RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 PSD3Q9NYI0 1048 aa12.74□□□□□ -0.37
TCOF1-205ENST00000439160 TRIM17Q9Y577 477 aa12.74□□□□□ -0.37
TCOF1-205ENST00000439160 KCNK1O00180 336 aa12.74□□□□□ -0.37
TCOF1-205ENST00000439160 NOL4O94818 638 aa12.74□□□□□ -0.37
TCOF1-205ENST00000439160 FAM107AO95990 144 aa12.74□□□□□ -0.37
TCOF1-205ENST00000439160 FDFT1P37268 417 aa12.74□□□□□ -0.37
TCOF1-205ENST00000439160 SLC6A3Q01959 620 aa12.74□□□□□ -0.37
TCOF1-205ENST00000439160 KRT33BQ14525 404 aa12.74□□□□□ -0.37
TCOF1-205ENST00000439160 GRAMD1BQ3KR37 738 aa12.74□□□□□ -0.37
TCOF1-205ENST00000439160 ZBTB41Q5SVQ8 909 aa12.74□□□□□ -0.37
TCOF1-205ENST00000439160 FAM171A1Q5VUB5 890 aa12.74□□□□□ -0.37
TCOF1-205ENST00000439160 C1orf146Q5VVC0 180 aa12.74□□□□□ -0.37
TCOF1-205ENST00000439160 LLGL2Q6P1M3 1020 aa12.74□□□□□ -0.37
TCOF1-205ENST00000439160 DDIASQ8IXT1 998 aa12.74□□□□□ -0.37
TCOF1-205ENST00000439160 ARHGAP18Q8N392 663 aa12.74□□□□□ -0.37
TCOF1-205ENST00000439160 ZSWIM2Q8NEG5 633 aa12.74□□□□□ -0.37
TCOF1-205ENST00000439160 LENG9Q96B70 501 aa12.74□□□□□ -0.37
TCOF1-205ENST00000439160 ERP27Q96DN0 273 aa12.74□□□□□ -0.37
TCOF1-205ENST00000439160 SGF29Q96ES7 293 aa12.74□□□□□ -0.37
TCOF1-205ENST00000439160 LBHD1Q9BQE6 289 aaPredicted RBP12.74□□□□□ -0.37
TCOF1-205ENST00000439160 EFHD1Q9BUP0 239 aa12.74□□□□□ -0.37
TCOF1-205ENST00000439160 Q9H521 79 aa12.74□□□□□ -0.37
TCOF1-205ENST00000439160 TMBIM4Q9HC24 238 aa12.74□□□□□ -0.37
TCOF1-205ENST00000439160 TRIM33Q9UPN9 1127 aa12.74□□□□□ -0.37
TCOF1-205ENST00000439160 SLC30A1Q9Y6M5 507 aa12.74□□□□□ -0.37
TCOF1-205ENST00000439160 ENDOD1O94919 500 aa12.74□□□□□ -0.37
TCOF1-205ENST00000439160 CKMP06732 381 aa12.74□□□□□ -0.37
TCOF1-205ENST00000439160 BDNFP23560 247 aa12.74□□□□□ -0.37
TCOF1-205ENST00000439160 RAB27AP51159 221 aa12.74□□□□□ -0.37
TCOF1-205ENST00000439160 TTC39BQ5VTQ0 682 aaPredicted RBP12.74□□□□□ -0.37
TCOF1-205ENST00000439160 C12orf56Q8IXR9 622 aa12.74□□□□□ -0.37
TCOF1-205ENST00000439160 SPDL1Q96EA4 605 aa12.74□□□□□ -0.37
TCOF1-205ENST00000439160 PCDH9Q9HC56 1237 aa12.74□□□□□ -0.37
TCOF1-205ENST00000439160 HMX1Q9NP08 348 aaPredicted RBP12.74□□□□□ -0.37
TCOF1-205ENST00000439160 SOWAHBA6NEL2 793 aa12.73□□□□□ -0.37
TCOF1-205ENST00000439160 ANXA9O76027 345 aa12.73□□□□□ -0.37
TCOF1-205ENST00000439160 ASS1P00966 412 aaKnown RBP12.73□□□□□ -0.37
TCOF1-205ENST00000439160 ZSCAN5DPP0CG00 497 aa12.73□□□□□ -0.37
TCOF1-205ENST00000439160 PECAM1P16284 738 aaPredicted RBP12.73□□□□□ -0.37
TCOF1-205ENST00000439160 TAF11Q15544 211 aa12.73□□□□□ -0.37
TCOF1-205ENST00000439160 CNGA2Q16280 664 aa12.73□□□□□ -0.37
TCOF1-205ENST00000439160 DUSP28Q4G0W2 176 aa12.73□□□□□ -0.37
TCOF1-205ENST00000439160 C12orf29Q8N999 325 aa12.73□□□□□ -0.37
TCOF1-205ENST00000439160 CACYBPQ9HB71 228 aaKnown RBP12.73□□□□□ -0.37
TCOF1-205ENST00000439160 WRAP73Q9P2S5 460 aaPredicted RBP12.73□□□□□ -0.37
TCOF1-205ENST00000439160 RGPD1P0DJD0 1748 aa12.73□□□□□ -0.37
TCOF1-205ENST00000439160 MYH2Q9UKX2 1941 aa12.73□□□□□ -0.37
TCOF1-205ENST00000439160 TBKBP1A7MCY6 615 aa12.73□□□□□ -0.37
TCOF1-205ENST00000439160 CES2O00748 559 aa12.73□□□□□ -0.37
TCOF1-205ENST00000439160 GNGT2O14610 69 aa12.73□□□□□ -0.37
TCOF1-205ENST00000439160 SMIM24O75264 130 aa12.73□□□□□ -0.37
TCOF1-205ENST00000439160 SLC11A2P49281 568 aa12.73□□□□□ -0.37
TCOF1-205ENST00000439160 PDAP1Q13442 181 aaKnown RBP12.73□□□□□ -0.37
TCOF1-205ENST00000439160 RPAINQ86UA6 219 aa12.73□□□□□ -0.37
TCOF1-205ENST00000439160 BLOC1S5Q8TDH9 187 aa12.73□□□□□ -0.37
TCOF1-205ENST00000439160 LPPQ93052 612 aa12.73□□□□□ -0.37
TCOF1-205ENST00000439160 TBCBQ99426 244 aa12.73□□□□□ -0.37
TCOF1-205ENST00000439160 SDR42E2A6NKP2 422 aa12.73□□□□□ -0.37
TCOF1-205ENST00000439160 CCDC22O60826 627 aa12.73□□□□□ -0.37
TCOF1-205ENST00000439160 HGSNATQ68CP4 663 aa12.73□□□□□ -0.37
TCOF1-205ENST00000439160 KDM7AQ6ZMT4 941 aa12.73□□□□□ -0.37
TCOF1-205ENST00000439160 TMC3Q7Z5M5 1100 aa12.73□□□□□ -0.37
TCOF1-205ENST00000439160 LRRC34Q8IZ02 419 aa12.73□□□□□ -0.37
TCOF1-205ENST00000439160 ULBP1Q9BZM6 244 aa12.73□□□□□ -0.37
TCOF1-205ENST00000439160 GRID1Q9ULK0 1009 aa12.73□□□□□ -0.37
TCOF1-205ENST00000439160 GSTA4O15217 222 aa12.73□□□□□ -0.37
TCOF1-205ENST00000439160 USP17L7P0C7H9 530 aa12.73□□□□□ -0.37
TCOF1-205ENST00000439160 OVGP1Q12889 678 aa12.73□□□□□ -0.37
TCOF1-205ENST00000439160 FAM110CQ1W6H9 321 aa12.73□□□□□ -0.37
TCOF1-205ENST00000439160 ARHGAP28Q9P2N2 729 aa12.73□□□□□ -0.37
TCOF1-205ENST00000439160 USH1CQ9Y6N9 552 aa12.73□□□□□ -0.37
TCOF1-205ENST00000439160 KDM3BQ7LBC6 1761 aa12.72□□□□□ -0.37
TCOF1-205ENST00000439160 EIF4E1BA6NMX2 242 aaKnown RBP12.72□□□□□ -0.37
TCOF1-205ENST00000439160 H0Y626 953 aa12.72□□□□□ -0.37
TCOF1-205ENST00000439160 HOXA2O43364 376 aa12.72□□□□□ -0.37
TCOF1-205ENST00000439160 FKBP1BP68106 108 aa12.72□□□□□ -0.37
TCOF1-205ENST00000439160 NOMO3P69849 1222 aa12.72□□□□□ -0.37
TCOF1-205ENST00000439160 FOXD4Q12950 439 aaPredicted RBP12.72□□□□□ -0.37
TCOF1-205ENST00000439160 CDH18Q13634 790 aa12.72□□□□□ -0.37
TCOF1-205ENST00000439160 IMPG1Q17R60 797 aa12.72□□□□□ -0.37
TCOF1-205ENST00000439160 CHADLQ6NUI6 762 aa12.72□□□□□ -0.37
TCOF1-205ENST00000439160 TFAP2DQ7Z6R9 452 aa12.72□□□□□ -0.37
TCOF1-205ENST00000439160 TSEN2Q8NCE0 465 aaKnown RBP12.72□□□□□ -0.37
TCOF1-205ENST00000439160 PDZD8Q8NEN9 1154 aa12.72□□□□□ -0.37
TCOF1-205ENST00000439160 PAFAH2Q99487 392 aa12.72□□□□□ -0.37
TCOF1-205ENST00000439160 RNF208Q9H0X6 261 aa12.72□□□□□ -0.37
TCOF1-205ENST00000439160 LATS2Q9NRM7 1088 aa12.72□□□□□ -0.37
TCOF1-205ENST00000439160 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.72□□□□□ -0.37
TCOF1-205ENST00000439160 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.72□□□□□ -0.37
TCOF1-205ENST00000439160 F5H5T6 163 aa12.72□□□□□ -0.37
TCOF1-205ENST00000439160 FZD9O00144 591 aa12.72□□□□□ -0.37
TCOF1-205ENST00000439160 ENO1P06733 434 aaKnown RBP12.72□□□□□ -0.37
TCOF1-205ENST00000439160 FLT3LGP49771 235 aa12.72□□□□□ -0.37
TCOF1-205ENST00000439160 RPL10AP62906 217 aaKnown RBP12.72□□□□□ -0.37
TCOF1-205ENST00000439160 ZNF177Q13360 481 aaPredicted RBP12.72□□□□□ -0.37
TCOF1-205ENST00000439160 DDX53Q86TM3 631 aaKnown RBP12.72□□□□□ -0.37
TCOF1-205ENST00000439160 COLGALT1Q8NBJ5 622 aa12.72□□□□□ -0.37
TCOF1-205ENST00000439160 PPTC7Q8NI37 304 aa12.72□□□□□ -0.37
TCOF1-205ENST00000439160 SMARCD1Q96GM5 515 aa12.72□□□□□ -0.37
TCOF1-205ENST00000439160 YME1L1Q96TA2 773 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms