RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 TATDN2Q93075 761 aa12.72□□□□□ -0.37
USP40-210ENST00000454354 OTUB2Q96DC9 234 aa12.72□□□□□ -0.37
USP40-210ENST00000454354 TMEM176AQ96HP8 235 aa12.72□□□□□ -0.37
USP40-210ENST00000454354 DUSP16Q9BY84 665 aa12.72□□□□□ -0.37
USP40-210ENST00000454354 CYLDQ9NQC7 956 aa12.72□□□□□ -0.37
USP40-210ENST00000454354 TLR8Q9NR97 1041 aaKnown RBP12.72□□□□□ -0.37
USP40-210ENST00000454354 TBC1D14Q9P2M4 693 aa12.72□□□□□ -0.37
USP40-210ENST00000454354 CCDC163A0A0D9SF12 145 aa12.71□□□□□ -0.37
USP40-210ENST00000454354 BICDL2A1A5D9 508 aa12.71□□□□□ -0.37
USP40-210ENST00000454354 PPP1R3GB7ZBB8 358 aa12.71□□□□□ -0.37
USP40-210ENST00000454354 CYP26A1O43174 497 aa12.71□□□□□ -0.37
USP40-210ENST00000454354 TLR5O60602 858 aa12.71□□□□□ -0.37
USP40-210ENST00000454354 CNR2P34972 360 aa12.71□□□□□ -0.37
USP40-210ENST00000454354 PGFP49763 221 aa12.71□□□□□ -0.37
USP40-210ENST00000454354 KIF11P52732 1056 aa12.71□□□□□ -0.37
USP40-210ENST00000454354 DMWDQ09019 674 aa12.71□□□□□ -0.37
USP40-210ENST00000454354 DHCR24Q15392 516 aa12.71□□□□□ -0.37
USP40-210ENST00000454354 ZNF394Q53GI3 561 aa12.71□□□□□ -0.37
USP40-210ENST00000454354 ARHGAP17Q68EM7 881 aa12.71□□□□□ -0.37
USP40-210ENST00000454354 ISM2Q6H9L7 571 aa12.71□□□□□ -0.37
USP40-210ENST00000454354 CCDC186Q7Z3E2 898 aa12.71□□□□□ -0.37
USP40-210ENST00000454354 WDR5BQ86VZ2 330 aa12.71□□□□□ -0.37
USP40-210ENST00000454354 UBR7Q8N806 425 aa12.71□□□□□ -0.37
USP40-210ENST00000454354 UBXN6Q9BZV1 441 aa12.71□□□□□ -0.37
USP40-210ENST00000454354 USP3Q9Y6I4 520 aa12.71□□□□□ -0.37
USP40-210ENST00000454354 NUP205Q92621 2012 aa12.71□□□□□ -0.38
USP40-210ENST00000454354 ADH1CP00326 375 aa12.7□□□□□ -0.38
USP40-210ENST00000454354 ACO1P21399 889 aaKnown RBP12.7□□□□□ -0.38
USP40-210ENST00000454354 TBXAS1P24557 533 aaPredicted RBP12.7□□□□□ -0.38
USP40-210ENST00000454354 EIF2DP41214 584 aaKnown RBP12.7□□□□□ -0.38
USP40-210ENST00000454354 FMO5P49326 533 aa12.7□□□□□ -0.38
USP40-210ENST00000454354 FNTBP49356 437 aa12.7□□□□□ -0.38
USP40-210ENST00000454354 PSEN1P49768 467 aa12.7□□□□□ -0.38
USP40-210ENST00000454354 YWHAEP62258 255 aaKnown RBP12.7□□□□□ -0.38
USP40-210ENST00000454354 CUL2Q13617 745 aa12.7□□□□□ -0.38
USP40-210ENST00000454354 KLHDC10Q6PID8 442 aa12.7□□□□□ -0.38
USP40-210ENST00000454354 RHBDF2Q6PJF5 856 aa12.7□□□□□ -0.38
USP40-210ENST00000454354 ZNF276Q8N554 614 aa12.7□□□□□ -0.38
USP40-210ENST00000454354 TRIML1Q8N9V2 468 aa12.7□□□□□ -0.38
USP40-210ENST00000454354 CCDC26Q8TAB7 109 aa12.7□□□□□ -0.38
USP40-210ENST00000454354 NELFBQ8WX92 580 aa12.7□□□□□ -0.38
USP40-210ENST00000454354 HEXIM2Q96MH2 286 aaKnown RBP12.7□□□□□ -0.38
USP40-210ENST00000454354 NMUR1Q9HB89 426 aa12.7□□□□□ -0.38
USP40-210ENST00000454354 OSER1Q9NX31 292 aa12.7□□□□□ -0.38
USP40-210ENST00000454354 CTNND2Q9UQB3 1225 aa12.7□□□□□ -0.38
USP40-210ENST00000454354 SDK1Q7Z5N4 2213 aa12.69□□□□□ -0.38
USP40-210ENST00000454354 P4HA2O15460 535 aa12.69□□□□□ -0.38
USP40-210ENST00000454354 GREM1O60565 184 aa12.69□□□□□ -0.38
USP40-210ENST00000454354 ADH5P11766 374 aa12.69□□□□□ -0.38
USP40-210ENST00000454354 HOXC13P31276 330 aa12.69□□□□□ -0.38
USP40-210ENST00000454354 MARSP56192 900 aaKnown RBP12.69□□□□□ -0.38
USP40-210ENST00000454354 UBE2HP62256 183 aa12.69□□□□□ -0.38
USP40-210ENST00000454354 PAK1Q13153 545 aa12.69□□□□□ -0.38
USP40-210ENST00000454354 CCDC40Q4G0X9 1142 aa12.69□□□□□ -0.38
USP40-210ENST00000454354 RAB41Q5JT25 222 aa12.69□□□□□ -0.38
USP40-210ENST00000454354 LAIR1Q6GTX8 287 aa12.69□□□□□ -0.38
USP40-210ENST00000454354 KLHL10Q6JEL2 608 aa12.69□□□□□ -0.38
USP40-210ENST00000454354 SYT13Q7L8C5 426 aa12.69□□□□□ -0.38
USP40-210ENST00000454354 DCLK2Q8N568 766 aa12.69□□□□□ -0.38
USP40-210ENST00000454354 RPLP0P6Q8NHW5 317 aa12.69□□□□□ -0.38
USP40-210ENST00000454354 JAKMIP2Q96AA8 810 aa12.69□□□□□ -0.38
USP40-210ENST00000454354 ACDQ96AP0 544 aa12.69□□□□□ -0.38
USP40-210ENST00000454354 HINFPQ9BQA5 517 aa12.69□□□□□ -0.38
USP40-210ENST00000454354 KLF16Q9BXK1 252 aaPredicted RBP12.69□□□□□ -0.38
USP40-210ENST00000454354 NACA2Q9H009 215 aa12.69□□□□□ -0.38
USP40-210ENST00000454354 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.69□□□□□ -0.38
USP40-210ENST00000454354 CLIC5Q9NZA1 410 aa12.69□□□□□ -0.38
USP40-210ENST00000454354 CHMP5Q9NZZ3 219 aa12.69□□□□□ -0.38
USP40-210ENST00000454354 NCDNQ9UBB6 729 aa12.69□□□□□ -0.38
USP40-210ENST00000454354 SH3BP1Q9Y3L3 701 aa12.69□□□□□ -0.38
USP40-210ENST00000454354 CEP192Q8TEP8 1941 aa12.68□□□□□ -0.38
USP40-210ENST00000454354 TNRC6BQ9UPQ9 1833 aaKnown RBP12.68□□□□□ -0.38
USP40-210ENST00000454354 A0A0A0MRY4 1105 aa12.68□□□□□ -0.38
USP40-210ENST00000454354 A0A1W2PQH9 124 aa12.68□□□□□ -0.38
USP40-210ENST00000454354 K7EQS6 105 aa12.68□□□□□ -0.38
USP40-210ENST00000454354 BIN1O00499 593 aa12.68□□□□□ -0.38
USP40-210ENST00000454354 SCAMP3O14828 347 aaKnown RBP12.68□□□□□ -0.38
USP40-210ENST00000454354 HOXC11O43248 304 aaPredicted RBP12.68□□□□□ -0.38
USP40-210ENST00000454354 HRO43593 1189 aa12.68□□□□□ -0.38
USP40-210ENST00000454354 TBX18O95935 607 aa12.68□□□□□ -0.38
USP40-210ENST00000454354 CHRM1P11229 460 aaPredicted RBP12.68□□□□□ -0.38
USP40-210ENST00000454354 ATP5C1P36542 298 aaKnown RBP12.68□□□□□ -0.38
USP40-210ENST00000454354 LY6G5CQ5SRR4 150 aa12.68□□□□□ -0.38
USP40-210ENST00000454354 HTR3DQ70Z44 454 aa12.68□□□□□ -0.38
USP40-210ENST00000454354 SCD5Q86SK9 330 aa12.68□□□□□ -0.38
USP40-210ENST00000454354 C12orf40Q86WS4 652 aa12.68□□□□□ -0.38
USP40-210ENST00000454354 TTC30AQ86WT1 665 aa12.68□□□□□ -0.38
USP40-210ENST00000454354 TRIM59Q8IWR1 403 aa12.68□□□□□ -0.38
USP40-210ENST00000454354 BBS7Q8IWZ6 715 aa12.68□□□□□ -0.38
USP40-210ENST00000454354 ETFBKMTQ8IXQ9 262 aa12.68□□□□□ -0.38
USP40-210ENST00000454354 KIAA2013Q8IYS2 634 aa12.68□□□□□ -0.38
USP40-210ENST00000454354 PHTF2Q8N3S3 785 aa12.68□□□□□ -0.38
USP40-210ENST00000454354 CAMKK1Q8N5S9 505 aa12.68□□□□□ -0.38
USP40-210ENST00000454354 GPR161Q8N6U8 529 aaKnown RBP12.68□□□□□ -0.38
USP40-210ENST00000454354 ANKRD52Q8NB46 1076 aa12.68□□□□□ -0.38
USP40-210ENST00000454354 LMO3Q8TAP4 145 aa12.68□□□□□ -0.38
USP40-210ENST00000454354 USP33Q8TEY7 942 aa12.68□□□□□ -0.38
USP40-210ENST00000454354 SECISBP2LQ93073 1101 aaKnown RBP12.68□□□□□ -0.38
USP40-210ENST00000454354 WBP2Q969T9 261 aa12.68□□□□□ -0.38
USP40-210ENST00000454354 KIAA1468Q9P260 1216 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms