RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 CHRNA5P30532 468 aa4.65□□□□□ -1.67
HMGB3-203ENST00000430118 ELF1P32519 619 aa4.65□□□□□ -1.67
HMGB3-203ENST00000430118 ADD2P35612 726 aa4.65□□□□□ -1.67
HMGB3-203ENST00000430118 MAP2K2P36507 400 aa4.65□□□□□ -1.67
HMGB3-203ENST00000430118 PHKA1P46020 1223 aa4.65□□□□□ -1.67
HMGB3-203ENST00000430118 MCM2P49736 904 aa4.65□□□□□ -1.67
HMGB3-203ENST00000430118 PSMC1P62191 440 aaKnown RBP4.65□□□□□ -1.67
HMGB3-203ENST00000430118 MPP1Q00013 466 aa4.65□□□□□ -1.67
HMGB3-203ENST00000430118 PIGFQ07326 219 aa4.65□□□□□ -1.67
HMGB3-203ENST00000430118 TBR1Q16650 682 aa4.65□□□□□ -1.67
HMGB3-203ENST00000430118 FAM110CQ1W6H9 321 aa4.65□□□□□ -1.67
HMGB3-203ENST00000430118 CRB2Q5IJ48 1285 aa4.65□□□□□ -1.67
HMGB3-203ENST00000430118 EEF1AKMT2Q5JPI9 291 aaKnown RBP4.65□□□□□ -1.67
HMGB3-203ENST00000430118 ATXN7L2Q5T6C5 722 aaPredicted RBP4.65□□□□□ -1.67
HMGB3-203ENST00000430118 L1TD1Q5T7N2 865 aaKnown RBP4.65□□□□□ -1.67
HMGB3-203ENST00000430118 UTP14CQ5TAP6 766 aaKnown RBP4.65□□□□□ -1.67
HMGB3-203ENST00000430118 ANKRD45Q5TZF3 282 aa4.65□□□□□ -1.67
HMGB3-203ENST00000430118 PLAG1Q6DJT9 500 aa4.65□□□□□ -1.67
HMGB3-203ENST00000430118 MZT2BQ6NZ67 158 aa4.65□□□□□ -1.67
HMGB3-203ENST00000430118 KLHL17Q6TDP4 642 aa4.65□□□□□ -1.67
HMGB3-203ENST00000430118 PRR23BQ6ZRT6 265 aa4.65□□□□□ -1.67
HMGB3-203ENST00000430118 GPRIN1Q7Z2K8 1008 aa4.65□□□□□ -1.67
HMGB3-203ENST00000430118 FAM83AQ86UY5 434 aa4.65□□□□□ -1.67
HMGB3-203ENST00000430118 MOGAT3Q86VF5 341 aa4.65□□□□□ -1.67
HMGB3-203ENST00000430118 PCSK9Q8NBP7 692 aaKnown RBP4.65□□□□□ -1.67
HMGB3-203ENST00000430118 SLC35B2Q8TB61 432 aa4.65□□□□□ -1.67
HMGB3-203ENST00000430118 STYXQ8WUJ0 223 aa4.65□□□□□ -1.67
HMGB3-203ENST00000430118 NUP133Q8WUM0 1156 aa4.65□□□□□ -1.67
HMGB3-203ENST00000430118 FAM227BQ96M60 508 aa4.65□□□□□ -1.67
HMGB3-203ENST00000430118 PRPF18Q99633 342 aaKnown RBP4.65□□□□□ -1.67
HMGB3-203ENST00000430118 EIF2AK1Q9BQI3 630 aaKnown RBP4.65□□□□□ -1.67
HMGB3-203ENST00000430118 SPATA25Q9BR10 227 aa4.65□□□□□ -1.67
HMGB3-203ENST00000430118 JMJD4Q9H9V9 463 aa4.65□□□□□ -1.67
HMGB3-203ENST00000430118 GOLGA2P5Q9HBQ8 144 aa4.65□□□□□ -1.67
HMGB3-203ENST00000430118 UBN1Q9NPG3 1134 aa4.65□□□□□ -1.67
HMGB3-203ENST00000430118 TBC1D23Q9NUY8 699 aa4.65□□□□□ -1.67
HMGB3-203ENST00000430118 HESX1Q9UBX0 185 aa4.65□□□□□ -1.67
HMGB3-203ENST00000430118 SRP68Q9UHB9 627 aaKnown RBP4.65□□□□□ -1.67
HMGB3-203ENST00000430118 HACL1Q9UJ83 578 aa4.65□□□□□ -1.67
HMGB3-203ENST00000430118 SHOC2Q9UQ13 582 aa4.65□□□□□ -1.67
HMGB3-203ENST00000430118 MTO1Q9Y2Z2 717 aaKnown RBP4.65□□□□□ -1.67
HMGB3-203ENST00000430118 COL5A3P25940 1745 aaPredicted RBP4.65□□□□□ -1.67
HMGB3-203ENST00000430118 INSRP06213 1382 aa4.65□□□□□ -1.67
HMGB3-203ENST00000430118 ANKRD26Q9UPS8 1709 aa4.64□□□□□ -1.67
HMGB3-203ENST00000430118 TMEM233B4DJY2 109 aa4.64□□□□□ -1.67
HMGB3-203ENST00000430118 F5H0A9 414 aaPredicted RBP4.64□□□□□ -1.67
HMGB3-203ENST00000430118 RFXAPO00287 272 aa4.64□□□□□ -1.67
HMGB3-203ENST00000430118 POLRMTO00411 1230 aaKnown RBP4.64□□□□□ -1.67
HMGB3-203ENST00000430118 PIP5K1BO14986 540 aa4.64□□□□□ -1.67
HMGB3-203ENST00000430118 CYP27B1O15528 508 aa4.64□□□□□ -1.67
HMGB3-203ENST00000430118 PAX4O43316 350 aa4.64□□□□□ -1.67
HMGB3-203ENST00000430118 BAIAP3O94812 1187 aa4.64□□□□□ -1.67
HMGB3-203ENST00000430118 AGFG2O95081 481 aa4.64□□□□□ -1.67
HMGB3-203ENST00000430118 MBD4O95243 580 aa4.64□□□□□ -1.67
HMGB3-203ENST00000430118 NTSR2O95665 410 aa4.64□□□□□ -1.67
HMGB3-203ENST00000430118 DDX58O95786 925 aaKnown RBP4.64□□□□□ -1.67
HMGB3-203ENST00000430118 LDHCP07864 332 aa4.64□□□□□ -1.67
HMGB3-203ENST00000430118 CKBP12277 381 aa4.64□□□□□ -1.67
HMGB3-203ENST00000430118 TPH1P17752 444 aa4.64□□□□□ -1.67
HMGB3-203ENST00000430118 TNFAIP3P21580 790 aa4.64□□□□□ -1.67
HMGB3-203ENST00000430118 LRPAP1P30533 357 aa4.64□□□□□ -1.67
HMGB3-203ENST00000430118 CDK7P50613 346 aa4.64□□□□□ -1.67
HMGB3-203ENST00000430118 ITPK1Q13572 414 aa4.64□□□□□ -1.67
HMGB3-203ENST00000430118 RIN1Q13671 783 aa4.64□□□□□ -1.67
HMGB3-203ENST00000430118 IQCB1Q15051 598 aa4.64□□□□□ -1.67
HMGB3-203ENST00000430118 TAF5Q15542 800 aa4.64□□□□□ -1.67
HMGB3-203ENST00000430118 NPY5RQ15761 445 aa4.64□□□□□ -1.67
HMGB3-203ENST00000430118 MGAT5BQ3V5L5 792 aa4.64□□□□□ -1.67
HMGB3-203ENST00000430118 FAXCQ5TGI0 409 aa4.64□□□□□ -1.67
HMGB3-203ENST00000430118 RRAGBQ5VZM2 374 aa4.64□□□□□ -1.67
HMGB3-203ENST00000430118 FCRL6Q6DN72 434 aa4.64□□□□□ -1.67
HMGB3-203ENST00000430118 DSTYKQ6XUX3 929 aa4.64□□□□□ -1.67
HMGB3-203ENST00000430118 C1orf122Q6ZSJ8 110 aa4.64□□□□□ -1.67
HMGB3-203ENST00000430118 SMIM5Q71RC9 77 aa4.64□□□□□ -1.67
HMGB3-203ENST00000430118 UBE3BQ7Z3V4 1068 aa4.64□□□□□ -1.67
HMGB3-203ENST00000430118 FAM124AQ86V42 546 aa4.64□□□□□ -1.67
HMGB3-203ENST00000430118 KRTAP19-1Q8IUB9 90 aa4.64□□□□□ -1.67
HMGB3-203ENST00000430118 TMTC1Q8IUR5 882 aa4.64□□□□□ -1.67
HMGB3-203ENST00000430118 CCDC28AQ8IWP9 274 aa4.64□□□□□ -1.67
HMGB3-203ENST00000430118 FTSJ3Q8IY81 847 aaKnown RBP4.64□□□□□ -1.67
HMGB3-203ENST00000430118 CARFQ8N187 725 aa4.64□□□□□ -1.67
HMGB3-203ENST00000430118 SIMC1Q8NDZ2 872 aa4.64□□□□□ -1.67
HMGB3-203ENST00000430118 SHCBP1Q8NEM2 672 aa4.64□□□□□ -1.67
HMGB3-203ENST00000430118 TMIEQ8NEW7 156 aa4.64□□□□□ -1.67
HMGB3-203ENST00000430118 ADAMTS17Q8TE56 1095 aa4.64□□□□□ -1.67
HMGB3-203ENST00000430118 CAPNS2Q96L46 248 aa4.64□□□□□ -1.67
HMGB3-203ENST00000430118 KLHL32Q96NJ5 620 aa4.64□□□□□ -1.67
HMGB3-203ENST00000430118 RTKNQ9BST9 563 aa4.64□□□□□ -1.67
HMGB3-203ENST00000430118 SGPP1Q9BX95 441 aa4.64□□□□□ -1.67
HMGB3-203ENST00000430118 SLC26A6Q9BXS9 759 aa4.64□□□□□ -1.67
HMGB3-203ENST00000430118 INO80BQ9C086 356 aaPredicted RBP4.64□□□□□ -1.67
HMGB3-203ENST00000430118 TWSG1Q9GZX9 223 aa4.64□□□□□ -1.67
HMGB3-203ENST00000430118 PCDHAC1Q9H158 963 aa4.64□□□□□ -1.67
HMGB3-203ENST00000430118 GSTO2Q9H4Y5 243 aa4.64□□□□□ -1.67
HMGB3-203ENST00000430118 SEC61A2Q9H9S3 476 aa4.64□□□□□ -1.67
HMGB3-203ENST00000430118 PRDM8Q9NQV8 689 aa4.64□□□□□ -1.67
HMGB3-203ENST00000430118 FBXO34Q9NWN3 711 aa4.64□□□□□ -1.67
HMGB3-203ENST00000430118 TMOD4Q9NZQ9 345 aa4.64□□□□□ -1.67
HMGB3-203ENST00000430118 NCDNQ9UBB6 729 aa4.64□□□□□ -1.67
HMGB3-203ENST00000430118 NEU2Q9Y3R4 380 aa4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms