35 698 aaKnown RBP4.9□□□□□ -1.63
VPS13A-210ENST00000471439 PLBD2Q8NHP8 589 aa4.9□□□□□ -1.63
VPS13A-210ENST00000471439 IFI44Q8TCB0 444 aa4.9□□□□□ -1.63
VPS13A-210ENST00000471439 RGMAQ96B86 450 aa4.9□□□□□ -1.63
VPS13A-210ENST00000471439 MRGPRX4Q96LA9 322 aa4.9□□□□□ -1.63
VPS13A-210ENST00000471439 CGRRF1Q99675 332 aa4.9□□□□□ -1.63
VPS13A-210ENST00000471439 VRK1Q99986 396 aaPredicted RBP4.9□□□□□ -1.63
VPS13A-210ENST00000471439 MRI1Q9BV20 369 aa4.9□□□□□ -1.63
VPS13A-210ENST00000471439 UPF3BQ9BZI7 483 aaKnown RBP4.9□□□□□ -1.63
VPS13A-210ENST00000471439 DEFB129Q9H1M3 183 aa4.9□□□□□ -1.63
VPS13A-210ENST00000471439 UBE2ZQ9H832 354 aaPredicted RBP4.9□□□□□ -1.63
VPS13A-210ENST00000471439 TDP1Q9NUW8 608 aa4.9□□□□□ -1.63
VPS13A-210ENST00000471439 FBXO34Q9NWN3 711 aa4.9□□□□□ -1.63
VPS13A-210ENST00000471439 DKK2Q9UBU2 259 aa4.9□□□□□ -1.63
VPS13A-210ENST00000471439 NIPSNAP3AQ9UFN0 247 aaPredicted RBP4.9□□□□□ -1.63
VPS13A-210ENST00000471439 CFAP20Q9Y6A4 193 aaKnown RBP4.9□□□□□ -1.63
VPS13A-210ENST00000471439 ABCC4O15439 1325 aa4.9□□□□□ -1.63
VPS13A-210ENST00000471439 FRMPD2Q68DX3 1309 aaPredicted RBP4.9□□□□□ -1.63
VPS13A-210ENST00000471439 MYBBP1AQ9BQG0 1328 aaKnown RBP4.9□□□□□ -1.63
VPS13A-210ENST00000471439 DMXL2Q8TDJ6 3036 aa4.9□□□□□ -1.63
VPS13A-210ENST00000471439 UBR2Q8IWV8 1755 aa4.89□□□□□ -1.63
VPS13A-210ENST00000471439 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP4.89□□□□□ -1.63
VPS13A-210ENST00000471439 TMEM200CA6NKL6 621 aa4.89□□□□□ -1.63
VPS13A-210ENST00000471439 MARCH11A6NNE9 402 aa4.89□□□□□ -1.63
VPS13A-210ENST00000471439 H3BML4 177 aa4.89□□□□□ -1.63
VPS13A-210ENST00000471439 TNPO2O14787 897 aaKnown RBP4.89□□□□□ -1.63
VPS13A-210ENST00000471439 B3GALT2O43825 422 aa4.89□□□□□ -1.63
VPS13A-210ENST00000471439 GPR32O75388 356 aa4.89□□□□□ -1.63
VPS13A-210ENST00000471439 UBXN7O94888 489 aa4.89□□□□□ -1.63
VPS13A-210ENST00000471439 FTLP02792 175 aaPredicted RBP4.89□□□□□ -1.63
VPS13A-210ENST00000471439 KCNA5P22460 613 aa4.89□□□□□ -1.63
VPS13A-210ENST00000471439 CDC42EP1Q00587 391 aa4.89□□□□□ -1.63
VPS13A-210ENST00000471439 FPGSQ05932 587 aa4.89□□□□□ -1.63
VPS13A-210ENST00000471439 TP53BP2Q13625 1128 aa4.89□□□□□ -1.63
VPS13A-210ENST00000471439 MAP9Q49MG5 647 aa4.89□□□□□ -1.63
VPS13A-210ENST00000471439 LY6G5CQ5SRR4 150 aa4.89□□□□□ -1.63
VPS13A-210ENST00000471439 SWSAP1Q6NVH7 229 aa4.89□□□□□ -1.63
VPS13A-210ENST00000471439 ZNF529Q6P280 563 aa4.89□□□□□ -1.63
VPS13A-210ENST00000471439 MED25Q71SY5 747 aa4.89□□□□□ -1.63
VPS13A-210ENST00000471439 UBE3BQ7Z3V4 1068 aa4.89□□□□□ -1.63
VPS13A-210ENST00000471439 DRC7Q8IY82 874 aa4.89□□□□□ -1.63
VPS13A-210ENST00000471439 CCDC146Q8IYE0 955 aa4.89□□□□□ -1.63
VPS13A-210ENST00000471439 OR56A1Q8NGH5 318 aa4.89□□□□□ -1.63
VPS13A-210ENST00000471439 ZFP28Q8NHY6 868 aa4.89□□□□□ -1.63
VPS13A-210ENST00000471439 ASB10Q8WXI3 467 aa4.89□□□□□ -1.63
VPS13A-210ENST00000471439 C1GALT1C1Q96EU7 318 aa4.89□□□□□ -1.63
VPS13A-210ENST00000471439 MYEOVQ96EZ4 313 aa4.89□□□□□ -1.63
VPS13A-210ENST00000471439 CLPTM1LQ96KA5 538 aa4.89□□□□□ -1.63
VPS13A-210ENST00000471439 NT5C1BQ96P26 610 aa4.89□□□□□ -1.63
VPS13A-210ENST00000471439 DCLRE1CQ96SD1 692 aaKnown RBP4.89□□□□□ -1.63
VPS13A-210ENST00000471439 B3GNT5Q9BYG0 378 aa4.89□□□□□ -1.63
VPS13A-210ENST00000471439 WDR11Q9BZH6 1224 aa4.89□□□□□ -1.63
VPS13A-210ENST00000471439 LANCL2Q9NS86 450 aa4.89□□□□□ -1.63
VPS13A-210ENST00000471439 C11orf21Q9P2W6 132 aa4.89□□□□□ -1.63
VPS13A-210ENST00000471439 CCDC194A0A1B0GVG4 234 aa4.88□□□□□ -1.63
VPS13A-210ENST00000471439 EPOPA6NHQ4 379 aa4.88□□□□□ -1.63
VPS13A-210ENST00000471439 PDHXO00330 501 aa4.88□□□□□ -1.63
VPS13A-210ENST00000471439 RNASET2O00584 256 aaKnown RBP4.88□□□□□ -1.63
VPS13A-210ENST00000471439 PJA2O43164 708 aa4.88□□□□□ -1.63
VPS13A-210ENST00000471439 SGTAO43765 313 aa4.88□□□□□ -1.63
VPS13A-210ENST00000471439 MAP4K4O95819 1239 aaPredicted RBP4.88□□□□□ -1.63
VPS13A-210ENST00000471439 A1BGP04217 495 aa4.88□□□□□ -1.63
VPS13A-210ENST00000471439 SNRPA1P09661 255 aaKnown RBP4.88□□□□□ -1.63
VPS13A-210ENST00000471439 DDCP20711 480 aa4.88□□□□□ -1.63
VPS13A-210ENST00000471439 HTR1BP28222 390 aa4.88□□□□□ -1.63
VPS13A-210ENST00000471439 ZEB1P37275 1124 aaPredicted RBP4.88□□□□□ -1.63
VPS13A-210ENST00000471439 TLE1Q04724 770 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms