RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 HLA-CQ95604 372 aa12.17□□□□□ -0.46
SCN9A-204ENST00000452182 CORO1BQ9BR76 489 aa12.17□□□□□ -0.46
SCN9A-204ENST00000452182 ULBP1Q9BZM6 244 aa12.17□□□□□ -0.46
SCN9A-204ENST00000452182 ZNF334Q9HCZ1 680 aaPredicted RBP12.17□□□□□ -0.46
SCN9A-204ENST00000452182 WDR6Q9NNW5 1121 aaKnown RBP12.17□□□□□ -0.46
SCN9A-204ENST00000452182 HCFC1R1Q9NWW0 138 aa12.17□□□□□ -0.46
SCN9A-204ENST00000452182 TAS2R14Q9NYV8 317 aa12.17□□□□□ -0.46
SCN9A-204ENST00000452182 WDR35Q9P2L0 1181 aa12.17□□□□□ -0.46
SCN9A-204ENST00000452182 CD207Q9UJ71 328 aa12.17□□□□□ -0.46
SCN9A-204ENST00000452182 MAGED2Q9UNF1 606 aaPredicted RBP12.17□□□□□ -0.46
SCN9A-204ENST00000452182 SPTBN5Q9NRC6 3674 aaKnown RBP12.16□□□□□ -0.46
SCN9A-204ENST00000452182 SOWAHDA6NJG2 315 aa12.16□□□□□ -0.46
SCN9A-204ENST00000452182 EIF3CLB5ME19 914 aaKnown RBP12.16□□□□□ -0.46
SCN9A-204ENST00000452182 ZNF197O14709 1029 aa12.16□□□□□ -0.46
SCN9A-204ENST00000452182 GLI1P08151 1106 aa12.16□□□□□ -0.46
SCN9A-204ENST00000452182 USP17L7P0C7H9 530 aa12.16□□□□□ -0.46
SCN9A-204ENST00000452182 CDC25CP30307 473 aa12.16□□□□□ -0.46
SCN9A-204ENST00000452182 MTHFRP42898 656 aa12.16□□□□□ -0.46
SCN9A-204ENST00000452182 SKIV2LQ15477 1246 aaKnown RBP12.16□□□□□ -0.46
SCN9A-204ENST00000452182 PRSS36Q5K4E3 855 aa12.16□□□□□ -0.46
SCN9A-204ENST00000452182 CCDC122Q5T0U0 273 aa12.16□□□□□ -0.46
SCN9A-204ENST00000452182 OLFML1Q6UWY5 402 aa12.16□□□□□ -0.46
SCN9A-204ENST00000452182 EP400NLQ6ZTU2 488 aa12.16□□□□□ -0.46
SCN9A-204ENST00000452182 GAREM2Q75VX8 874 aa12.16□□□□□ -0.46
SCN9A-204ENST00000452182 PDZD4Q76G19 769 aaPredicted RBP12.16□□□□□ -0.46
SCN9A-204ENST00000452182 BEND5Q7L4P6 421 aa12.16□□□□□ -0.46
SCN9A-204ENST00000452182 BHLHA9Q7RTU4 235 aa12.16□□□□□ -0.46
SCN9A-204ENST00000452182 GRASPQ7Z6J2 395 aaPredicted RBP12.16□□□□□ -0.46
SCN9A-204ENST00000452182 TMEM150AQ86TG1 271 aa12.16□□□□□ -0.46
SCN9A-204ENST00000452182 XYLT1Q86Y38 959 aa12.16□□□□□ -0.46
SCN9A-204ENST00000452182 ARHGAP18Q8N392 663 aa12.16□□□□□ -0.46
SCN9A-204ENST00000452182 ZNF276Q8N554 614 aa12.16□□□□□ -0.46
SCN9A-204ENST00000452182 MAFAQ8NHW3 353 aaPredicted RBP12.16□□□□□ -0.46
SCN9A-204ENST00000452182 FBXO32Q969P5 355 aa12.16□□□□□ -0.46
SCN9A-204ENST00000452182 MCRS1Q96EZ8 462 aa12.16□□□□□ -0.46
SCN9A-204ENST00000452182 TRIM11Q96F44 468 aa12.16□□□□□ -0.46
SCN9A-204ENST00000452182 RIPOR3Q96MK2 946 aa12.16□□□□□ -0.46
SCN9A-204ENST00000452182 NECTIN4Q96NY8 510 aa12.16□□□□□ -0.46
SCN9A-204ENST00000452182 EIF3CQ99613 913 aaKnown RBP12.16□□□□□ -0.46
SCN9A-204ENST00000452182 C11orf70Q9BRQ4 267 aa12.16□□□□□ -0.46
SCN9A-204ENST00000452182 TLR8Q9NR97 1041 aaKnown RBP12.16□□□□□ -0.46
SCN9A-204ENST00000452182 ASNSD1Q9NWL6 643 aa12.16□□□□□ -0.46
SCN9A-204ENST00000452182 CLIC5Q9NZA1 410 aa12.16□□□□□ -0.46
SCN9A-204ENST00000452182 TJP2Q9UDY2 1190 aa12.16□□□□□ -0.46
SCN9A-204ENST00000452182 ZMYM5Q9UJ78 669 aa12.16□□□□□ -0.46
SCN9A-204ENST00000452182 EPN1Q9Y6I3 576 aaPredicted RBP12.16□□□□□ -0.46
SCN9A-204ENST00000452182 DENND4AQ7Z401 1863 aa12.16□□□□□ -0.46
SCN9A-204ENST00000452182 CLUHO75153 1309 aa12.16□□□□□ -0.46
SCN9A-204ENST00000452182 ANAPC1Q9H1A4 1944 aa12.16□□□□□ -0.46
SCN9A-204ENST00000452182 ZNF840PA6NDX5 716 aa12.15□□□□□ -0.46
SCN9A-204ENST00000452182 ARHGAP6O43182 974 aa12.15□□□□□ -0.46
SCN9A-204ENST00000452182 NRDCO43847 1150 aa12.15□□□□□ -0.46
SCN9A-204ENST00000452182 NDUFA10O95299 355 aa12.15□□□□□ -0.46
SCN9A-204ENST00000452182 MYBL1P10243 752 aa12.15□□□□□ -0.46
SCN9A-204ENST00000452182 PFKLP17858 780 aa12.15□□□□□ -0.46
SCN9A-204ENST00000452182 KCNA5P22460 613 aa12.15□□□□□ -0.46
SCN9A-204ENST00000452182 GABRR2P28476 465 aa12.15□□□□□ -0.46
SCN9A-204ENST00000452182 TUBP50607 506 aa12.15□□□□□ -0.46
SCN9A-204ENST00000452182 SLC6A3Q01959 620 aa12.15□□□□□ -0.46
SCN9A-204ENST00000452182 IFRD2Q12894 506 aaPredicted RBP12.15□□□□□ -0.46
SCN9A-204ENST00000452182 EFHC1Q5JVL4 640 aa12.15□□□□□ -0.46
SCN9A-204ENST00000452182 RAD9BQ6WBX8 426 aa12.15□□□□□ -0.46
SCN9A-204ENST00000452182 TOGARAM2Q6ZUX3 1019 aa12.15□□□□□ -0.46
SCN9A-204ENST00000452182 FAM183BPQ6ZVS7 135 aa12.15□□□□□ -0.46
SCN9A-204ENST00000452182 SLC26A9Q7LBE3 791 aa12.15□□□□□ -0.46
SCN9A-204ENST00000452182 ARCQ7LC44 396 aa12.15□□□□□ -0.46
SCN9A-204ENST00000452182 C3orf20Q8ND61 904 aa12.15□□□□□ -0.46
SCN9A-204ENST00000452182 FEZF2Q8TBJ5 459 aa12.15□□□□□ -0.46
SCN9A-204ENST00000452182 PPM1EQ8WY54 764 aa12.15□□□□□ -0.46
SCN9A-204ENST00000452182 SUSD6Q92537 303 aa12.15□□□□□ -0.46
SCN9A-204ENST00000452182 GCNAQ96QF7 691 aa12.15□□□□□ -0.46
SCN9A-204ENST00000452182 TRIM62Q9BVG3 475 aa12.15□□□□□ -0.46
SCN9A-204ENST00000452182 SPTLC3Q9NUV7 552 aa12.15□□□□□ -0.46
SCN9A-204ENST00000452182 TRPM5Q9NZQ8 1165 aa12.15□□□□□ -0.46
SCN9A-204ENST00000452182 INTUQ9ULD6 942 aa12.15□□□□□ -0.46
SCN9A-204ENST00000452182 DOCK6Q96HP0 2047 aa12.15□□□□□ -0.46
SCN9A-204ENST00000452182 PRUNE2Q8WUY3 3088 aa12.15□□□□□ -0.46
SCN9A-204ENST00000452182 TCRBV5S1A1TA0A578 114 aa12.15□□□□□ -0.47
SCN9A-204ENST00000452182 ANKRD62A6NC57 917 aa12.15□□□□□ -0.47
SCN9A-204ENST00000452182 YJEFN3A6XGL0 299 aa12.15□□□□□ -0.47
SCN9A-204ENST00000452182 TMCO5BA8MYB1 307 aa12.15□□□□□ -0.47
SCN9A-204ENST00000452182 E7ENQ6 273 aa12.15□□□□□ -0.47
SCN9A-204ENST00000452182 PIK3R2O00459 728 aa12.15□□□□□ -0.47
SCN9A-204ENST00000452182 ZNF263O14978 683 aa12.15□□□□□ -0.47
SCN9A-204ENST00000452182 MOSPD3O75425 235 aa12.15□□□□□ -0.47
SCN9A-204ENST00000452182 TADA3O75528 432 aa12.15□□□□□ -0.47
SCN9A-204ENST00000452182 MYL4P12829 197 aa12.15□□□□□ -0.47
SCN9A-204ENST00000452182 DDX6P26196 483 aaKnown RBP eCLIP12.15□□□□□ -0.47
SCN9A-204ENST00000452182 CCR2P41597 374 aa12.15□□□□□ -0.47
SCN9A-204ENST00000452182 SMAD4Q13485 552 aaKnown RBP12.15□□□□□ -0.47
SCN9A-204ENST00000452182 SPA17Q15506 151 aa12.15□□□□□ -0.47
SCN9A-204ENST00000452182 SLC5A9Q2M3M2 681 aa12.15□□□□□ -0.47
SCN9A-204ENST00000452182 LEXMQ3ZCV2 418 aa12.15□□□□□ -0.47
SCN9A-204ENST00000452182 OR6B2Q6IFH4 312 aa12.15□□□□□ -0.47
SCN9A-204ENST00000452182 SCD5Q86SK9 330 aa12.15□□□□□ -0.47
SCN9A-204ENST00000452182 CLEC4CQ8WTT0 213 aa12.15□□□□□ -0.47
SCN9A-204ENST00000452182 APOL5Q9BWW9 433 aa12.15□□□□□ -0.47
SCN9A-204ENST00000452182 LUC7LQ9NQ29 371 aaKnown RBP12.15□□□□□ -0.47
SCN9A-204ENST00000452182 GMIPQ9P107 970 aa12.15□□□□□ -0.47
SCN9A-204ENST00000452182 CHORDC1Q9UHD1 332 aaPredicted RBP12.15□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 90.8 ms