RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 DEFA1P59665 94 aa15.88■□□□□ 0.13
PTPRF-206ENST00000429895 DEFA3P59666 94 aa15.88■□□□□ 0.13
PTPRF-206ENST00000429895 SLC13A5Q86YT5 568 aaPredicted RBP15.88■□□□□ 0.13
PTPRF-206ENST00000429895 LPCAT1Q8NF37 534 aa15.88■□□□□ 0.13
PTPRF-206ENST00000429895 PTPRHQ9HD43 1115 aa15.88■□□□□ 0.13
PTPRF-206ENST00000429895 UTP6Q9NYH9 597 aaKnown RBP15.88■□□□□ 0.13
PTPRF-206ENST00000429895 GPR75-ASB3A0A0A6YYF3 556 aa15.88■□□□□ 0.13
PTPRF-206ENST00000429895 PON1P27169 355 aa15.88■□□□□ 0.13
PTPRF-206ENST00000429895 NFYCQ13952 458 aa15.88■□□□□ 0.13
PTPRF-206ENST00000429895 TRAF7Q6Q0C0 670 aa15.88■□□□□ 0.13
PTPRF-206ENST00000429895 TRMT11Q7Z4G4 463 aaKnown RBP15.88■□□□□ 0.13
PTPRF-206ENST00000429895 NT5DC4Q86YG4 428 aa15.88■□□□□ 0.13
PTPRF-206ENST00000429895 IGF2BP3O00425 579 aaKnown RBP eCLIP15.88■□□□□ 0.138e-7■■□□□ 11.5
PTPRF-206ENST00000429895 GAS2O43903 313 aaKnown RBP15.88■□□□□ 0.13
PTPRF-206ENST00000429895 SMNDC1O75940 238 aaKnown RBP eCLIP15.88■□□□□ 0.13
PTPRF-206ENST00000429895 TAL1P17542 331 aaPredicted RBP15.88■□□□□ 0.13
PTPRF-206ENST00000429895 NAMPTP43490 491 aa15.88■□□□□ 0.13
PTPRF-206ENST00000429895 CSHL1Q14406 222 aa15.88■□□□□ 0.13
PTPRF-206ENST00000429895 PDIA6Q15084 440 aa15.88■□□□□ 0.13
PTPRF-206ENST00000429895 EPS8L3Q8TE67 593 aaKnown RBP15.88■□□□□ 0.13
PTPRF-206ENST00000429895 ACOX2Q99424 681 aa15.88■□□□□ 0.13
PTPRF-206ENST00000429895 FOXP3Q9BZS1 431 aa15.88■□□□□ 0.13
PTPRF-206ENST00000429895 ISCUQ9H1K1 167 aa15.88■□□□□ 0.13
PTPRF-206ENST00000429895 A0A087WZ62 844 aa15.88■□□□□ 0.13
PTPRF-206ENST00000429895 MAPK1P28482 360 aa15.88■□□□□ 0.13
PTPRF-206ENST00000429895 FEN1P39748 380 aaKnown RBP15.88■□□□□ 0.13
PTPRF-206ENST00000429895 STRA8Q7Z7C7 330 aa15.88■□□□□ 0.13
PTPRF-206ENST00000429895 EDEM1Q92611 657 aa15.88■□□□□ 0.13
PTPRF-206ENST00000429895 FDXACB1Q9BRP7 624 aaPredicted RBP15.88■□□□□ 0.13
PTPRF-206ENST00000429895 SETD4Q9NVD3 440 aa15.88■□□□□ 0.13
PTPRF-206ENST00000429895 SNTG2Q9NY99 539 aa15.88■□□□□ 0.13
PTPRF-206ENST00000429895 GPRC5DQ9NZD1 345 aa15.88■□□□□ 0.13
PTPRF-206ENST00000429895 NDOR1Q9UHB4 597 aa15.88■□□□□ 0.13
PTPRF-206ENST00000429895 PSMD12O00232 456 aaPredicted RBP15.87■□□□□ 0.13
PTPRF-206ENST00000429895 GLRA3O75311 464 aa15.87■□□□□ 0.13
PTPRF-206ENST00000429895 CSF1RP07333 972 aa15.87■□□□□ 0.13
PTPRF-206ENST00000429895 KLRC2P26717 231 aa15.87■□□□□ 0.13
PTPRF-206ENST00000429895 YWHAQP27348 245 aa15.87■□□□□ 0.13
PTPRF-206ENST00000429895 SEC24CP53992 1094 aa15.87■□□□□ 0.13
PTPRF-206ENST00000429895 YWHAZP63104 245 aaKnown RBP15.87■□□□□ 0.13
PTPRF-206ENST00000429895 ANKS1AQ92625 1134 aa15.87■□□□□ 0.13
PTPRF-206ENST00000429895 FAR2Q96K12 515 aa15.87■□□□□ 0.13
PTPRF-206ENST00000429895 CAMKK2Q96RR4 588 aa15.87■□□□□ 0.13
PTPRF-206ENST00000429895 ZSWIM1Q9BR11 485 aa15.87■□□□□ 0.13
PTPRF-206ENST00000429895 UBE2OQ9C0C9 1292 aaKnown RBP15.87■□□□□ 0.13
PTPRF-206ENST00000429895 DCDC2Q9UHG0 476 aa15.87■□□□□ 0.13
PTPRF-206ENST00000429895 FBXO10Q9UK96 956 aa15.87■□□□□ 0.13
PTPRF-206ENST00000429895 AP4E1Q9UPM8 1137 aa15.87■□□□□ 0.13
PTPRF-206ENST00000429895 SDR42E2A6NKP2 422 aa15.87■□□□□ 0.13
PTPRF-206ENST00000429895 CRTAMO95727 393 aa15.87■□□□□ 0.13
PTPRF-206ENST00000429895 JCHAINP01591 159 aa15.87■□□□□ 0.13
PTPRF-206ENST00000429895 NPTX2P47972 431 aa15.87■□□□□ 0.13
PTPRF-206ENST00000429895 BCAT1P54687 386 aa15.87■□□□□ 0.13
PTPRF-206ENST00000429895 ZNF280DQ6N043 979 aa15.87■□□□□ 0.13
PTPRF-206ENST00000429895 LUZP2Q86TE4 346 aa15.87■□□□□ 0.13
PTPRF-206ENST00000429895 RIBC1Q8N443 379 aaPredicted RBP15.87■□□□□ 0.13
PTPRF-206ENST00000429895 CELF6Q96J87 481 aaKnown RBP15.87■□□□□ 0.13
PTPRF-206ENST00000429895 TBC1D23Q9NUY8 699 aa15.87■□□□□ 0.13
PTPRF-206ENST00000429895 ALDH2P05091 517 aa15.87■□□□□ 0.13
PTPRF-206ENST00000429895 ATP6V1B2P21281 511 aa15.87■□□□□ 0.13
PTPRF-206ENST00000429895 FGFR2P21802 821 aa15.87■□□□□ 0.13
PTPRF-206ENST00000429895 OTUD4Q01804 1114 aaKnown RBP15.87■□□□□ 0.13
PTPRF-206ENST00000429895 DNAJC9Q8WXX5 260 aa15.87■□□□□ 0.13
PTPRF-206ENST00000429895 PGLYRP2Q96PD5 576 aa15.87■□□□□ 0.13
PTPRF-206ENST00000429895 CBWD1Q9BRT8 395 aa15.87■□□□□ 0.13
PTPRF-206ENST00000429895 CEP41Q9BYV8 373 aa15.87■□□□□ 0.13
PTPRF-206ENST00000429895 ERI2A8K979 691 aaKnown RBP15.87■□□□□ 0.13
PTPRF-206ENST00000429895 TKTL1P51854 596 aa15.87■□□□□ 0.13
PTPRF-206ENST00000429895 GRB10Q13322 594 aa15.87■□□□□ 0.13
PTPRF-206ENST00000429895 C11orf63Q6NUN7 778 aa15.87■□□□□ 0.13
PTPRF-206ENST00000429895 TFAP2DQ7Z6R9 452 aa15.87■□□□□ 0.13
PTPRF-206ENST00000429895 PCSK9Q8NBP7 692 aaKnown RBP15.87■□□□□ 0.13
PTPRF-206ENST00000429895 CASP10Q92851 521 aa15.87■□□□□ 0.13
PTPRF-206ENST00000429895 PPP1R3GB7ZBB8 358 aa15.87■□□□□ 0.13
PTPRF-206ENST00000429895 IFRD1O00458 451 aaPredicted RBP15.87■□□□□ 0.13
PTPRF-206ENST00000429895 GLP2RO95838 553 aa15.87■□□□□ 0.13
PTPRF-206ENST00000429895 LY6KQ17RY6 165 aa15.87■□□□□ 0.13
PTPRF-206ENST00000429895 EMC1Q8N766 993 aa15.87■□□□□ 0.13
PTPRF-206ENST00000429895 ABCC3O15438 1527 aa15.87■□□□□ 0.13
PTPRF-206ENST00000429895 CCNT2O60583 730 aaKnown RBP15.86■□□□□ 0.13
PTPRF-206ENST00000429895 KATNA1O75449 491 aa15.86■□□□□ 0.13
PTPRF-206ENST00000429895 NFICP08651 508 aa15.86■□□□□ 0.13
PTPRF-206ENST00000429895 GTF2E2P29084 291 aaKnown RBP15.86■□□□□ 0.13
PTPRF-206ENST00000429895 LSP1P33241 339 aa15.86■□□□□ 0.13
PTPRF-206ENST00000429895 BNIPLQ7Z465 357 aa15.86■□□□□ 0.13
PTPRF-206ENST00000429895 ELMO3Q96BJ8 720 aa15.86■□□□□ 0.13
PTPRF-206ENST00000429895 SERAC1Q96JX3 654 aa15.86■□□□□ 0.13
PTPRF-206ENST00000429895 GBA2Q9HCG7 927 aaPredicted RBP15.86■□□□□ 0.13
PTPRF-206ENST00000429895 SMPD4Q9NXE4 827 aa15.86■□□□□ 0.13
PTPRF-206ENST00000429895 MSH3P20585 1137 aa15.86■□□□□ 0.13
PTPRF-206ENST00000429895 STIP1P31948 543 aaKnown RBP15.86■□□□□ 0.13
PTPRF-206ENST00000429895 KLC1Q07866 573 aa15.86■□□□□ 0.13
PTPRF-206ENST00000429895 DOK6Q6PKX4 331 aa15.86■□□□□ 0.13
PTPRF-206ENST00000429895 CYP4Z1Q86W10 505 aa15.86■□□□□ 0.13
PTPRF-206ENST00000429895 SPACA7Q96KW9 195 aa15.86■□□□□ 0.13
PTPRF-206ENST00000429895 ADARB2Q9NS39 739 aaKnown RBP15.86■□□□□ 0.13
PTPRF-206ENST00000429895 DDX43Q9NXZ2 648 aaKnown RBP15.86■□□□□ 0.13
PTPRF-206ENST00000429895 AKAP5P24588 427 aa15.86■□□□□ 0.13
PTPRF-206ENST00000429895 BACE1P56817 501 aa15.86■□□□□ 0.13
PTPRF-206ENST00000429895 STX5Q13190 355 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms