RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 KRT73Q86Y46 540 aa4.88□□□□□ -1.63
USP40-204ENST00000427947 FSTL5Q8N475 847 aaPredicted RBP4.88□□□□□ -1.63
USP40-204ENST00000427947 METTL25Q8N6Q8 603 aa4.88□□□□□ -1.63
USP40-204ENST00000427947 GPR150Q8NGU9 434 aa4.88□□□□□ -1.63
USP40-204ENST00000427947 MBD3L2Q8NHZ7 208 aaPredicted RBP4.88□□□□□ -1.63
USP40-204ENST00000427947 RP9Q8TA86 221 aaKnown RBP4.88□□□□□ -1.63
USP40-204ENST00000427947 GRAMD1AQ96CP6 724 aa4.88□□□□□ -1.63
USP40-204ENST00000427947 RSPRY1Q96DX4 576 aa4.88□□□□□ -1.63
USP40-204ENST00000427947 ZDHHC12Q96GR4 267 aa4.88□□□□□ -1.63
USP40-204ENST00000427947 PRR25Q96S07 402 aa4.88□□□□□ -1.63
USP40-204ENST00000427947 HAPLN3Q96S86 360 aa4.88□□□□□ -1.63
USP40-204ENST00000427947 ARPC5LQ9BPX5 153 aa4.88□□□□□ -1.63
USP40-204ENST00000427947 IKZF4Q9H2S9 585 aa4.88□□□□□ -1.63
USP40-204ENST00000427947 TMPRSS5Q9H3S3 457 aa4.88□□□□□ -1.63
USP40-204ENST00000427947 IL17RBQ9NRM6 502 aa4.88□□□□□ -1.63
USP40-204ENST00000427947 DUSP22Q9NRW4 184 aa4.88□□□□□ -1.63
USP40-204ENST00000427947 STEAP1Q9UHE8 339 aa4.88□□□□□ -1.63
USP40-204ENST00000427947 TLK1Q9UKI8 766 aa4.88□□□□□ -1.63
USP40-204ENST00000427947 SLC27A6Q9Y2P4 619 aa4.88□□□□□ -1.63
USP40-204ENST00000427947 GCOM1H8Y6P7 765 aaPredicted RBP4.87□□□□□ -1.63
USP40-204ENST00000427947 QSOX1O00391 747 aa4.87□□□□□ -1.63
USP40-204ENST00000427947 PRKCBP05771 671 aa4.87□□□□□ -1.63
USP40-204ENST00000427947 DLDP09622 509 aaKnown RBP4.87□□□□□ -1.63
USP40-204ENST00000427947 DRD4P21917 467 aa4.87□□□□□ -1.63
USP40-204ENST00000427947 SLC5A2P31639 672 aa4.87□□□□□ -1.63
USP40-204ENST00000427947 GKP32189 559 aa4.87□□□□□ -1.63
USP40-204ENST00000427947 EEFSECP57772 596 aaKnown RBP4.87□□□□□ -1.63
USP40-204ENST00000427947 TGFB2P61812 414 aa4.87□□□□□ -1.63
USP40-204ENST00000427947 SUMO2P61956 95 aaKnown RBP4.87□□□□□ -1.63
USP40-204ENST00000427947 TRIM14Q14142 442 aa4.87□□□□□ -1.63
USP40-204ENST00000427947 MAPKAPK3Q16644 382 aa4.87□□□□□ -1.63
USP40-204ENST00000427947 FAM153CQ494X1 144 aa4.87□□□□□ -1.63
USP40-204ENST00000427947 TMTC4Q5T4D3 741 aa4.87□□□□□ -1.63
USP40-204ENST00000427947 TSTD2Q5T7W7 516 aa4.87□□□□□ -1.63
USP40-204ENST00000427947 ABLIM2Q6H8Q1 611 aa4.87□□□□□ -1.63
USP40-204ENST00000427947 PGBD2Q6P3X8 592 aa4.87□□□□□ -1.63
USP40-204ENST00000427947 WDR53Q7Z5U6 358 aaPredicted RBP4.87□□□□□ -1.63
USP40-204ENST00000427947 RAB11FIP4Q86YS3 637 aa4.87□□□□□ -1.63
USP40-204ENST00000427947 RASAL3Q86YV0 1011 aa4.87□□□□□ -1.63
USP40-204ENST00000427947 CAGE1Q8TC20 777 aa4.87□□□□□ -1.63
USP40-204ENST00000427947 ABHD5Q8WTS1 349 aa4.87□□□□□ -1.63
USP40-204ENST00000427947 CHFRQ96EP1 664 aa4.87□□□□□ -1.63
USP40-204ENST00000427947 POLR3GLQ9BT43 218 aa4.87□□□□□ -1.63
USP40-204ENST00000427947 DUSP26Q9BV47 211 aa4.87□□□□□ -1.63
USP40-204ENST00000427947 CHMP4AQ9BY43 222 aa4.87□□□□□ -1.63
USP40-204ENST00000427947 DLL3Q9NYJ7 618 aa4.87□□□□□ -1.63
USP40-204ENST00000427947 NKX1-2Q9UD57 310 aaPredicted RBP4.87□□□□□ -1.63
USP40-204ENST00000427947 GABRQQ9UN88 632 aa4.87□□□□□ -1.63
USP40-204ENST00000427947 AQP12BA6NM10 295 aa4.86□□□□□ -1.63
USP40-204ENST00000427947 CES2O00748 559 aa4.86□□□□□ -1.63
USP40-204ENST00000427947 PIP5K1BO14986 540 aa4.86□□□□□ -1.63
USP40-204ENST00000427947 ZSCAN9O15535 394 aaPredicted RBP4.86□□□□□ -1.63
USP40-204ENST00000427947 PMPCBO75439 489 aa4.86□□□□□ -1.63
USP40-204ENST00000427947 SKAP2O75563 359 aaPredicted RBP4.86□□□□□ -1.63
USP40-204ENST00000427947 NPSP0C0P6 89 aa4.86□□□□□ -1.63
USP40-204ENST00000427947 CD19P15391 556 aa4.86□□□□□ -1.63
USP40-204ENST00000427947 HTR7P34969 479 aa4.86□□□□□ -1.63
USP40-204ENST00000427947 TRAPPC10P48553 1259 aa4.86□□□□□ -1.63
USP40-204ENST00000427947 CACNA2D1P54289 1103 aa4.86□□□□□ -1.63
USP40-204ENST00000427947 EIF4A1P60842 406 aaKnown RBP4.86□□□□□ -1.63
USP40-204ENST00000427947 ICA1Q05084 483 aa4.86□□□□□ -1.63
USP40-204ENST00000427947 NSUN2Q08J23 767 aaKnown RBP eCLIP4.86□□□□□ -1.63
USP40-204ENST00000427947 PUM3Q15397 648 aaKnown RBP4.86□□□□□ -1.63
USP40-204ENST00000427947 PRR16Q569H4 304 aa4.86□□□□□ -1.63
USP40-204ENST00000427947 LCE5AQ5TCM9 118 aa4.86□□□□□ -1.63
USP40-204ENST00000427947 ARL6IP4Q66PJ3 421 aaKnown RBP4.86□□□□□ -1.63
USP40-204ENST00000427947 ANKRD16Q6P6B7 361 aa4.86□□□□□ -1.63
USP40-204ENST00000427947 SIRT6Q8N6T7 355 aa4.86□□□□□ -1.63
USP40-204ENST00000427947 SIMC1Q8NDZ2 872 aa4.86□□□□□ -1.63
USP40-204ENST00000427947 ABHD11Q8NFV4 315 aa4.86□□□□□ -1.63
USP40-204ENST00000427947 WDYHV1Q96HA8 205 aa4.86□□□□□ -1.63
USP40-204ENST00000427947 AGAP2Q99490 1192 aa4.86□□□□□ -1.63
USP40-204ENST00000427947 PTPRHQ9HD43 1115 aa4.86□□□□□ -1.63
USP40-204ENST00000427947 TRIM36Q9NQ86 728 aa4.86□□□□□ -1.63
USP40-204ENST00000427947 ASB6Q9NWX5 421 aa4.86□□□□□ -1.63
USP40-204ENST00000427947 ADAMTS5Q9UNA0 930 aa4.86□□□□□ -1.63
USP40-204ENST00000427947 ENTPD2Q9Y5L3 495 aa4.86□□□□□ -1.63
USP40-204ENST00000427947 WDR33Q9C0J8 1336 aaKnown RBP4.86□□□□□ -1.63
USP40-204ENST00000427947 ERCC6L2Q5T890 1561 aa4.86□□□□□ -1.63
USP40-204ENST00000427947 KMT2BQ9UMN6 2715 aaPredicted RBP4.86□□□□□ -1.63
USP40-204ENST00000427947 GOLGA6L3A6NEY3 463 aa4.85□□□□□ -1.63
USP40-204ENST00000427947 LGALS16A8MUM7 142 aa4.85□□□□□ -1.63
USP40-204ENST00000427947 SPRY2O43597 315 aa4.85□□□□□ -1.63
USP40-204ENST00000427947 WDR47O94967 919 aa4.85□□□□□ -1.63
USP40-204ENST00000427947 PDE8BO95263 885 aa4.85□□□□□ -1.63
USP40-204ENST00000427947 VIPP01282 170 aa4.85□□□□□ -1.63
USP40-204ENST00000427947 FAM163BP0C2L3 166 aa4.85□□□□□ -1.63
USP40-204ENST00000427947 SRGAP2BP0DMP2 458 aa4.85□□□□□ -1.63
USP40-204ENST00000427947 CREB1P16220 341 aa4.85□□□□□ -1.63
USP40-204ENST00000427947 PDIA3P30101 505 aaKnown RBP4.85□□□□□ -1.63
USP40-204ENST00000427947 FHL3Q13643 280 aa4.85□□□□□ -1.63
USP40-204ENST00000427947 CLCA4Q14CN2 919 aa4.85□□□□□ -1.63
USP40-204ENST00000427947 ELF2Q15723 593 aa4.85□□□□□ -1.63
USP40-204ENST00000427947 ST3GAL2Q16842 350 aa4.85□□□□□ -1.63
USP40-204ENST00000427947 PCID2Q5JVF3 399 aa4.85□□□□□ -1.63
USP40-204ENST00000427947 AKNAD1Q5T1N1 836 aa4.85□□□□□ -1.63
USP40-204ENST00000427947 L1TD1Q5T7N2 865 aaKnown RBP4.85□□□□□ -1.63
USP40-204ENST00000427947 SLC29A4Q7RTT9 530 aa4.85□□□□□ -1.63
USP40-204ENST00000427947 SUN3Q8TAQ9 357 aa4.85□□□□□ -1.63
USP40-204ENST00000427947 SORCS2Q96PQ0 1159 aa4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms